Gene detail

Detailed information of scaffold366.g8.t1 in Aurelia aurita complex sp. Pacific

Genomic Location: scaffold366:83827...87954
NR annotation: no NCBI-NR hit recorded
Species abbreviation AAURI2 · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

scaffold366.g8.t1

gaaacagtaaagtaaaacaagagacagtttttacagaaggaaaataatacgaaaatcgcggagagaaaatacagtgcgcctcattttggatagcaacaatatgaaagcgagattacatattcttggaaggaacatggcctaaaaaagtcagacccgaaataagctgccgcaaaatatggattattttcttgatttggcaaataaagatcttgggacttcaattcacacaaatgtagtaactgctgatggatatgaaattgaaaatcttatcgagaaatcaacacaacataaatttgaagcgtctccaaagtttggacttcatatttctcaaagctccaacaaccgaaattattcgaatggtttcatggcagaatactttgtgaaaccaccaatggatattgtcgttcaatttccatgtttagttgatatcgactgtctggtcctaaacaggagatctggttcaaagagggtctcagaatttacagtttttacggctaattctaggccagttgtggagaacgaggaacgcaaaattgcatccccttctaattcttcgactgatcacgaacgaaaatatatgctggccaagacaaagagtagagctaagttcccaacagaagaggctgaaattccgagtgcgtttccttttgaatatgaaccaaattattcagacacaagcgtcaggaaggagaatctcacaaatcttactatggttgggaaactgaattcaagaacagcaacaaacgatgttgcgatattcaggaatgcaaggaattctaatggcaagggaattgaatttgagaaacaaggcaaccaaacaattaactttttttctctgcagtttctttatggcaccagtcatcttattataagaatattcaggactgaggggtcaacggtagctgctgtgaagagtttagaagtttgggggagaccctctagaaataatggaaggcttgtgaataaccatgtttatggtttagttaagaaaatgaagaaacaacaggaccttaaaagatcaagcaatgggtgtaaaaagttgactagcaatcccgaaaagaaactgaacgaaaatgataagccaggaacttccattaaagaaacttgtgttgaagctagcaatgcttgtagcagtttagaacctgtcacatcaaaaattattcctgaagaatttatagaccctataacttttgaaataatggtcctaccagtgctactgccatcaggacatacaatagattctagtacattggagaaatgcacacaagctgataagaacaacggaagggatccattagacccattcactggcaaaacattgacagaaataaataaaacaattccaaatactgctttgaaatttagactggatgaattcctgttaaaaaacaatgtgactttgggtggggatgttatgggacaaaccagtggggtgaatttgaagaatggtttcagtacagttgaaagcatgaaatgcgtgaagaggaaattggataacaacccagaaattgtcagcgctaaaaagcattttagaatctcacatatcatcaaaggaacacatgatgaaaaatactacaaggaccgacatgaaaatttaaaagatagcaaattaagaatggatgatgatgttaaaaaagacttctttcctgatactagtccaaaagagcctatttcttgtgaaaagatgcttggaaataaactgcaaattgtacaagataaaacacatacagctagggcacatgattccagcaatgacactacaaagattgttgcaaagtgctttggaagcatttatgaaccagagcaacaaaacgaaggtgatactgtttcatcaaaattttcacatgagcagtctttgaaagacagcctcgaaacagcattacagaagatgatgagtagtttcacaaagccatgtgcaaaatcacagcaagaaaattccactacaaaaatatcttgttccatttgcaaagtttccgagaaagatgctggtttctttaaattgccttgtaatcatttgatttgcagaacatgtctaactaaaaatgcagctcaaaataaatgtaaattatgtctcaaaccattttccaactctgaaataacaagggtacatttttcatcatatttcaacaatgcctgatgttgtagtctgcggtgtgacctctacagggggagtttcccttcaatttttcctcccctgtagaggtcgcaccgnntcacagcaagaaaattccactacaaaaatatcttgttccatttgcaaagtttccgagaaagatgctggtttctttaaattgccttgtaatcatttgatttgcagaacatgtctaactaaaaatgcagctcaaaataaatgtaaattatgtctcaaaccattttccaactctgaaataacaagggtacatttttcatcatatttcaacaatgcctgatgttgtagtctgcggtgtgacctctacagggggagtttcccttcaatttttcctcccctgtagaggtcgcaccgcagactactgatgttgaagataaaatgacaagtgtttcaaatatctgtgttttccttgccttcaattctccaagtgatgagtttgcttgttagaatgtgtcacatactaaaaatcttacatattctttatgaacaactccaaaggatagattttattgttggccagaaaaggaaacattcatacagtagaactctacaaggaatatcaacagtcaatttctctgtgtgcagagtgactctagcaactggatcttgtaacactgtttgtcacactaaaaattcttcatgctaaagattcttcttactaaaaatttgtcatactcaaaaacttcccaaaaatctctgaaacacatcaaacaaagatctttctccttcacaagattcacaaaatcatggaacgagacaataaaacgtgattaagcttctataaatacataggaaacatatgaaggattttaatatgatagcacatttacagcatatttgttggcctatcattacaaaaagaacattgtgaaaattcttcaaacaaaaaattttgtacaatgagctttaatctcaagggtggacttgcacaagttgtctctttcttccttacaagacgacgtgcgcaagtccattccaaggggtactctaatatatctagtttagggatgctcactaggttactgtatttttttgtgtctaaaatttaggcaaagcttatttttttgggtcaattttgtacagttattgttttggttcctgaaattcggggttacttttttggatatcaaatatggggaaaaataaaaaaatgggacaaacaaaagttacaagcaaattaaaatcaagtaacattcaaaatctaatcagttggggcactttcccacagatttaagataccactgacttcaaaacgattgggtatgttggatcagaaaaaattattgattgggtctacttttgtgctacaaattatttttttgggttgatgctttgtaccttagcccgagctccctatcctaaacatcagtacccccctgcgccatcaatattccatacgttttctgttacatacaacaacttcacaactcttactgaagtctactctatatacagtttgttgctattagaatttaaatgcatacagaatttccaaatactaaatagttgtcttaagttgtttactacagtatttactgactgctgaaaataagaacatacagagaaacgataaacaataacttgcaaaaggaaacgtagcaccgacttagcataaataaagaattataaatttaattataaacaaatcatcctgtatgatttcatcttttttgttgacctttcccgttgaattatagcagagtaaaaaaccagcaaactttgatcatcgctttcggccgttttgaagggttttcgaaggggtcctttccagaaaatacttttaataattttagaacgctattgccaatctacgacaggtaacttaaaatgtaatgaaacatatccgctactaaataggacattttctaatatcaccgcttccaaaatccagaggacggtagcctttcaaacgtggattgtgtttcttttactcacccagtgttctgaaaagatctatcaaatagagactcttgactgct

Transcript

scaffold366.g8.t1

GAAACAGTAAAGTAAAACAAGAGACAGTTTTTACAGAAGGAAAATAATACGAAAATCGCGGAGAGAAAATACAGTGCGCCTCATTTTGGATAGCAACAATATGAAAGCGAGATTACATATTCTTGGAAGGAACATGGCCTAAAAAAGTCAGACCCGAAATAAGCTGCCGCAAAATATGGATTATTTTCTTGATTTGGCAAATAAAGATCTTGGGACTTCAATTCACACAAATGTAGTAACTGCTGATGGATATGAAATTGAAAATCTTATCGAGAAATCAACACAACATAAATTTGAAGCGTCTCCAAAGTTTGGACTTCATATTTCTCAAAGCTCCAACAACCGAAATTATTCGAATGGTTTCATGGCAGAATACTTTGTGAAACCACCAATGGATATTGTCGTTCAATTTCCATGTTTAGTTGATATCGACTGTCTGGTCCTAAACAGGAGATCTGGTTCAAAGAGGGTCTCAGAATTTACAGTTTTTACGGCTAATTCTAGGCCAGTTGTGGAGAACGAGGAACGCAAAATTGCATCCCCTTCTAATTCTTCGACTGATCACGAACGAAAATATATGCTGGCCAAGACAAAGAGTAGAGCTAAGTTCCCAACAGAAGAGGCTGAAATTCCGAGTGCGTTTCCTTTTGAATATGAACCAAATTATTCAGACACAAGCGTCAGGAAGGAGAATCTCACAAATCTTACTATGGTTGGGAAACTGAATTCAAGAACAGCAACAAACGATGTTGCGATATTCAGGAATGCAAGGAATTCTAATGGCAAGGGAATTGAATTTGAGAAACAAGGCAACCAAACAATTAACTTTTTTTCTCTGCAGTTTCTTTATGGCACCAGTCATCTTATTATAAGAATATTCAGGACTGAGGGGTCAACGGTAGCTGCTGTGAAGAGTTTAGAAGTTTGGGGGAGACCCTCTAGAAATAATGGAAGGCTTGTGAATAACCATGTTTATGGTTTAGTTAAGAAAATGAAGAAACAACAGGACCTTAAAAGATCAAGCAATGGGTGTAAAAAGTTGACTAGCAATCCCGAAAAGAAACTGAACGAAAATGATAAGCCAGGAACTTCCATTAAAGAAACTTGTGTTGAAGCTAGCAATGCTTGTAGCAGTTTAGAACCTGTCACATCAAAAATTATTCCTGAAGAATTTATAGACCCTATAACTTTTGAAATAATGGTCCTACCAGTGCTACTGCCATCAGGACATACAATAGATTCTAGTACATTGGAGAAATGCACACAAGCTGATAAGAACAACGGAAGGGATCCATTAGACCCATTCACTGGCAAAACATTGACAGAAATAAATAAAACAATTCCAAATACTGCTTTGAAATTTAGACTGGATGAATTCCTGTTAAAAAACAATGTGACTTTGGGTGGGGATGTTATGGGACAAACCAGTGGGGTGAATTTGAAGAATGGTTTCAGTACAGTTGAAAGCATGAAATGCGTGAAGAGGAAATTGGATAACAACCCAGAAATTGTCAGCGCTAAAAAGCATTTTAGAATCTCACATATCATCAAAGGAACACATGATGAAAAATACTACAAGGACCGACATGAAAATTTAAAAGATAGCAAATTAAGAATGGATGATGATGTTAAAAAAGACTTCTTTCCTGATACTAGTCCAAAAGAGCCTATTTCTTGTGAAAAGATGCTTGGAAATAAACTGCAAATTGTACAAGATAAAACACATACAGCTAGGGCACATGATTCCAGCAATGACACTACAAAGATTGTTGCAAAGTGCTTTGGAAGCATTTATGAACCAGAGCAACAAAACGAAGGTGATACTGTTTCATCAAAATTTTCACATGAGCAGTCTTTGAAAGACAGCCTCGAAACAGCATTACAGAAGATGATGAGTAGTTTCACAAAGCCATGTGCAAAATCACAGCAAGAAAATTCCACTACAAAAATATCTTGTTCCATTTGCAAAGTTTCCGAGAAAGATGCTGGTTTCTTTAAATTGCCTTGTAATCATTTGATTTGCAGAACATGTCTAACTAAAAATGCAGCTCAAAATAAATGTAAATTATGTCTCAAACCATTTTCCAACTCTGAAATAACAAGGGTACATTTTTCATCATATTTCAACAATGCCTGATGTTGTAGTCTGCGGTGTGACCTCTACAGGGGGAGTTTCCCTTCAATTTTTCCTCCCCTGTAGAGGTCGCACCGNNTCACAGCAAGAAAATTCCACTACAAAAATATCTTGTTCCATTTGCAAAGTTTCCGAGAAAGATGCTGGTTTCTTTAAATTGCCTTGTAATCATTTGATTTGCAGAACATGTCTAACTAAAAATGCAGCTCAAAATAAATGTAAATTATGTCTCAAACCATTTTCCAACTCTGAAATAACAAGGGTACATTTTTCATCATATTTCAACAATGCCTGATGTTGTAGTCTGCGGTGTGACCTCTACAGGGGGAGTTTCCCTTCAATTTTTCCTCCCCTGTAGAGGTCGCACCGCAGACTACTGATGTTGAAGATAAAATGACAAGTGTTTCAAATATCTGTGTTTTCCTTGCCTTCAATTCTCCAAGTGATGAGTTTGCTTGTTAGAATGTGTCACATACTAAAAATCTTACATATTCTTTATGAACAACTCCAAAGGATAGATTTTATTGTTGGCCAGAAAAGGAAACATTCATACAGTAGAACTCTACAAGGAATATCAACAGTCAATTTCTCTGTGTGCAGAGTGACTCTAGCAACTGGATCTTGTAACACTGTTTGTCACACTAAAAATTCTTCATGCTAAAGATTCTTCTTACTAAAAATTTGTCATACTCAAAAACTTCCCAAAAATCTCTGAAACACATCAAACAAAGATCTTTCTCCTTCACAAGATTCACAAAATCATGGAACGAGACAATAAAACGTGATTAAGCTTCTATAAATACATAGGAAACATATGAAGGATTTTAATATGATAGCACATTTACAGCATATTTGTTGGCCTATCATTACAAAAAGAACATTGTGAAAATTCTTCAAACAAAAAATTTTGTACAATGAGCTTTAATCTCAAGGGTGGACTTGCACAAGTTGTCTCTTTCTTCCTTACAAGACGACGTGCGCAAGTCCATTCCAAggggtactctaatatatctagtttagggatgctcactaggttactgtatttttttgtgtctaaaatttaggcaaagcttatttttttgggtcaattttgtacagttattgttttggttcctgaaattcggggttacttttttggatatcaaatatggggaaaaataaaaaaatgggacaaacaaaagttacaagcaaattaaaatcaagtaacattcaaaatctaatcagttggggcactttcccacagatttaagataccactgacttcaaaacgattgggtatgttggatcagaaaaaattattgattgggtctacttttgtgctacaaattatttttttgggttgatgctttgtaccttagcccgagctccctatcctaaacatcagtaccccccTGCGCCATCAATATTCCATACGTTTTCTGTTACATACAACAACTTCACAACTCTTACTGAAGTCTACTCTATATACAGTTTGTTGCTATTAGAATTTAAATGCATACAGAATTTCCAAATACTAAATAGTTGTCTTAAGTTGTTTACTACAGTATTTACTGACTGCTGAAAATAAGAACATACAGAGAAACGATAAACAATAACTTGCAAAAGGAAACGTAGCACCGACTTAGCATAAATAAAGAATTATAAATTTAATTATAAACAAATCATCCTGTATGATTTCATCTTTTTTGTTGACCTTTCCCGTTGAATTATAGCAGAGTAAAAAACCAGCAAACTTTGATCATCGCTTTCGGCCGTTTTGAAGGGTTTTCGAAGGGGTCCTTTCCAGAAAATACTTTTAATAATTTTAGAACGCTATTGCCAATCTACGACAGGTAACTTAAAATGTAATGAAACATATCCGCTACTAAATAGGACATTTTCTAATATCACCGCTTCCAAAATCCAGAGGACGGTAGCCTTTCAAACGTGGATTGTGTTTCTTTTACTCACCCAGTGTTCTGAAAAGATCTATCAAATAGAGACTCTTGACTGCT

Protein

Gene family

Family type	Membership / link
Ubiquitin family	E3\|E3 activity RING\|U-box · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13445 all species →	zf-RING_UBOX	RING-type zinc-finger	Domain	Interproscan
PF19318 all species →	DUF5918	Family of unknown function (DUF5918)	Family	Interproscan
PF04564 all species →	U-box	U-box domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027370 all species →	Domain	Zinc finger, RING-type, eukaryotic	Interproscan
IPR003613 all species →	Domain	U-box domain	Interproscan
IPR017907 all species →	Conserved_site	Zinc finger, RING-type, conserved site	Interproscan
IPR013083 all species →	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR001841 all species →	Domain	Zinc finger, RING-type	Interproscan
IPR045696 all species →	Domain	RING finger protein 37, N-terminal	Interproscan
IPR039847 all species →	Family	RING finger protein 37	Interproscan
IPR039925 all species →	Domain	RNF37, RING-Ubox	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13492 all species →	RING FINGER PROTEIN 37	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004842 all species →	Molecular Function	ubiquitin-protein transferase activity	Interproscan
GO:0016567 all species →	Biological Process	protein ubiquitination	Interproscan
GO:0000209 all species →	Biological Process	protein polyubiquitination	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0031625 all species →	Molecular Function	ubiquitin protein ligase binding	Interproscan
GO:0034450 all species →	Molecular Function	ubiquitin-ubiquitin ligase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K10600	UBOX5, UIP5; U-box domain-containing protein 5	-	Ubiquitin system	ko04121	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.