Gene detail

Detailed information of scaffold372.g1.t3 in Aurelia aurita complex sp. Pacific

Genomic Location: scaffold372:1...76684
NR annotation: no NCBI-NR hit recorded
Species Aurelia aurita complex sp. Pacific · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

scaffold372.g1.t3

acatgcgcaatgagagctgctgtctgagaactgaaggcggaatagaaattccacgaaactgccgatacaggacagagagatatcacagcattttgcacatatgcatggacagttgaagatttttaggctgacagattgtattacgaataaggctctgtaccgttaatgtcattgatacatgatttgttgaattcgttccaagatatcgattctcaataaagctggaagaaaatttaggcccactccactaatacacaagaaagaagaacagtccatgagttgagttgatattggtttgcggtcactgcgtattattcgccaaaatgacaatgggaactcagaaaagatgtctcagataacgtctctatccatgggaagtttgctgcattggtattattgaacgaaaattggtgaaagcagaattgccagtgcatcaaaactgcttccgtgtatccttctgcctaaaaaggtgtcaacatggcggcagatctggacgaaataccaacgatagagagatttttagagggtttgaaattatcacagttaattgaattgtttcatactaaagagatacacaacgttcatcaatgcattgattttgaagatgaagaactgaaggagttggggattgaaaaaccaggtcacaggaagcgaatatatgtagaactgaagagtttgcggatgaggttgaagcttgaacaacaaaatggaacacaatctacagtgacagaaattgttaacaacagtgtagaacaaccaggtcaaaatgcaatatcagaagaacacatgttatatgaaaatgaaactaaagaagaggatgaaccaccccctgttatcccagtaaaaaagaattcaagagtacagcctccaattccacttccaaggaaaggctcagcacctcatatcccagtacactctcctgtgtcacctaccaacaaaatgccacaaagcccaaccacaaccactgatgaacctcaacatgaatcttacccacatgaagttcctcctatccccgttcatgttgcggctgctaaacctcgtgatctacctcaaccttttgaagaaccttctgaaacagctatttcaagcccctctcatcctgtgccaaatgaggttgcaaatgttggcagtttgtcacctacaaaggccgcgccacccataccagctagagctgaccttaatgaggttggtgaaaatgagaatcaggagccagcagtcagtactgattataatggttgtgatcagctcaaaaataacactgaatcaaatgcatcaagtgatatatttcataaccaaagtattggcaacactggaagagcagcaagtcttgacatagagcataattctttaggtgacacacctaaaagcctgcatccagctgttcctttgagacctgcaattacaagagctgcttctgtgccagtaaagaagagacttgctcctaagccaccagcaaaaggtgcaagcatgaacaaagcgataggtgataaactgaactcgatgcttcaagggcaaagaagagagcctccaaaaacttatgatgaaaatatcagtaaagtaaaaagtacacaagggagtgatccccaaaccaatcaacctgcagaagagaattctatttatgagaccattgctgacctggcaccagaaatgagaccaacagcaccatctatagtaaaagatgagggttttcgaaataaattggccaatatccaattttcaccaaaacgaccagcaccagggccacctattgttgtcactccagatggaagagatgatgatggctcatctgaaagtgaggaagaaaccactaatattgagaaacaagactcaagttcagggatgaaaagcttgctgtcagatgaagagttgcaagagaagggaaagagtttctcgagatctggctacttggacaagcgtggcggtcaaaacaacgatcgccgacttcaaaaacgttgggttgaattcaatggaacagatcttcgatattacaaaccaaatgacaaggacaaatctgattgtttgcaaatagttccgatcagccgaatgacaggtgtcaaaattgacgttgtgggtaaaaagcatcagttcagcttggacactccaaatcgcacatttattttcgcttcagaagatgtcaacgaagttagcctttggtcgaatattcttatgcaagctatcattcaccacaaggagattaaagatttattggagtctgtgcagtattcagctgctcttgctataacaggaacatggaggggaacatccagagaaaaactgtacactgagcttggctgggagtcattaaattccaggaggtggagtagacgccttaccttgttctataagataatgaataatctcacccctttgtacacaaagaagcctatcccatcacttcatcagtcgaactattcttttcgcaaccaggatgtaattggtcgaataagggcaagaacagaaaaatttcaatctaccttctatccaaactgcctatctgaatggaatgaacttgatcctgaaataaggctcgctccgtctagttcagcgaaggagacggaggacccagtaaaagcagctgcagaatcaatcggtggatccatggctaaccctgataaagagggctggttgaaaaaacagggccacaatatgaggcaagactggaaatcaagatatgttgttgtcaaaggttgcaacgttgcttattaccggggctatgaggactataaacaagatatacagatcaactgtcttccaatggccttatccactctaaagatggattcttcacgctgcagattaacgatcaagaccgcacaggaaaaggatttcgtattcgaggcaagtgatgattcctcgtaccaatcatggatgaatgcctttcaaaccagcattcaaatggcttttgctgatatgactgttctcgaagcaatacaagagaatgcaagcaataataattgtgcagattgtggaaagagaaacccaatctatgcatctgtgaatctattggtcgttgtgtgtgatcagtgcatcggatgtcatcgaagacttggtgcccagattacgaaatcaagatcggtcctgatggacttgaaaatttggagtgagccattaaaaaagctaatgcaggttgttggcaatgcaaatgcgaataaattttgggagcgaaagatgcctgaagatgacaagattacccctgatacatcaagtgacgaaaggtacgaattcatcgtatcgaagtacaaagagaagagatatatcaatttttcacagtattatggccagaaagacaaccttggacaagctctgcgagcaaacgtcgtgacagatgatatcataacaacgttgcaactcattgtttgtggagcatctaaaattttactcagccagtacattttatcttttttcgtagcttatgacctagcaactgaggcaaaccaagaactacaaatggaacttctacgtcaattcaatggacatttgactgctgaagaacgagaaaaggaggagagagaagaagcggagcgcctgaggaaagcaaatgaagagatagcagcatctgctgctcgacagcctgcctatgaaaagcaaggtgtcttactcaaacgaggtccaaagaacaatgagccgtggaagcaaagagtgttttacttacaaaagagaagtctttcctaccagaaggagaaagaaagggaagtgattgatttaacagaagctgttgatattttacttggagcaaacgagaatgaaccaagaagtataaacatcgtcttaccgaccaggacatactatctaaaaggagagacaattgccgatgctgaatcttggtactgggcaataaaaaataaacaggtatttggagtcgccatcgaaaaccaagagctaactgggaaaagtgttccgctgttggttgctaaatgtgtagactatgttgaaacctacgcactcactgaagagggtatctaccgaaaaaatggctcaaccataacgatcaaaaatttgaagctcacattcaatcaagatgctccaaatgttcgactgacgtttgatgattacccagtagtccatgatatttgtggagttttgaagctttacttcagagaaggtcttcttgagccattaatgacaaatgctttgtataaagagtttattgcgaattcaggtatagtaacgaaatacagcgatcaaaacaaaatgacgatgctgaacgttattcgtgtgtttgcaccaattatccttaatcagggtaaatctacaaatgagcgtgaactagctcgggaatatcagattttggacgacattctaacgtaccatgcttatctatttgacattgatacccaagagactaaaagaagagagcagcaaatagaacaaggcatgcagaaaatgaaagacgcgatgcaggaaattgtcaaggtcaccaacgtgaatagcaaaacatgcgcaagtgaagtttgtttatacatcatacgattattatcattgtcttatgataacaactgggcattatttgaaagagtgggaattgcaggcttcgagcggccgctgcattccaaagatcttgtatttcctttgttaatggaaagtggcaaatggggtgatcaatcaagatatacgctatgtattaagagcaattacgttgcagaaaagtctgcaccataccaagatggaaaactgagtttgacaggcaaactacatcttaggaaaaatgacagtagttggagagagcaattcttcatggtaaaatttggggatcttgttgttttcacaaaagagcgtggctccgaagttgaaagattgtcaatacaccagtggactttgtacgttggtaatgatgagagatcgaaaaagaagccgccgaaaaagcatggcttcacattaatcaatggtgatgaaagacgatgtatgtgcacagatgatgaaaaatatatgtacacgtggattagcagtattctacaaataaagtatccgggaggaatttggacgaatcttaatgaagctgaaagacgaatgactatggatacgacaggtgtggtgcctcttgaccagcgaaagagtgtatacttgggtagacag

Transcript

scaffold372.g1.t3

ACATGCGCAATGAGAGCTGCTGTCTGAGAACTGAAGGCGGAATAGAAATTCCACGAAACTGCCGATACAGGACAGAGAGATATCACAGCATTTTGCACATATGCATGGACAGTTGAAGATTTTTAGGCTGACAGATTGTATTACGAATAAGGCTCTGTACCGTTAATGTCATTGATACATGATTTGTTGAATTCGTTCCAAGATATCGATTCTCAATAAAGCTGGAAGAAAATTTAGGCCCACTCCACTAATACACAAGAAAGAAGAACAGTCCATGAGTTGAGTTGATATTGGTTTGCGGTCACTGCGTATTATTCGCCAAAATGACAATGGGAACTCAGAAAAGATGTCTCAGATAACGTCTCTATCCATGGGAAGTTTGCTGCATTGGTATTATTGAACGAAAATTGGTGAAAGCAGAATTGCCAGTGCATCAAAACTGCTTCCGTGTATCCTTCTGCCTAAAAAGGTGTCAACATGGCGGCAGATCTGGACGAAATACCAACGATAGAGAGATTTTTAGAGGGTTTGAAATTATCACAGTTAATTGAATTGTTTCATACTAAAGAGATACACAACGTTCATCAATGCATTGATTTTGAAGATGAAGAACTGAAGGAGTTGGGGATTGAAAAACCAGGTCACAGGAAGCGAATATATGTAGAACTGAAGAGTTTGCGGATGAGGTTGAAGCTTGAACAACAAAATGGAACACAATCTACAGTGACAGAAATTGTTAACAACAGTGTAGAACAACCAGGTCAAAATGCAATATCAGAAGAACACATGTTATATGAAAATGAAACTAAAGAAGAGGATGAACCACCCCCTGTTATCCCAGTAAAAAAGAATTCAAGAGTACAGCCTCCAATTCCACTTCCAAGGAAAGGCTCAGCACCTCATATCCCAGTACACTCTCCTGTGTCACCTACCAACAAAATGCCACAAAGCCCAACCACAACCACTGATGAACCTCAACATGAATCTTACCCACATGAAGTTCCTCCTATCCCCGTTCATGTTGCGGCTGCTAAACCTCGTGATCTACCTCAACCTTTTGAAGAACCTTCTGAAACAGCTATTTCAAGCCCCTCTCATCCTGTGCCAAATGAGGTTGCAAATGTTGGCAGTTTGTCACCTACAAAGGCCGCGCCACCCATACCAGCTAGAGCTGACCTTAATGAGGTTGGTGAAAATGAGAATCAGGAGCCAGCAGTCAGTACTGATTATAATGGTTGTGATCAGCTCAAAAATAACACTGAATCAAATGCATCAAGTGATATATTTCATAACCAAAGTATTGGCAACACTGGAAGAGCAGCAAGTCTTGACATAGAGCATAATTCTTTAGGTGACACACCTAAAAGCCTGCATCCAGCTGTTCCTTTGAGACCTGCAATTACAAGAGCTGCTTCTGTGCCAGTAAAGAAGAGACTTGCTCCTAAGCCACCAGCAAAAGGTGCAAGCATGAACAAAGCGATAGGTGATAAACTGAACTCGATGCTTCAAGGGCAAAGAAGAGAGCCTCCAAAAACTTATGATGAAAATATCAGTAAAGTAAAAAGTACACAAGGGAGTGATCCCCAAACCAATCAACCTGCAGAAGAGAATTCTATTTATGAGACCATTGCTGACCTGGCACCAGAAATGAGACCAACAGCACCATCTATAGTAAAAGATGAGGGTTTTCGAAATAAATTGGCCAATATCCAATTTTCACCAAAACGACCAGCACCAGGGCCACCTATTGTTGTCACTCCAGATGGAAGAGATGATGATGGCTCATCTGAAAGTGAGGAAGAAACCACTAATATTGAGAAACAAGACTCAAGTTCAGGGATGAAAAGCTTGCTGTCAGATGAAGAGTTGCAAGAGAAGGGAAAGAGTTTCTCGAGATCTGGCTACTTGGACAAGCGTGGCGGTCAAAACAACGATCGCCGACTTCAAAAACGTTGGGTTGAATTCAATGGAACAGATCTTCGATATTACAAACCAAATGACAAGGACAAATCTGATTGTTTGCAAATAGTTCCGATCAGCCGAATGACAGGTGTCAAAATTGACGTTGTGGGTAAAAAGCATCAGTTCAGCTTGGACACTCCAAATCGCACATTTATTTTCGCTTCAGAAGATGTCAACGAAGTTAGCCTTTGGTCGAATATTCTTATGCAAGCTATCATTCACCACAAGGAGATTAAAGATTTATtggagtctgtgcagtattcagctgctcttgctataacaggaacatggaggggaacatccagagaaaaactgtacactgagcttggctgggagtcattaaattccaggaggtggagtagacgccttaccttgttctataagataatgaataatctcacccctttgtacacaaagaagcctatcccatcacttcatcagtcgaactattcttttcgcaaccaggatgtaattggtcgaataagggcaagaacagaaaaatttcaatctaccttctatccaaactgcctatctgaatggaatgaacttgatcctgaaataaggctcgctccgtctAGTTCAGCGAAGGAGACGGAGGACCCAGTAAAAGCAGCTGCAGAATCAATCGGTGGATCCATGGCTAACCCTGATAAAGAGGGCTGGTTGAAAAAACAGGGCCACAATATGAGGCAAGACTGGAAATCAAGATATGTTGTTGTCAAAGGTTGCAACGTTGCTTATTACCGGGGCTATGAGGACTATAAACAAGATATACAGATCAACTGTCTTCCAATGGCCTTATCCACTCTAAAGATGGATTCTTCACGCTGCAGATTAACGATCAAGACCGCACAGGAAAAGGATTTCGTATTCGAGGCAAGTGATGATTCCTCGTACCAATCATGGATGAATGCCTTTCAAACCAGCATTCAAATGGCTTTTGCTGATATGACTGTTCTCGAAGCAATACAAGAGAATGCAAGCAATAATAATTGTGCAGATTGTGGAAAGAGAAACCCAATCTATGCATCTGTGAATCTATTGGTCGTTGTGTGTGATCAGTGCATCGGATGTCATCGAAGACTTGGTGCCCAGATTACGAAATCAAGATCGGTCCTGATGGACTTGAAAATTTGGAGTGAGCCATTAAAAAAGCTAATGCAGGTTGTTGGCAATGCAAATGCGAATAAATTTTGGGAGCGAAAGATGCCTGAAGATGACAAGATTACCCCTGATACATCAAGTGACGAAAGGTACGAATTCATCGTATCGAAGTACAAAGAGAAGAGATATATCAATTTTTCACAGTATTATGGCCAGAAAGACAACCTTGGACAAGCTCTGCGAGCAAACGTCGTGACAGATGATATCATAACAACGTTGCAACTCATTGTTTGTGGAGCATCTAAAATTTTACTCAGCCAGTACATTTTATCTTTTTTCGTAGCTTATGACCTAGCAACTGAGGCAAACCAAGAACTACAAATGGAACTTCTACGTCAATTCAATGGACATTTGACTGCTGAAGAACGAGAAAAGGAGGAGAGAGAAGAAGCGGAGCGCCTGAGGAAAGCAAATGAAGAGATAGCAGCATCTGCTGCTCGACAGCCTGCCTATGAAAAGCAAGGTGTCTTACTCAAACGAGGTCCAAAGAACAATGAGCCGTGGAAGCAAAGAGTGTTTTACTTACAAAAGAGAAGTCTTTCCTACCAGAAGGAGAAAGAAAGGGAAGTGATTGATTTAACAGAAGCTGTTGATATTTTACTTGGAGCAAACGAGAATGAACCAAGAAGTATAAACATCGTCTTACCGACCAGGACATACTATCTAAAAGGAGAGACAATTGCCGATGCTGAATCTTGGTACTGGGCAATAAAAAATAAACAGGTATTTGGAGTCGCCATCGAAAACCAAGAGCTAACTGGGAAAAGTGTTCCGCTGTTGGTTGCTAAATGTGTAGACTATGTTGAAACCTACGCACTCACTGAAGAGGGTATCTACCGAAAAAATGGCTCAACCATAACGATCAAAAATTTGAAGCTCACATTCAATCAAGATGCTCCAAATGTTCGACTGACGTTTGATGATTACCCAGTAGTCCATGATATTTGTGGAGTTTTGAAGCTTTACTTCAGAGAAGGTCTTCTTGAGCCATTAATGACAAATGCTTTGTATAAAGAGTTTATTGCGAATTCAGGTATAGTAACGAAATACAGCGATCAAAACAAAATGACGATGCTGAACGTTATTCGTGTGTTTGCACCAATTATCCTTAATCAGGGTAAATCTACAAATGAGCGTGAACTAGCTCGGGAATATCAGATTTTGGACGACATTCTAACGTACCATGCTTATCTATTTGACATTGATACCCAAGAGACTAAAAGAAGAGAGCAGCAAATAGAACAAGGCATGCAGAAAATGAAAGACGCGATGCAGGAAATTGTCAAGGTCACCAACGTGAATAGCAAAACATGCGCAAGTGAAGTTTGTTTATACATCATACGATTATTATCATTGTCTTATGATAACAACTGGGCATTATTTGAAAGAGTGGGAATTGCAGGCTTCGAGCGGCCGCTGCATTCCAAAGATCTTGTATTTCCTTTGTTAATGGAAAGTGGCAAATGGGGTGATCAATCAAGATATACGCTATGTATTAAGAGCAATTACGTTGCAGAAAAGTCTGCACCATACCAAGATGGAAAACTGAGTTTGACAGGCAAACTACATCTTAGGAAAAATGACAGTAGTTGGAGAGAGCAATTCTTCATGGTAAAATTTGGGGATCTTGTTGTTTTCACAAAAGAGCGTGGCTCCGAAGTTGAAAGATTGTCAATACACCAGTGGACTTTGTACGTTGGTAATGATGAGAGATCGAAAAAGAAGCCGCCGAAAAAGCATGGCTTCACATTAATCAATGGTGATGAAAGACGATGTATGTGCACAGATGATGAAAAATATATGTACACGTGGATTAGCAGTATTCTACAAATAAAGTATCCGGGAGGAATTTGGACGAATCTTAATGAAGCTGAAAGACGAATGACTATGGATACGACAGGTGTGGTGCCTCTTGACCAGCGAAAGAGTGTATACTTGGGTAGACAG

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00620 all species →	RhoGAP	RhoGAP domain	Domain	Interproscan
PF00536 all species →	SAM_1	SAM domain (Sterile alpha motif)	Domain	Interproscan
PF00169 all species →	PH	PH domain	Domain	Interproscan
PF01412 all species →	ArfGap	Putative GTPase activating protein for Arf	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000198 all species →	Domain	Rho GTPase-activating protein domain	Interproscan
IPR001660 all species →	Domain	Sterile alpha motif domain	Interproscan
IPR001164 all species →	Domain	Arf GTPase activating protein	Interproscan
IPR037278 all species →	Homologous_superfamily	ARFGAP/RecO-like zinc finger	Interproscan
IPR029071 all species →	Homologous_superfamily	Ubiquitin-like domain superfamily	Interproscan
IPR001849 all species →	Domain	Pleckstrin homology domain	Interproscan
IPR013761 all species →	Homologous_superfamily	Sterile alpha motif/pointed domain superfamily	Interproscan
IPR011993 all species →	Homologous_superfamily	PH-like domain superfamily	Interproscan
IPR052227 all species →	Family	Arf-GAP with Rho-GAP domain, ANK repeat and PH domain-containing protein	Interproscan
IPR008936 all species →	Homologous_superfamily	Rho GTPase activation protein	Interproscan
IPR038508 all species →	Homologous_superfamily	ArfGAP domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45899 all species →	RHO GTPASE ACTIVATING PROTEIN AT 15B, ISOFORM C	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0007165 all species →	Biological Process	signal transduction	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005096 all species →	Molecular Function	GTPase activator activity	Interproscan
GO:0005547 all species →	Molecular Function	phosphatidylinositol-3,4,5-trisphosphate binding	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for scaffold372.g1.t3.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.