Gene detail

Detailed information of scaffold377.g9.t2 in Aurelia aurita complex sp. Pacific

Genomic Location: scaffold377:91010...114594
NR annotation: no NCBI-NR hit recorded
Species Aurelia aurita complex sp. Pacific · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

scaffold377.g9.t2

cgttgtaattttctttataataaatcaattataagaagctgcaggcttattacaatttgtggctttcattcccccaagtcgtttactaatattacttattactgtaatgcagtaaactggggacttgacttagttgtcttcaaagaaaattaaaggagaatcattaattcgttgtctttccctttcaagatgacttgtgcaagtccatgttaattgctgagctcagaaaagaaattgaagtaaattgagctctgctgagggtgtttttcgatttgcaaaagcatcgtcaacaaaggcaaattcaagaggcatcacactccaatacaatctggtgctatttagcaaaaaccccttgcttttcaaggaattggtaacagttccctatacaccctcttgcttttcaaatttcgtaggttttttcgacggagtgatatatcactcatgttcgaagtagcttcagcatgatttcttgcgtatttttcagtcaggcctgctctgatacacgttttttctttcgtaagaaactgggaaaagcccacagaatttaatttttcttattttcaagtgaaaattaagctttttagttctaaaagtttcttattgtgtttcttattttttagatgcatgtagtttcttccacggctacgtattcgtttcttgacagacagcacactttttatcaagaaagagagttcactttgcaaaacacaaatttatcatgaatattactaaaaaataaaggcttaacgataatttcccaagacatctttgtatttggctttaaatgtttgttagcaattctcaggcatagtactagagtttcttaaatttttcgcaatcctagtacccttttcttatgaaccagtttcttatataaaaacgtgtatgtaaattcgaagttaaaaaacttttcagtctttagttatgagtagaaaagtgttttggacatacagcctatagaagaatttttcttctctgtaggcctaattgtccgagctcaaagcaaaacctttattagcggctctctgcgaattaaaaaattgttctttaactcccctgatcttgacaaaggctctccaaaaaattacgcttatgcgagtggttcgagacaacaacatcgtcgtaattgttggagaaactggatcagggaagacaacccagttaacacagtacatgcatgaagatggttacacgaattacggaatgattggatgtacgcagcccagacgtgtagctgccatgtcagtagccaagcgtgtcagcgaagagatgaaagtgaaattaggagaagaagttggatacgcgattcgatttgaagatgttaccagtgagaaaacgatcataaaatacatgacggatggtatcttgcttcgagaatcattaaaagaggctgatctggatcattacagtgttattatcatggacgaggctcacgaaagatctttaaacactgatgtactttttggactcctaagagaggttgtttctcggcggaatgacttgaaactaatcgtcacatctgctacaatggattctacaaagttctcaaatttctttggaaatgttccagtttatattataccaggtcgtacatttcctgttgatgttctgtacagcaagtcgaccattgatgattatgttgatggtgctgttaaacaggcgttgcaaattcaccttacccctgctaaaggagatcttcttgttttcatgcctggacaggaagacattgaagtcacatgtgaccttatttcagaaaggctggctgaggttgacgaggcaccaccattagcagttcttccaatttattcgcaactgccgagtgatttacaagcaaagatatttgaaaaggctcctgatggagttcgaaagtgcattgttgcaaccaatatcgcagaaacttctttgacagttgacggtataatgttcgttattgattctggatattgtaaactgaaagtattcaatccaaggattggtatggattcattgcaagtcttccccattagccaggccaactcaaatcaaagatcagggagagctggcagaacaggaccaggtcaagcatataggttgtacacagaacatcaatataaggaggaaatgctgaaggccactgttccagaaatccaaagaacaaatctagcaaatgttgtgttgctgttgaagtcgttgaatgtggaaaatttattggaatttcacttcatggaccctcctcctcaggataacatcttgacatcaatgtatcaattatgggtgcttggagcgttagacaatactggatctttgacgccacttggaagaaagatggtggaatttccattggatcccgcactatcgaaaatgttgataacatctcttgagatggggtgcagcgatgaaatcttgatcattgtatcgatgttgtcagtgccttcgatattctatcggccaaaaggtcgcgaagaagacagcgacaatgccagagagaaatttcaggtccctgaaagtgatcatttaacgctgctacatgtttaccaacaatggaaagcaaatgaatattctgctggctggtgtaacgaacatttcattcatgtcaaagcaatgcgaaaggttcgtgaagttcgttcacaattgaaggatattatgcatcagttaaagatggaaataacgtcatcaagctttgaatgggacgtcattcgaaactgtatttgttctgcttatttccatcaagcagctaggcttaaccctttacgtctttgagtgtcagtggtgggcccaccaaaaaatttagctaaaaatt

Transcript

scaffold377.g9.t2

cgttgtaattttctttataataaatcaattataagaagctgcaggcttattacaatttgtggctttcattcccccaagtcgtttactaatattacttattactgtaatgcagtaaactggggacttgacttagttgtcttcaaagaaaattaaaggagaatcattaattcgttgtctttccctttcaagatgacttgtgcaagtccatgttaattgctgagctcagaaaagaaattgaagtaaattgagctctgctgagggtgtttttcgatttgcaaaagcatcgtcaacaaaggcaaattcaagaggcatcacactccaatacaatctggtgctatttagcaaaaaccccttgcttttcaaggaattggtaacagttccctatacaccctcttgcttttcaaatttcgtaggttttttcgacggagtgatatatcactcatgttcgaagtagcttcagcatgatttcttgcgtatttttcagtcaggcctgctctgatacacgttttttctttcgtaagaaactgggaaaagcccacagaatttaatttttcttattttcaagtgaaaattaagctttttagttctaaaagtttcttattgtgtttcttattttttagatgcatgtagtttcttccacggctacgtattcgtttcttgacagacagcacactttttatcaagaaagagagttcactttgcaaaacacaaatttatcatgaatattactaaaaaataaaggcttaacgataatttcccaagacatctttgtatttggctttaaatgtttgttagcaattctcaggcatagtactagagtttcttaaatttttcgcaatcctagtacccttttcttatgaaccagtttcttatataaaaacgtgtatgtaaattcgaagttaaaaaacttttcagtctttagttatgagtagaaaagtgttttggacatacagcctatagaagaatttttcttctctgtaggcctaattgtccgagctcaaagcaaaacctttattagcggctctctgcgaattaaaaaattgttctttaactcccctgatcttgacaaaggctctccaaaaaattacgCTTATGCGAGTGGTTCGAGACAACAACATCGTCGTAATTGTTGGAGAAACTGGATCAGGGAAGACAACCCAGTTAACACAGTACATGCATGAAGATGGTTACACGAATTACGGAATGATTGGATGTACGCAGCCCAGACGTGTAGCTGCCATGTCAGTAGCCAAGCGTGTCAGCGAAGAGATGAAAGTGAAATTAGGAGAAGAAGTTGGATACGCGATTCGATTTGAAGATGTTACCAGTGAGAAAACGATCATAAAATACATGACGGATGGTATCTTGCTTCGAGAATCATTAAAAGAGGCTGATCTGGATCATTACAGTGTTATTATCATGGACGAGGCTCACGAAAGATCTTTAAACACTGATGTACTTTTTGGACTCCTAAGAGAGGTTGTTTCTCGGCGGAATGACTTGAAACTAATCGTCACATCTGCTACAATGGATTCTACAAAGTTCTCAAATTTCTTTGGAAATGTTCCAGTTTATATTATACCAGGTCGTACATTTCCTGTTGATGTTCTGTACAGCAAGTCGACCATTGATGATTATGTTGATGGTGCTGTTAAACAGGCGTTGCAAATTCACCTTACCCCTGCTAAAGGAGATCTTCTTGTTTTCATGCCTGGACAGGAAGACATTGAAGTCACATGTGACCTTATTTCAGAAAGGCTGGCTGAGGTTGACGAGGCACCACCATTAGCAGTTCTTCCAATTTATTCGCAACTGCCGAGTGATTTACAAGCAAAGATATTTGAAAAGGCTCCTGATGGAGTTCGAAAGTGCATTGTTGCAACCAATATCGCAGAAACTTCTTTGACAGTTGACGGTATAATGTTCGTTATTGATTCTGGATATTGTAAACTGAAAGTATTCAATCCAAGGATTGGTATGGATTCATTGCAAGTCTTCCCCATTAGCCAGGCCAACTCAAATCAAAGATCAGGGAGAGCTGGCAGAACAGGACCAGGTCAAGCATATAGGTTGTACACAGAACATCAATATAAGGAGGAAATGCTGAAGGCCACTGTTCCAGAAATCCAAAGAACAAATCTAGCAAATGTTGTGTTGCTGTTGAAGTCGTTGAATGTGGAAAATTTATTGGAATTTCACTTCATGGACCCTCCTCCTCAGGATAACATCTTGACATCAATGTATCAATTATGGGTGCTTGGAGCGTTAGACAATACTGGATCTTTGACGCCACTTGGAAGAAAGATGGTGGAATTTCCATTGGATCCCGCACTATCGAAAATGTTGATAACATCTCTTGAGATGGGGTGCAGCGATGAAATCTTGATCATTGTATCGATGTTGTCAGTGCCTTCGATATTCTATCGGCCAAAAGGTCGCGAAGAAGACAGCGACAATGCCAGAGAGAAATTTCAGGTCCCTGAAAGTGATCATTTAACGCTGCTACATGTTTACCAACAATGGAAAGCAAATGAATATTCTGCTGGCTGGTGTAACGAACATTTCATTCATGTCAAAGCAATGCGAAAGGTTCGTGAAGTTCGTTCACAATTGAAGGATATTATGCATCAGTTAAAGATGGAAATAACGTCATCAAGCTTTGAATGGGACGTCATTCGAAACTGTATTTGTTCTGCTTATTTCCATCAAGCAGCTAGGCTTAACCCTTTACGTCTTTGAGTGTCAGTGGTGGGCCCACCAAAAAATTTAGCTAAAAATT

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04408 all species →	HA2_N	Helicase associated domain (HA2), winged-helix	Domain	Interproscan
PF00271 all species →	Helicase_C	Helicase conserved C-terminal domain	Domain	Interproscan
PF21010 all species →	HA2_C	Helicase associated domain (HA2), ratchet-like	Domain	Interproscan
PF00270 all species →	DEAD	DEAD/DEAH box helicase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR048333 all species →	Domain	Helicase associated domain (HA2), winged-helix domain	Interproscan
IPR001650 all species →	Domain	Helicase, C-terminal domain-like	Interproscan
IPR007502 all species →	Domain	Helicase-associated domain	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR014001 all species →	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan
IPR002464 all species →	Conserved_site	DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site	Interproscan
IPR011545 all species →	Domain	DEAD/DEAH box helicase domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR18934 all species →	ATP-DEPENDENT RNA HELICASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000398 all species →	Biological Process	mRNA splicing, via spliceosome	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0004386 all species →	Molecular Function	helicase activity	Interproscan
GO:0005622 all species →	Cellular Component	intracellular anatomical structure	Interproscan
GO:0005681 all species →	Cellular Component	spliceosomal complex	Interproscan
GO:0034458 all species →	Molecular Function	3'-5' RNA helicase activity	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for scaffold377.g9.t2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.