Gene detail

Detailed information of scaffold387.g2.t2 in Aurelia aurita

Genomic Location: scaffold387:26256...80800
NR annotation: no NCBI-NR hit recorded
Species Aurelia aurita · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

scaffold387.g2.t2

tgttaaaaattctggcttagaagtgaggggcatggtagtagtgagggtgggcttaatggagaggggggctaaatagagcttttacggtattacatttgtctctcgattgatatctatgtatgaatgtcagaatgttacccggaatgccctgtaattttttttgcatagcaagtatctcatgacagtatattagaactgtagagatatgatttgttttagaaattgacattgcaaccgacatatgtctggacatggaaaacaatcaaaccatcctgaaggcacctaaggctgaaaggaaaccgcaaaggtcctttgcgttcgatcattgtttttggtctattgatgaatcgatggcgaaatttgcagggcaagaattcgtgtacaaatgccttggcgagggagttgtcgagaatgccttcaaaggttacaatgcatgcatctttgcctatggtcaaactgggtctggtaagagttacacgatgatggggtcaccttgtgcgaagggtcttataccaaggatatgtgactggttgtttgaaaccatcgcaaagagacacgacgccgacaataatatgacatttaaagttgaagtatcttacatggaaatttataatgaaaaggtcagggatcttctatgtccaaagagcgacaaacagaatttgaaagttcgtgaacataaggttcttggtccttatgttgatggtctatcaaagctcgtggtttcatgctatcaggatattgataacctaatggtagagggcaacaaatctcgaaccgtagcagctacaatgatgaatgctgaaagtagtaggtcgcatgcagttttcaatgttgtgcttactcaaaggatatttgattctcaaacggagagtaccggagagaaggtgagcaaaatcagtttggtagatcttgctggaagtgaacgtgttgcgaaaactggggctgctggagaccgtctgaaagagggtggaaacattaacaaatctttgagtactttgggattggttatatcggcccttgcggatcagtcaagtggaaagcacaagaaaggttttgtcccatacagggattcggtattaacgtggcttctaaaggacaatctgggaggaaacagcaaaactgtcatggttgccacagtaagtcccgctgctgataattatgaagaaacactgtctacgctacggtatgcagacagagcgaaaagaatcgagaaccatgctgttgttaacgaagatcctaatgcaaagataattagagaattgcgtgaagaagtcgagcgattgagggttatgttgcaaagcaaatcgattgatcctttactttcgctatcaaagtctggaagggatagtgcagaaacagggaacataagagaagagttggctgaaaatgaaaaactaattaaagaatgtacaaaaacgtgggaagaaaaggaaaagcagactgagatgattcacaaggagcgacaccagatcctagaagagatgggaattagcgtacaagactcgggaatcggtgtaaaagaggggcgatactatctagtcaacctgaatgctgatccatcgttaaatgaactgttagtttattatttgaaggatcatacattgatcgggcgtcagaatgcaccaaaacctcaggatatacagctaagtggtcttggaattcttaaagagcactgcattgttgatatagacgaagaggttgtttatttagagccttgtggcgatggaaggacatgtgtcaatggacaacagatatcagaaaggacgcaactaaggcatggagatagaattctacttgggaataattatttcttccgactcaattgccctcattctacaagtatgatacaagacggtgacatggatcaaacagtggacttcgattttgcacaaacagagcttatgttgaacgaatttcattcccttggagaaccaatcaaagacataatcaagcaattagaacaacaccatgagaaggaaaagcaaggtgctctggaggagcaacgaaaacaatatgaagaggaaattgagagactgcgacggagcacgccagttgataccttatcggatgcacctcacagttttgatggtagactcagtctcaccacatctggttatggatcacgaatgtctgatcgagaaggatccaactacaatctgcttgaggaaagaaatcaagatgtatttgaaagggatatgtcattcgaagacagcctgcggatacttagagaagaggttctcagagcaaactcttttgttagggaagcgaatcaactgagtgaggaaatgggtaaaaaagttgaatatgctgtcacattgcagattccaacctcgagtctcagtcttggaagaaacagggcacctcttacgagtgaggttgctatcgttgtgaagcacagtaaacgggggacacaagaatggttacggcagaatacggttagtttgaacactgataaaacagaatgcatggttgttggtcacagacgacaaactaatggtatccttggaccaattgtggtaatataaataaaggaccaatcaaacgggttcaaaaag

Transcript

scaffold387.g2.t2

TGTTAAAAATTCTGGCTTAGAAGTGAGGGGCATGGTAGTAGTGAGGGTGGGCTTAATGGAGAGGGGGGCTAAATAGAGCTTTTACGGTATTACATTTGTCTCTCGATTGATATCTATGTATGAATGTCAGAATGTTACCCGGAATGCCCTGTAATTTTTTTTGCATAGCAAGTATCTCATGACAGTATATTAGAACTGTAGAGATATGATTTGTTTTAGAAATTGACATTGCAACCGACATATGTCTGGACATGGAAAACAATCAAACCATCCTGAAGGCACCTAAGGCTGAAAGGAAACCGCAAAGGTCCTTTGCGTTCGATCATTGTTTTTGGTCTATTGATGAATCGATGGCGAAATTTGCAGGGCAAGAATTCGTGTACAAATGCCTTGGCGAGGGAGTTGTCGAGAATGCCTTCAAAGGTTACAATGCATGCATCTTTGCCTATGGTCAAACTGGGTCTGGTAAGAGTTACACGATGATGGGGTCACCTTGTGCGAAGGGTCTTATACCAAGGATATGTGACTGGTTGTTTGAAACCATCGCAAAGAGACACGACGCCGACAATAATATGACATTTAAAGTTGAAGTATCTTACATGGAAATTTATAATGAAAAGGTCAGGGATCTTCTATGTCCAAAGAGCGACAAACAGAATTTGAAAGTTCGTGAACATAAGGTTCTTGGTCCTTATGTTGATGGTCTATCAAAGCTCGTGGTTTCATGCTATCAGGATATTGATAACCTAATGGTAGAGGGCAACAAATCTCGAACCGTAGCAGCTACAATGATGAATGCTGAAAGTAGTAGGTCGCATGCAGTTTTCAATGTTGTGCTTACTCAAAGGATATTTGATTCTCAAACGGAGAGTACCGGAGAGAAGGTGAGCAAAATCAGTTTGGTAGATCTTGCTGGAAGTGAACGTGTTGCGAAAACTGGGGCTGCTGGAGACCGTCTGAAAGAGGGTGGAAACATTAACAAATCTTTGAGTACTTTGGGATTGGTTATATCGGCCCTTGCGGATCAGTCAAGTGGAAAGCACAAGAAAGGTTTTGTCCCATACAGGGATTCGGTATTAACGTGGCTTCTAAAGGACAATCTGGGAGGAAACAGCAAAACTGTCATGGTTGCCACAGTAAGTCCCGCTGCTGATAATTATGAAGAAACACTGTCTACGCTACGGTATGCAGACAGAGCGAAAAGAATCGAGAACCATGCTGTTGTTAACGAAGATCCTAATGCAAAGATAATTAGAGAATTGCGTGAAGAAGTCGAGCGATTGAGGGTTATGTTGCAAAGCAAATCGATTGATCCTTTACTTTCGCTATCAAAGTCTGGAAGGGATAGTGCAGAAACAGGGAACATAAGAGAAGAGTTGGCTGAAAATGAAAAACTAATTAAAGAATGTACAAAAACGTGGGAAGAAAAGGAAAAGCAGACTGAGATGATTCACAAGGAGCGACACCAGATCCTAGAAGAGATGGGAATTAGCGTACAAGACTCGGGAATCGGTGTAAAAGAGGGGCGATACTATCTAGTCAACCTGAATGCTGATCCATCGTTAAATGAACTGTTAGTTTATTATTTGAAGGATCATACATTGATCGGGCGTCAGAATGCACCAAAACCTCAGGATATACAGCTAAGTGGTCTTGGAATTCTTAAAGAGCACTGCATTGTTGATATAGACGAAGAGGTTGTTTATTTAGAGCCTTGTGGCGATGGAAGGACATGTGTCAATGGACAACAGATATCAGAAAGGACGCAACTAAGGCATGGAGATAGAATTCTACTTGGGAATAATTATTTCTTCCGACTCAATTGCCCTCATTCTACAAGTATGATACAAGACGGTGACATGGATCAAACAGTGGACTTCGATTTTGCACAAACAGAGCTTATGTTGAACGAATTTCATTCCCTTGGAGAACCAATCAAAGACATAATCAAGCAATTAGAACAACACCATGAGAAGGAAAAGCAAGGTGCTCTGGAGGAGCAACGAAAACAATATGAAGAGGAAATTGAGAGACTGCGACGGAGCACGCCAGTTGATACCTTATCGGATGCACCTCACAGTTTTGATGGTAGACTCAGTCTCACCACATCTGGTTATGGATCACGAATGTCTGATCGAGAAGGATCCAACTACAATCTGCTTGAGGAAAGAAATCAAGATGTATTTGAAAGGGATATGTCATTCGAAGACAGCCTGCGGATACTTAGAGAAGAGGTTCTCAGAGCAAACTCTTTTGTTAGGGAAGCGAATCAACTGAGTGAGGAAATGGGTAAAAAAGTTGAATATGCTGTCACATTGCAGATTCCAACCTCGAGTCTCAGTCTTGGAAGAAACAGGGCACCTCTTACGAGTGAGGTTGCTATCGTTGTGAAGCACAGTAAACGGGGGACACAAGaatggttacggcagaatacggttagtttgaacactgataaaacagaatgcatggttgttggtcacagacgacaaactaatggtatccttggaccaattgtggtaatataaataaaggaccaatcaaacgggttcaaaaag

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00498 all species →	FHA	FHA domain	Family	Interproscan
PF16183 all species →	Kinesin_assoc	Kinesin-associated	Family	Interproscan
PF00225 all species →	Kinesin	Kinesin motor domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000253 all species →	Domain	Forkhead-associated (FHA) domain	Interproscan
IPR001752 all species →	Domain	Kinesin motor domain	Interproscan
IPR008984 all species →	Homologous_superfamily	SMAD/FHA domain superfamily	Interproscan
IPR032405 all species →	Domain	Kinesin-associated	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR019821 all species →	Conserved_site	Kinesin motor domain, conserved site	Interproscan
IPR036961 all species →	Homologous_superfamily	Kinesin motor domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47117 all species →	STAR-RELATED LIPID TRANSFER PROTEIN 9	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0003777 all species →	Molecular Function	microtubule motor activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0007018 all species →	Biological Process	microtubule-based movement	Interproscan
GO:0008017 all species →	Molecular Function	microtubule binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for scaffold387.g2.t2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.