Gene detail

Detailed information of scaffold389.g9.t2 in Aurelia aurita complex sp. Pacific

Genomic Location: scaffold389:201807...224044
NR annotation: no NCBI-NR hit recorded
Species Aurelia aurita complex sp. Pacific · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

scaffold389.g9.t2

ctgcaaacttcgaaaatggcggattggctcgagtatttttctcgctcacgtccaccatcaaatctcgaagaagctaaaagagcaatacaagattttgcatcgaaacatcggcagctggggagaaacattgttttagtgacgagtggaggcaccacagtaccattagaaagtaacactgtcagatttgttgataatttcagccaaggaacaaggggagcagcttctgctgagtactttttgcagcatggatatgcagttatatttcttcacagacagagatccctggaacccttttgcagacattttgaaagccacaatgcccttgatatgcttgaaatgcaagttgatcaacatggctcttgcagccttgcagtcgatgaatctagagccccatggcttcaggacattctcaggaagtacaaagaggctcaaagcacatgcttgctgctccaaattggatttctgacactatcagactatctgtttctccttaaagcatctgctgaggcgctgtcacctatgggacctcatgctatgttttatcttgctgcagcagtttcagatttttatatcccagaaactgatatgtctgaacataaattacagtcgaacaacggagtattgcaactaacaatgcatccaactccaaaaatgttgtcgccactcgttaaagattggtccaaggactcatttgttgtctctttcaagttggaaacagatgttaacataatatcacgaaaagcaagggaagcgctacaaaagtatcatcaccaggttgtgatagctaacattctacaaacgagacgcaaaactgttgtgttagtgacaccgtatgacgaatatcccatatggatggcagagaacgaactggaggctggcaaagaaatcgaagaaaaaattgtagaggagctagcgagaagacatatgcagtttattgcagaaaatcaggattccacgcaaggccaaggtggatcaagccctcccgaggaagcagttggggaaaacgcattgtcggctgctttgcaatttcagactcaagtccctgataaccaagaccagaatcaagaaattggtggtcctggtggcaaccaagtgctaggtaatggcgggattggtaatcagttggttgggcaagcgaaaagtctttattttcaaatgaaattcaattctgatggcacaacagtaacacaagccattccaaatccatctcctaacttacgtcgatcgttttcaagcaaagaggatcatggacttaccgatgaaatgcaagagtttatcagagctttcaaaagtaaacgcatgtccctcggttacactcaggaagatattgggagagaattgtcagaaatgaatgggcctacctacagccaatcctttatatccagtgctcttgaagtagagagagcagcaaaatcactcaaaagaaacaaaagtcctgggtgtgatgatataaaagcagagctaatcaaatatgggccaaagaaaatatatgaaggcatagcagaacttctgaataatattgcaaaaagcggaaaattcccaaaagaaattaaaaaaggcatcttaatacctttgcctaagccaggaaagaaacctggaccaacagggcacctaagaccaatcatattactttccactctgagaaagatacttgcaatatgcatacttaggagaacatcagaacatttccaagaaaagattccactaagtcaggcagcatacaaagaaggaagaagcacaacagagatggtatttagtttcaaaacactagcagaaaaagcaatcacatctaaaacatacactacacatctattgctcttagatnggagcaaagaaattaagaggagaagattaagctggctaggacatttgctcagactgccagagaaaacaccagccaaacaagccctatatgaagcactaagacctgtgaagaaacccaaaggcaaaccaaaactcacttggttaggcctcatcgacaaagatctaggaggacaaggcctgaatgtaaaagacacaaacaaattaaagaaactagcaaataatagaaacacttggagtggaattatcaggctcgcaatgtcagggactgacgtaacagcgttcgaaggaaagcaactgggaatgaaagctgctgagcggatgaggccaattttagaggcatttttgcagcagaaggaagacgagggttcgaagaatatgaaatttggcaagaagagaaggcgacggacttgcttcactcatgaagcacaaaaactactaaacgaccattttcttaaaaacccgaagccaactcctgatgacattcaaatgatcgcaaatgaactaggtttcgatttgagcacagtcaaagtatggttttgcaaccgaaaacagaaccttaaaagacaaggccagccaattcctgacaattctcttaaaagtgaactagaagcgaggcggaaacagccagacgggaacgagactgtggaagcacatttccagaatgcattgacagtgccagcgagccaagtgaagcacattttatcagcgtcaccaccaacaggaaatgtcactaatttgccatttattttgagccaagatggtaatgtcactattgtcacatcgccaaattcgttacagggagcacatatcttgccacagtttattgcatccagttcgtcgcaacagttagtcctttcacaagtgccattcgtgcaaacagtctctgctatgaaccagggcatgtctggagtggttactgttccaaccgtgcagcccgttcaagtgctggcagcaagacagattcccgctcaagttttataccagggtgctcaagtaaacacagtatcagttacagacgaaggacagcgtgtcgtcgcgcacaccgttacatcttcacgcaaatcagaagcagaagctgccttattggctggtcagttttcacatgcggtcacaagaacaaacgaactatccggagtcagtcccgcaatgataacacgaaccataacgaacgaaataggaggtagtattactgatcagacaatggaagaacaactgcattcacaagcaggagggcaaatccgacgccaacctgtcgaggtgatagctatcgacgacaacatggatgatcctagagatatgacacggttaaagtctcctgatgttgcaaagaagctgcgtaccatgacatcttagttgcctattcgtgctgcgttggacagcttatgtgtcatgttgctggagatatgggctaaagggtcctgacattgcagaggaactgcaaccatgacatcttagttgacatcttatttgtattgcgttgaccagataatgggccatgttgcttgagatatgatccggttaaaggcttttgatgttgcaaagaagctgtggacgattacaactggctgctctgctggttgttttagctaactcttaagatggaaatttgaaaaaatgaagtgacaaggacctctatttgtataatgataggttccattgctgttgattgacacttatcattaaaaagagacagatactaatgttatgaaatctgaacttaatggatggaggtcctttgtcatgtgcacagaagttatgaaatgttgtgaaaaacctgagaactaagacaagcttgttataaatttgtgctgtgttaatgtccttcacatagactatacctcagataagtttccttacgttgatgtggacgttttgaaaagtttggtaggatgacaccttgagtttaaactgtaggttacatatcatagtcatttgcgaaagggttgatttatagtagagggttgattctgtaaatagtgtgccgttgtgtagttttttttacttcgatgaggatgttagcaaatagattactgcattgtttataagcagtccacaacagacctttttacttgctaggaaagaggtttggatcgagcgtccaaatctggtaaaattttaaagcaaaagcacaacccccgttctcagtacaacactgcgaactgtggcaataagttccttcggatcctagaacacttttcagagggtttattatcgactactttatgcaaagtgagttagcaatggttcagtttacagacaggcaagtttttttgttttttttttttattgtttctcgtaattttcattcattgctagctgacatttctttcaattgaataacagcggttgaaaacaacaaacttcaatttgcaaactcgcaaaatgaaactcttgcatgctggcacttttaaactgcaactgttacacaacaaagccagctaataatgaatggaaactacgagaaacaaggccagaaggcaaatagaattctgtatataacctgaatcattcctaactcgctttgagtaaagttattgttgattaactctctgaaaaatgttctgagatccgaaggaacttgttgccacagctagcaatgtttgtagttagaaagaaggtcatgctttctttttccttggcaaaatttaccagatatggacgctcgatccaaacctcttttctggcaagtaaaaaagtttattggagcatgtgactccaagtgcatgtggctgttttttctggttgattgaagtagcagaggtgtgttagaagatggtataatataccggttaagtcagaaagagagttaacacatacatttcaaaacacgaagcttttttttatacatatgaaatattacaataaatattacattctactataccttcctaataccgcacaacactacatacagggacgatgccgaaggaagcgaaggtcgatgactaccccatggacaatagaaaagagacgcaacg

Transcript

scaffold389.g9.t2

CTGCAAACTTCGAAAATGGCGGATTGGCTCGAGTATTTTTCTCGCTCACGTCCACCATCAAATCTCGAAGAAGCTAAAAGAGCAATACAAGATTTTGCATCGAAACATCGGCAGCTGGGGAGAAACATTGTTTTAGTGACGAGTGGAGGCACCACAGTACCATTAGAAAGTAACACTGTCAGATTTGTTGATAATTTCAGCCAAGGAACAAGGGGAGCAGCTTCTGCTGAGTACTTTTTGCAGCATGGATATGCAGTTATATTTCTTCACAGACAGAGATCCCTGGAACCCTTTTGCAGACATTTTGAAAGCCACAATGCCCTTGATATGCTTGAAATGCAAGTTGATCAACATGGCTCTTGCAGCCTTGCAGTCGATGAATCTAGAGCCCCATGGCTTCAGGACATTCTCAGGAAGTACAAAGAGGCTCAAAGCACATGCTTGCTGCTCCAAATTGGATTTCTGACACTATCAGACTATCTGTTTCTCCTTAAAGCATCTGCTGAGGCGCTGTCACCTATGGGACCTCATGCTATGTTTTATCTTGCTGCAGCAGTTTCAGATTTTTATATCCCAGAAACTGATATGTCTGAACATAAATTACAGTCGAACAACGGAGTATTGCAACTAACAATGCATCCAACTCCAAAAATGTTGTCGCCACTCGTTAAAGATTGGTCCAAGGACTCATTTGTTGTCTCTTTCAAGTTGGAAACAGATGTTAACATAATATCACGAAAAGCAAGGGAAGCGCTACAAAAGTATCATCACCAGGTTGTGATAGCTAACATTCTACAAACGAGACGCAAAACTGTTGTGTTAGTGACACCGTATGACGAATATCCCATATGGATGGCAGAGAACGAACTGGAGGCTGGCAAAGAAATCGAAGAAAAAATTGTAGAGGAGCTAGCGAGAAGACATATGCAGTTTATTGCAGAAAATCAGGATTCCACGCAAGGCCAAGGTGGATCAAGCCCTCCCGAGGAAGCAGTTGGGGAAAACGCATTGTCGGCTGCTTTGCAATTTCAGACTCAAGTCCCTGATAACCAAGACCAGAATCAAGAAATTGGTGGTCCTGGTGGCAACCAAGTGCTAGGTAATGGCGGGATTGGTAATCAGTTGGTTGGGCAAGCGAAAAGTCTTTATTTTCAAATGAAATTCAATTCTGATGGCACAACAGTAACACAAGCCATTCCAAATCCATCTCCTAACTTACGTCGATCGTTTTCAAGCAAAGAGGATCATGGACTTACCGATGAAATGCAAGAGTTTATCAGAGCTTTCAAAAGTAAACGCATGTCCCTCGGTTACACTCAGGAAGATATTGGGAGAGAATTGTCAGAAATGAATGGGCCTACCTACAGCCAATCCTTTATATCCAGTGCTCTTGAAGTAGAGAGAGCAGCAAAATCACTCAAAAGAAACAAAAGTCCTGGGTGTGATGATATAAAAGCAGAGCTAATCAAATATGGGCCAAAGAAAATATATGAAGGCATAGCAGAACTTCTGAATAATATTGCAAAAAGCGGAAAATTCCCAAAAGAAATTAAAAAAGGCATCTTAATACCTTTGCCTAAGCCAGGAAAGAAACCTGGACCAACAGGGCACCTAAGACCAATCATATTACTTTCCACTCTGAGAAAGATACTTGCAATATGCATACTTAGGAGAACATCAGAACATTTCCAAGAAAAGATTCCACTAAGTCAGGCAGCATACAAAGAAGGAAGAAGCACAACAGAGATGGTATTTAGTTTCAAAACACTAGCAGAAAAAGCAATCACATCTAAAACATACACTACACATCTATTGCTCTTAGATNggagcaaagaaattaagaggagaagattaagctggctaggacatttgctcagactgccagagaaaacaccagccaaacaagccctatatgaagcactaagacctgtgaagaaacccaaaggcaaaccaaaactcacttggttaggcctcatcgacaaagatctaggaggacaaggcctgaatgtaaaagacacaaacaaattaaagaaactagcaaataatagaaacacttggagtggaattatcaggctcgcaatgtcagggactgacgtaacagcGTTCGAAGGAAAGCAACTGGGAATGAAAGCTGCTGAGCGGATGAGGCCAATTTTAGAGGCATTTTTGCAGCAGAAGGAAGACGAGGGTTCGAAGAATATGAAATTTGGCAAGAAGAGAAGGCGACGGACTTGCTTCACTCATGAAGCACAAAAACTACTAAACGACCATTTTCTTAAAAACCCGAAGCCAACTCCTGATGACATTCAAATGATCGCAAATGAACTAGGTTTCGATTTGAGCACAGTCAAAGTATGGTTTTGCAACCGAAAACAGAACCTTAAAAGACAAGGCCAGCCAATTCCTGACAATTCTCTTAAAAGTGAACTAGAAGCGAGGCGGAAACAGCCAGACGGGAACGAGACTGTGGAAGCACATTTCCAGAATGCATTGACAGTGCCAGCGAGCCAAGTGAAGCACATTTTATCAGCGTCACCACCAACAGGAAATGTCACTAATTTGCCATTTATTTTGAGCCAAGATGGTAATGTCACTATTGTCACATCGCCAAATTCGTTACAGGGAGCACATATCTTGCCACAGTTTATTGCATCCAGTTCGTCGCAACAGTTAGTCCTTTCACAAGTGCCATTCGTGCAAACAGTCTCTGCTATGAACCAGGGCATGTCTGGAGTGGTTACTGTTCCAACCGTGCAGCCCGTTCAAGTGCTGGCAGCAAGACAGATTCCCGCTCAAGTTTTATACCAGGGTGCTCAAGTAAACACAGTATCAGTTACAGACGAAGGACAGCGTGTCGTCGCGCACACCGTTACATCTTCACGCAAATCAGAAGCAGAAGCTGCCTTATTGGCTGGTCAGTTTTCACATGCGGTCACAAGAACAAACGAACTATCCGGAGTCAGTCCCGCAATGATAACACGAACCATAACGAACGAAATAGGAGGTAGTATTACTGATCAGACAATGGAAGAACAACTGCATTCACAAGCAGGAGGGCAAATCCGACGCCAACCTGTCGAGGTGATAGCTATCGACGACAACATGGATGATCCTAGAGATATGACACGGTTAAAGTCTCCTGATGTTGCAAAGAAGCTGCGTACCATGACATCTTAGTTGCCTATTCGTGCTGCGTTGGACAGCTTATGTGTCATGTTGCTGGAGATATGGGCTAAAGGGTCCTGACATTGCAGAGGAACTGCAACCATGACATCTTAGTTGACATCTTATTTGTATTGCGTTGACCAGATAATGGGCCATGTTGCTTGAGATATGATCCGGTTAAAGGCTTTTGATGTTGCAAAGAAGCTGTGGACGATTACAACTGGCTGCTCTGCTGGTTGTTTTAGCTAACTCTTAAGATGGAAATTTGAAAAAATGAAGTGACAAGGACCTCTATTTGTATAATGATAGGTTCCATTGCTGTTGATTGACACTTATCATTAAAAAGAGACAGATACTAATGTTATGAAATCTGAACTTAATGGATGGAGGTCCTTTGTCATGTGCACAGAAGTTATGAAATGTTGTGAAAAACCTGAGAACTAAGACAAGCTTGTTATAAATTTGTGCTGTGTTAATGTCCTTCACATAGACTATACCTCAGATAAGTTTCCTTACGTTGATGTGGACGTTTTGAAAAGTTTGGTAGGATGACACCTTGAGTTTAAACTGTAGGTTACATATCATAGTCATTTGCGAAAGGGTTGATTTATAGTAGAGGGTTGATTCTGTAAATAGTGTGCCGTTGTGTAGTTTTTTTTACTTCGATGAGGATGTTAGCAAATAGATTACTGCATTGTTTATAAGCAGTCCACaacagacctttttacttgctaggaaagaggtttggatcgagcgtccaaatctggtaaaattttaaagcaaaagcacaacccccgttctcagtacaacactgcgaactgtggcaataagttccttcggatcctagaacacttttcagagggtttattatcgactactttatgcaaagtgagttagcaatggttcagtttacagacaggcaagtttttttgttttttttttttattgtttctcgtaattttcattcattgctagctgacatttctttcaattgaataacagcggttgaaaacaacaaacttcaatttgcaaactcgcaaaatgaaactcttgcatgctggcacttttaaactgcaactgttacacaacaaagccagctaataatgaatggaaactacgagaaacaaggccagaaggcaaatagaattctgtatataacctgaatcattcctaactcgctttgagtaaagttattgttgattaactctctgaaaaatgttctgagatccgaaggaacttgttgccacagctagcaatgtttgtagttagaaagaaggtcatgctttctttttccttggcaaaatttaccagatatggacgctcgatccaaacctcttttctggcaagtaaaaaagtttattGGAGCATGTGACTCCAAGTGCATGTGGCTGTTTTTTCTGGTTGATTGAAGTAGCAGAGGTGTGTTAGAAGATGGTATAATATACCGGTTAAGTCAGAAAGAGAGTTAACACATACATTTCAAAACACGAAGCttttttttatacatatgaaatattacaataaatattacattctactataccttcctaataccgcacaacactacatacagggacgatgccgaaggaagcgaaggtcgatgactaccccatggacaatagaaaagagacgcaacg

Protein

Gene family

Family type	Membership / link
Transcription factor family	Pou · all TF in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04127 all species →	DFP	DNA / pantothenate metabolism flavoprotein	Family	Interproscan
PF00157 all species →	Pou	Pou domain - N-terminal to homeobox domain	Domain	Interproscan
PF00046 all species →	Homeodomain	Homeodomain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001356 all species →	Domain	Homeobox domain	Interproscan
IPR009057 all species →	Homologous_superfamily	Homeobox-like domain superfamily	Interproscan
IPR007085 all species →	Domain	DNA/pantothenate metabolism flavoprotein, C-terminal	Interproscan
IPR010982 all species →	Homologous_superfamily	Lambda repressor-like, DNA-binding domain superfamily	Interproscan
IPR000327 all species →	Domain	POU-specific domain	Interproscan
IPR050255 all species →	Family	POU domain transcription factor	Interproscan
IPR035929 all species →	Homologous_superfamily	CoaB-like superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11636 all species →	POU DOMAIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0003700 all species →	Molecular Function	DNA-binding transcription factor activity	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0000978 all species →	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981 all species →	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for scaffold389.g9.t2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.