Gene detail

Detailed information of scaffold3902.g2.t1 in Aurelia aurita complex sp. Pacific

Genomic Location: scaffold3902:5036...9666
NR annotation: no NCBI-NR hit recorded
Species Aurelia aurita complex sp. Pacific · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

scaffold3902.g2.t1

gaacgagtggcaagtacccgaagcaaacacgcatggcgccaaggacggcgaattggtcgaggcagagcttgccggaccaaaggcccgcatgggtttgcccaaagcgcgcatcgtcgaacggctcggcgatccgtccgcccccaaggcggtgtcgctgattgcaatccaccagcatggcattcccgatcacttccccgatgcggttgttgccgaggctgacagcgccaaaccaatgggcctcaaggggcgcgaagatctgcgcgacctgccgctgattaccatcgaccctgccgatgcccgcgaccacgacgacgcctgctttgcccacgcggatgaagatcccaagaaccccggtggccatgtgatctgggtcgcgatcgccgatgtcgcagcctatgtgacgcccggttcggcactggaccgcgaagcacgcaaacgcggtaactccagctacttccctgatcgggtcgtaccgatgttgccggaccggctttcaggcgatctctgctctctgcacgagggggtgccacgtccctgtctggcggtgcgcatgcagatcgacgccgagggcaacaagatcgcgcaccgctttgtgcgcggcctgatgaaatcgcaggcctccttgcactacggcgaggtgcaagacgccgtggatggtcgcgtcaccgcgcgcacggaaccgttcctggaagacgtcataaaaccactctatgccgcctatgaagcgctcaaagccgcccgtggcgcgcgccagccgctggatctcgacctgccagagcgcaagatcgtgctcgacgacaagggcaaggtggcctcggtcaatttccgtgatcgcctcgatgcgcaccggctgatcgaagaattcatggtgctggccaatgtggccgccgccgaaaccctgatcaagaagcgccagccgctgttgttccgggtgcatgaagaacccgctcaggacaaactggacgcgctgcgcgacacggcgcaggcggcgggtctgaaccttgctaaaggacaagtgctgcaaacgcggcacctgaacgcattgctgaatgccgccgcgggaactgatgatgcggagttgatcaacatctccaccctgcggtcgatgcagcaggcctattactacccggagaacttcggccattttggtctcgcgctgcgcaactatgcgcattttacttcaccgatccgtcgctatgccgacctgattgtgcaccgcgcgttgataacggcccatgggtggggcaaagacgggctttcggctgatgaggtcgaacgactggaagacactgcgacgcatatctccgcaaccgagcggcgctcgatgctggcggagcgcgacaccacggaccgctatcttgcatcctatctggcggaacgcgtgggcaatgaattcaccggtcgaatctccggcatcgctcgctttggcgcatttgtgaaactggatgaaaccggggccgacggattggtgccagtgcgctcaatcggacgggagtatttccacttcgatgcgcaggctggcacattgatggggtctgacaccggattgatcatcgccatcggccaacgggtgacggtccgcctgacccaggctgcaccggtgaccggcgggttggagctggaactgctggcccttgaagatgcggaactgccaaaagggcgcggcgatgccggcaaaggcggccgccgtcgtagcccagcgggccgcaccgtgtctcgcagcaaggccgcaaaatcaaagcacaaggcggccaagcttgcctcggcaaccacgttgcgacctgtcgcccgtacgaatgtggcgacggctgccgagaaggcgcttgcgactgcgggtgaaaccagtggtagcgcaggctttccggcgtggatcaaggagttccaagtgcgcgcgcaagcgcagggcatcagcgcatcgacactccggcgcgcgtttgaaggggtgacgtatgatccctctgtcgtcaagcgcgatcgtaaccagtctgaattcagcaagacaatctgggaatacctcgacagtgcggcctcggacagccggatcagcaatggcagtaaggcgctgcgtacccatctagccaagttacaacagatcgagaaacactatggtgtcgacaaggagatcgtagttgcggtctggggactagaaagcagttacggcactttccgaggggacatggatatcatccgctcgttggcaacgctggcttatgacgggcggcgcggttctttctttgagcaacaactgatcgccgcgctaaaaatcctgcaggcgggggatgtagacccacgatccatgaccggcagttgggcgggagcgatggggcacacgcaatttatgcccacatcctacctcgactatgcggtggatttcaccggtgacggcaaacgtgacatctggtcggacacgcccaccgacgcactggcctccaccgctgcttatctgaaaaaattcggatgggtcacaggccaaccatggggcgtcgaagtcgttttgccgcgcgattttgattttacactcgccaatcgcaaaatcaaaaagagcccggctgactgggcaaaactcggcgtacgcgcgatgaatgggcagcccgtggcaaatcacggcgacgcgtcaatcctgctgcctgcaggtggcaagggcgcagccttcatgattttcaagaacttctcggtgatcgagcgatacaacacggcggatgcctatgtcattggtgtcggtcacttgagtgatcggctgaaaggtggcgagaagataaaaggcagctggccacgcggcgaccgggcgctaacgttctcggagcgtaaagagttgcaacaacgtctgacgcgcgccggatttagcacggatggcgttgatggccgcataggccccaatacagtggccgccgtgcgcgcctatcagagcgcaaagggactgatgccagatggttatgcctcgctgaccctgttggaaaagctccggtaacaccccaatctggcgcgatacgaaaaagccccgctcgatggcggggcttctttcttgtcgtgaggtcggtcagctcgggctcatgccgcgcagtcgctcactgcgtcgccgcagcatttccactgtcgtcagcaggcagatcgagatcgcaaccagaatagtcgccactgcaaggattgtaggagagatttgttcgcgcagaccagtaaacatctgccatggca

Transcript

scaffold3902.g2.t1

GAACGAGTGGCAAGTACCCGAAGCAAACACGCATGGCGCCAAGGACGGCGAATTGGTCGAGGCAGAGCTTGCCGGACCAAAGGCCCGCATGGGTTTGCCCAAAGCGCGCATCGTCGAACGGCTCGGCGATCCGTCCGCCCCCAAGGCGGTGTCGCTGATTGCAATCCACCAGCATGGCATTCCCGATCACTTCCCCGATGCGGTTGTTGCCGAGGCTGACAGCGCCAAACCAATGGGCCTCAAGGGGCGCGAAGATCTGCGCGACCTGCCGCTGATTACCATCGACCCTGCCGATGCCCGCGACCACGACGACGCCTGCTTTGCCCACGCGGATGAAGATCCCAAGAACCCCGGTGGCCATGTGATCTGGGTCGCGATCGCCGATGTCGCAGCCTATGTGACGCCCGGTTCGGCACTGGACCGCGAAGCACGCAAACGCGGTAACTCCAGCTACTTCCCTGATCGGGTCGTACCGATGTTGCCGGACCGGCTTTCAGGCGATCTCTGCTCTCTGCACGAGGGGGTGCCACGTCCCTGTCTGGCGGTGCGCATGCAGATCGACGCCGAGGGCAACAAGATCGCGCACCGCTTTGTGCGCGGCCTGATGAAATCGCAGGCCTCCTTGCACTACGGCGAGGTGCAAGACGCCGTGGATGGTCGCGTCACCGCGCGCACGGAACCGTTCCTGGAAGACGTCATAAAACCACTCTATGCCGCCTATGAAGCGCTCAAAGCCGCCCGTGGCGCGCGCCAGCCGCTGGATCTCGACCTGCCAGAGCGCAAGATCGTGCTCGACGACAAGGGCAAGGTGGCCTCGGTCAATTTCCGTGATCGCCTCGATGCGCACCGGCTGATCGAAGAATTCATGGTGCTGGCCAATGTGGCCGCCGCCGAAACCCTGATCAAGAAGCGCCAGCCGCTGTTGTTCCGGGTGCATGAAGAACCCGCTCAGGACAAACTGGACGCGCTGCGCGACACGGCGCAGGCGGCGGGTCTGAACCTTGCTAAAGGACAAGTGCTGCAAACGCGGCACCTGAACGCATTGCTGAATGCCGCCGCGGGAACTGATGATGCGGAGTTGATCAACATCTCCACCCTGCGGTCGATGCAGCAGGCCTATTACTACCCGGAGAACTTCGGCCATTTTGGTCTCGCGCTGCGCAACTATGCGCATTTTACTTCACCGATCCGTCGCTATGCCGACCTGATTGTGCACCGCGCGTTGATAACGGCCCATGGGTGGGGCAAAGACGGGCTTTCGGCTGATGAGGTCGAACGACTGGAAGACACTGCGACGCATATCTCCGCAACCGAGCGGCGCTCGATGCTGGCGGAGCGCGACACCACGGACCGCTATCTTGCATCCTATCTGGCGGAACGCGTGGGCAATGAATTCACCGGTCGAATCTCCGGCATCGCTCGCTTTGGCGCATTTGTGAAACTGGATGAAACCGGGGCCGACGGATTGGTGCCAGTGCGCTCAATCGGACGGGAGTATTTCCACTTCGATGCGCAGGCTGGCACATTGATGGGGTCTGACACCGGATTGATCATCGCCATCGGCCAACGGGTGACGGTCCGCCTGACCCAGGCTGCACCGGTGACCGGCGGGTTGGAGCTGGAACTGCTGGCCCTTGAAGATGCGGAACTGCCAAAAGGGCGCGGCGATGCCGGCAAAGGCGGCCGCCGTCGTAGCCCAGCGGGCCGCACCGTGTCTCGCAGCAAGGCCGCAAAATCAAAGCACAAGGCGGCCAAGCTTGCCTCGGCAACCACGTTGCGACCTGTCGCCCGTACGAATGTGGCGACGGCTGCCGAGAAGGCGCTTGCGACTGCGGGTGAAACCAGTGGTAGCGCAGGCTTTCCGGCGTGGATCAAGGAGTTCCAAGTGCGCGCGCAAGCGCAGGGCATCAGCGCATCGACACTCCGGCGCGCGTTTGAAGGGGTGACGTATGATCCCTCTGTCGTCAAGCGCGATCGTAACCAGTCTGAATTCAGCAAGACAATCTGGGAATACCTCGACAGTGCGGCCTCGGACAGCCGGATCAGCAATGGCAGTAAGGCGCTGCGTACCCATCTAGCCAAGTTACAACAGATCGAGAAACACTATGGTGTCGACAAGGAGATCGTAGTTGCGGTCTGGGGACTAGAAAGCAGTTACGGCACTTTCCGAGGGGACATGGATATCATCCGCTCGTTGGCAACGCTGGCTTATGACGGGCGGCGCGGTTCTTTCTTTGAGCAACAACTGATCGCCGCGCTAAAAATCCTGCAGGCGGGGGATGTAGACCCACGATCCATGACCGGCAGTTGGGCGGGAGCGATGGGGCACACGCAATTTATGCCCACATCCTACCTCGACTATGCGGTGGATTTCACCGGTGACGGCAAACGTGACATCTGGTCGGACACGCCCACCGACGCACTGGCCTCCACCGCTGCTTATCTGAAAAAATTCGGATGGGTCACAGGCCAACCATGGGGCGTCGAAGTCGTTTTGCCGCGCGATTTTGATTTTACACTCGCCAATCGCAAAATCAAAAAGAGCCCGGCTGACTGGGCAAAACTCGGCGTACGCGCGATGAATGGGCAGCCCGTGGCAAATCACGGCGACGCGTCAATCCTGCTGCCTGCAGGTGGCAAGGGCGCAGCCTTCATGATTTTCAAGAACTTCTCGGTGATCGAGCGATACAACACGGCGGATGCCTATGTCATTGGTGTCGGTCACTTGAGTGATCGGCTGAAAGGTGGCGAGAAGATAAAAGGCAGCTGGCCACGCGGCGACCGGGCGCTAACGTTCTCGGAGCGTAAAGAGTTGCAACAACGTCTGACGCGCGCCGGATTTAGCACGGATGGCGTTGATGGCCGCATAGGCCCCAATACAGTGGCCGCCGTGCGCGCCTATCAGAGCGCAAAGGGACTGATGCCAGATGGTTATGCCTCGCTGACCCTGTTGGAAAAGCTCCGGTAACACCCCAATCTGGCGCGATACGAAAAAGCCCCGCTCGATGGCGGGGCTTCTTTCTTGTCGTGAGGTCGGTCAGCTCGGGCTCATGCCGCGCAGTCGCTCACTGCGTCGCCGCAGCATTTCCACTGTCGTCAGCAGGCAGATCGAGATCGCAACCAGAATAGTCGCCACTGCAAGGATTGTAGGAGAGATTTGTTCGCGCAGACCAGTAAACATCTGCCATGGCA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01471 all species →	PG_binding_1	Putative peptidoglycan binding domain	Domain	Interproscan
PF00575 all species →	S1	S1 RNA binding domain	Domain	Interproscan
PF13406 all species →	SLT_2	Transglycosylase SLT domain	Domain	Interproscan
PF00773 all species →	RNB	RNB domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036366 all species →	Homologous_superfamily	PGBD superfamily	Interproscan
IPR011970 all species →	Domain	Lytic murein transglycosylase	Interproscan
IPR002477 all species →	Domain	Peptidoglycan binding-like	Interproscan
IPR036365 all species →	Homologous_superfamily	PGBD-like superfamily	Interproscan
IPR012340 all species →	Homologous_superfamily	Nucleic acid-binding, OB-fold	Interproscan
IPR003029 all species →	Domain	S1 domain	Interproscan
IPR043426 all species →	Family	Membrane-bound lytic murein transglycosylase B-like	Interproscan
IPR004476 all species →	Family	Ribonuclease II/ribonuclease R	Interproscan
IPR011805 all species →	Family	Ribonuclease R	Interproscan
IPR031304 all species →	Domain	Transglycosylase SLT domain 2	Interproscan
IPR023346 all species →	Homologous_superfamily	Lysozyme-like domain superfamily	Interproscan
IPR022966 all species →	Conserved_site	Ribonuclease II/R, conserved site	Interproscan
IPR001900 all species →	Domain	Ribonuclease II/R	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR30163 all species →	MEMBRANE-BOUND LYTIC MUREIN TRANSGLYCOSYLASE B	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0008933 all species →	Molecular Function	lytic transglycosylase activity	Interproscan
GO:0009253 all species →	Biological Process	peptidoglycan catabolic process	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0004540 all species →	Molecular Function	RNA nuclease activity	Interproscan
GO:0016070 all species →	Biological Process	RNA metabolic process	Interproscan
GO:0004518 all species →	Molecular Function	nuclease activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for scaffold3902.g2.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.