Gene detail

Detailed information of scaffold392.g5.t1 in Morbakka virulenta

Genomic Location: scaffold392:296766...418271
NR annotation: XP_037794114.1, uncharacterized protein LOC119589587 [Penaeus monodon]

Gene Structure

More details in Jbrowse

Sequence

CDS

scaffold392.g5.t1

CTGCAGATTTTGAAAATAAACTCAATAGACTTTGACCTTAGAAATTATGTAGCTCTTAACCCTGCAGACATTGAACTTCGACAGTATGTAGATTTTAACCCTGCAGACATTGAACTTCGACAGTATGTAGATTTTAACCCTGCAGACTTTGAACTTCGACAGTATGTAGATTTTAACCCTGCAGACATTGAACTTCGACAGTATGTAGATTTTAACCCTGCAGACATTGAACTTCGACAgttggcccagtcgaagtgggatggtggtgttagtcctttgtgtcgcatctgcggaatggaatctgagtcagtttggcatgttgcgtgtgggtgtaaggtactgactcagaaggagtacaagaggcggcatgataggatgggattgagaatatattgggagctgtgcaagaagtatgggttgaaatgtgcggggaaatggtttgaagaggtgcctgacaaagttagaaagagtgaagatggaaggtttgaagtttggtgggatagatcagtggagacaatgcaacaggtggaatctaatcgtccggatgttgttgttgttgaccgcactaagaagagatggctggttgtagattttgctgtgccttccgatcgaaatnagtatgggttgaaatgtgcggggaaatggtttgaagaggtgcctgacaaagttagaaagagtgaagatggaagctttttcagggatttttttctctggtgggaaattaacagtgactggtggctctatgaagtagtggatgaaagcaagaagaaaggactcgaaataaatcgcaaaaagacggtgtgtatggtagtaagcaagaaacacagtccaagatgcagattactcattgggactgacaaaattcagcaggtggaaaagtttaattacttgggaagctacatcacccagaatggtaaatgtgacgttgaaataaagcggagaattggattagcaaaggatgccttcaatcgactaggaaaaattttaaaacaccagaaaatgtcaatgtccacaagaatgagagtactgcagtgctacgtaacatctaccctgctgtatggaagtgaatgctggacaatatcagtcggaatggaaaagaagttggaagccgctgaaatgtggttcttgaggaggatgttgagaatatcatggactgatcatgtagcaaacgatgacgttttacaaagagcaggaacagaaaagaacctgttgaggacagtccgaagaaggcagatagaattcttgggacacgtcatgaggaaggagggtctggaaaacttggtactgactggagTATCAAGCGAAAATAATGAAAATCTGGGATTTGACGAATCACCCATCATAAGAATAGACTGGGCAGTAATCAATGCTCAAAAAGGAAAGATAGTAGAGCAACGTACCTTTTTGGTACCAAGAACAGAGGAAAACGGTTTCTCAAATCACGAAAATGAGCCTGATGATACTACTGACACACTGTTGGACTCAAAACATGAAGAATTGCACACTACTATTCATCAGATTGAGGATTCGCTTTCGTTATTTGATGTAGATGAACTGAGAGTTCAGTTCATTACGGACGGCCCCCTTCATCTACGACAATGTTTACACCCAAGGGCCACAAAACAATGCATACAATTGTCAAAAAATTTTTATGAATACTTCGACTTACGAAAAGAATATAAGAAATACAGTGGCAAATCAGGAAATAAAACTGCTTATGATATAGCTGCTGAGCTACATATAGATATCAAAAGACCAATTGATGATCCAGGAGACTATTGTCGATTATGTGCCAAGATTGTTCAACACTTAGTTCGAAATGGACATCATTTTGAGGAACCAGAAATCATAATGAGCAGGCTAGAACCTGGAATGAGCGTTGGATTTGTTAGGGATGAAACTATTGTGAGAACTAGAGGTTTACCTTGGCAGGTATCAGATCATGACGTTGCAAACTTTTTTAAAGGACTCAACATTGTCAAGGGTGGAGTGGCATTATGTTTGAACTTCAGGGGAAGACGAAATGGAGAAGCTCTACTACGCTTTGAAAAAGCTGAACACAGAGAATTAGCATTAAAAAGGCACAAGCATCACTTGTCTGGGAGATACATTGAGCTTGATTATTTAGACGACCAACGAGTTGCTCTGTTTTCGGCAAGAAATCTTGATGAAAAAGCGCTGAATATGCAACACGATAGAGTTCACCCACCATAG

Transcript

scaffold392.g5.t1

TACTATTTACCTTTCGACCCTTTAGAGAATAAGGTAGTATGTAGTTTTAAACCATGCAGACTATACACTCAGCGAGTTTGAATAATGAAGTATGTAGTTTTCAGTCCTGCAGATTTTGAAAATAAACTCAATAGACTTTGACCTTAGAAATTATGTAGCTCTTAACCCTGCAGACATTGAACTTCGACAGTATGTAGATTTTAACCCTGCAGACATTGAACTTCGACAGTATGTAGATTTTAACCCTGCAGACTTTGAACTTCGACAGTATGTAGATTTTAACCCTGCAGACATTGAACTTCGACAGTATGTAGATTTTAACCCTGCAGACATTGAACTTCGACAgttggcccagtcgaagtgggatggtggtgttagtcctttgtgtcgcatctgcggaatggaatctgagtcagtttggcatgttgcgtgtgggtgtaaggtactgactcagaaggagtacaagaggcggcatgataggatgggattgagaatatattgggagctgtgcaagaagtatgggttgaaatgtgcggggaaatggtttgaagaggtgcctgacaaagttagaaagagtgaagatggaaggtttgaagtttggtgggatagatcagtggagacaatgcaacaggtggaatctaatcgtccggatgttgttgttgttgaccgcactaagaagagatggctggttgtagattttgctgtgccttccgatcgaaatnagtatgggttgaaatgtgcggggaaatggtttgaagaggtgcctgacaaagttagaaagagtgaagatggaagctttttcagggatttttttctctggtgggaaattaacagtgactggtggctctatgaagtagtggatgaaagcaagaagaaaggactcgaaataaatcgcaaaaagacggtgtgtatggtagtaagcaagaaacacagtccaagatgcagattactcattgggactgacaaaattcagcaggtggaaaagtttaattacttgggaagctacatcacccagaatggtaaatgtgacgttgaaataaagcggagaattggattagcaaaggatgccttcaatcgactaggaaaaattttaaaacaccagaaaatgtcaatgtccacaagaatgagagtactgcagtgctacgtaacatctaccctgctgtatggaagtgaatgctggacaatatcagtcggaatggaaaagaagttggaagccgctgaaatgtggttcttgaggaggatgttgagaatatcatggactgatcatgtagcaaacgatgacgttttacaaagagcaggaacagaaaagaacctgttgaggacagtccgaagaaggcagatagaattcttgggacacgtcatgaggaaggagggtctggaaaacttggtactgactggagTATCAAGCGAAAATAATGAAAATCTGGGATTTGACGAATCACCCATCATAAGAATAGACTGGGCAGTAATCAATGCTCAAAAAGGAAAGATAGTAGAGCAACGTACCTTTTTGGTACCAAGAACAGAGGAAAACGGTTTCTCAAATCACGAAAATGAGCCTGATGATACTACTGACACACTGTTGGACTCAAAACATGAAGAATTGCACACTACTATTCATCAGATTGAGGATTCGCTTTCGTTATTTGATGTAGATGAACTGAGAGTTCAGTTCATTACGGACGGCCCCCTTCATCTACGACAATGTTTACACCCAAGGGCCACAAAACAATGCATACAATTGTCAAAAAATTTTTATGAATACTTCGACTTACGAAAAGAATATAAGAAATACAGTGGCAAATCAGGAAATAAAACTGCTTATGATATAGCTGCTGAGCTACATATAGATATCAAAAGACCAATTGATGATCCAGGAGACTATTGTCGATTATGTGCCAAGATTGTTCAACACTTAGTTCGAAATGGACATCATTTTGAGGAACCAGAAATCATAATGAGCAGGCTAGAACCTGGAATGAGCGTTGGATTTGTTAGGGATGAAACTATTGTGAGAACTAGAGGTTTACCTTGGCAGGTATCAGATCATGACGTTGCAAACTTTTTTAAAGGACTCAACATTGTCAAGGGTGGAGTGGCATTATGTTTGAACTTCAGGGGAAGACGAAATGGAGAAGCTCTACTACGCTTTGAAAAAGCTGAACACAGAGAATTAGCATTAAAAAGGCACAAGCATCACTTGTCTGGGAGATACATTGAGCTTGATTATTTAGACGACCAACGAGTTGCTCTGTTTTCGGCAAGAAATCTTGATGAAAAAGCGCTGAATATGCAACACGATAGAGTTCACCCACCATAGCTGAATATAACACAATCTCCAGG

Protein

Uniprot

Uniprot term	Description
Q6DEZ7	Epithelial splicing regulatory protein 1 OS=Xenopus tropicalis OX=8364 GN=esrp1 PE=2 SV=1
Q3US41	Epithelial splicing regulatory protein 1 OS=Mus musculus OX=10090 GN=Esrp1 PE=1 SV=2
Q7ZY29	Epithelial splicing regulatory protein 1 OS=Xenopus laevis OX=8355 GN=esrp1 PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
--	--	--	--	--

InterPro

InterPro term	Type	Description	Source
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR036397	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47027	REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan