Gene detail

Detailed information of scaffold3947.g2.t1 in Aurelia aurita complex sp. Pacific

Genomic Location: scaffold3947:2596...7137
NR annotation: no NCBI-NR hit recorded
Species Aurelia aurita complex sp. Pacific · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF10168 all species →	Nup88	Nuclear pore component	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR037700 all species →	Family	Nucleoporin NUP88/NUP82	Interproscan
IPR019321 all species →	Family	Nucleoporin Nup88	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13257 all species →	NUCLEOPORIN NUP84-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000055 all species →	Biological Process	ribosomal large subunit export from nucleus	Interproscan
GO:0000056 all species →	Biological Process	ribosomal small subunit export from nucleus	Interproscan
GO:0005643 all species →	Cellular Component	nuclear pore	Interproscan
GO:0006406 all species →	Biological Process	mRNA export from nucleus	Interproscan
GO:0006606 all species →	Biological Process	protein import into nucleus	Interproscan
GO:0006913 all species →	Biological Process	nucleocytoplasmic transport	Interproscan
GO:0017056 all species →	Molecular Function	structural constituent of nuclear pore	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for scaffold3947.g2.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.