Gene detail

Detailed information of scaffold396.g2.t7 in Aurelia aurita

Genomic Location: scaffold396:19766...47176
NR annotation: no NCBI-NR hit recorded
Species Aurelia aurita · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

scaffold396.g2.t7

cgttaaaatgtatttccttcttgacagggcaaaggcacagaagatgtcaacagatatcgtaactgcaagcttctttatcttgatattgctaacatacacgccatgagagacagcatcgataaattgcaaactgtgtgtgaggggatggccgaaaataaatggttttcgcaattggaatcgacacattggctcacacatataagtaatgttatgagggagaatttgccaccggatgcgaaacaacgatatgcagagaagttaaaacttgcgaggttggagagatgcccatacaagataaaagcggatgaatggcgagataacccggaagaatggccagcagttggatatcttgatttataccattacttgatcaaaactccagggatatattctgctgatgctatggctaattataagtcattagatgcctacaactatttttcatcttgttgggtccaaacaatataccacatcaaaagacctggagtaattattgctaggtgcgatgtgaagccatcataccgacttaacgaagaaccccacatccgtggattgcaattaaggactgtggaacaattgttgctggccattgtaattgcatggcaggctgcattatacaagatagaagcagctgtgcgtttgggctttgctaatgctacaccaacagagatgccttgtcagtggcatgcatgctatacaaaagatgttaaacctgcccctatttcacaaatttatttttacaaggaagaagctaaaaaaaattggaaatctcctttggctaggccattgccagcagcatgtgaataccagaaagcagagtttttaaaattcctggcaggtaacaaaaagaaaagtgttgctctctctctctttggagaatatagccattcttttattccaacaaagaaagcaaaccaagttagccaggtcccctctcctctcaataagctatatgatccacttaatagagacctgcctgaagacaagttgtcagagaaattttctgcatttatcaattctatggaaatgccagaaagcagtttgaaatatattgaagaggtgactcggctccaatcagcaagtggtacttggtatgagcaacgaattggtagaatttctggttcaacgattcatgatgctctgcataccagtgtcacaaagtgctctaggtccctgttagaaaggctgacaacaatgcaagacaaagaattaaatgttccagcattaaattgggcaagaaagcaagaacaggtagcattttttcattaccaacaagctattgtatcggaaaattgtgaagaatccaatagcatccctgaagtgataattcaagaacagtttcatcatgaaaatttgatcatcagtaaatgtgggcttttggttcacaaaacacatcagtttcttggtgcttctcctgacggcatcatccagtgcaactgctgtggtaaaggagttttagagataaaatgcccatattccttgcgcaatgaaagcttgacagtttatatcttaaccacagacacgagagattttttcttagacaagtcaatgcatttgaaaaccaaacataggtactttagtcaagtgcagttgcaaatgtatgttgcagaggcaagttattgtgattttgttgtttggacaccaagggagctattggttacaagaattgagtttgatgaagaatttgcaaatgaaatgattcaaaaagtcgagtcattgtggaggaaatgtgttcttcctgagctttttacaagaagactacaaaatgctaaagccattgaaagtggaagtcaagctgaaagtgaaggtgcaacgctagtggcacattatgtcagcgagaagggagtttcagtacttgttcactgttcagatggatgggacagaaccccacaacttacatctttggctcagatcatgttggacgcatactaccgaacttttgatggattcaagggtgcaacgctagtggcacattatgtcagcgagaagggagtttcagtacttgttcactgttcagatggatgggacagaaccccacaacttacatctttggctcagatcatgttggacgcatactaccgaacttttgatggattcaaggttttagtagaaaaagactggatttcattcggccatcgctttcgagatcgtcttggggattcatcgtgtgctaatcaaagatcgcccgtatttttgcagtttcttgagtgtgtttggcaggcaaaagaaatcagacttaaagagggatccagaacaccttgtttctatggtcttcccaaaatccacaagacattcgaaaagttcccccctcttcgtccaatttgcagtgggtacaattcgtgttccacaagattatcagaatgggtagatagttttctgaaaccagcagcaatgcagacaagttcatacatcagagataccaccgacttcgtcaacaaaatcgaggaattcaaaaacaacatcaacaagagcaaagatttctacatcgtaacaatggacgtatcctcgctgtatccaaacatcgatcatgaggaaggtgtagctgcatgtagagaagcacttgaaagacgcatagataaatctgttcctagcgatgttatagcagaccttataaccttcatcctcaaaagcaacacactctctttcgacgacaaattctaccatcaaatcaaaggaactgcaatgggtacacccatggctgtaaactttgccaatctgtttatgtccaagtttgaaaccgatttgttgcgcgactatcagaaagaataccataaaggccctgttatgtggatacgatacatagacgatatatttttcgtatgggatcatgatcaagacacgctgaaacattttctatcttattgcaactcatacgctacaaagaattcttacaactctagcattaaatttacaatggaatattcaagatctgatgttgtcttcctggacacaaaagtaaagaagcatgatggagcattgataacagaactgcactgtaaaccaacagctacgcacacctaccttcacaagctatcagaccatccaacacatacactacgcgcgaatccgttgtctcagtttattagaataagacgtatttgccatctcttgactgactatcgtaagcatgcaacacagttcataaacttttatgcaaacagaggatattctgtgaaaacacttacaaagattgcaaccgaagtagaagcacgagatcgcaacactctgttacataagaaagttactgagaaagataatgatagtagagtacctctagtaatcgattggcaccagaagtttaagggactctcccaaatattacatagacactacaatttcatgattattgagcatccagatctaaaacaggtatttccagaagcaccaataatttcgtacagaagaaatcctaacttgcacagtcagctcgttaaaacaaagcgacaaaaagatacgaaggccggttattccgttcggtgcacattagagaaaataaagaaaagaggacgtccatgcaaattgtgttgccacatgggacagaaagattcagtaacaaatgctaagactgggaaaacgtgccgtattgacggtggttcttgtaatagcaaaaatgtaatctatgctgctgaatgcaccaaacataacttactctacatcggatacacatctacaacattgagccaaagatttaacaaacaccgtagcgatgcgagacatgatccagatgccacagaattgggcaaacatttccatgagagtgaatcatgcaatttcgatcatgacttgaaagttcacatcttgcaaagattagaaggagatcgtgacaaactagaacattacgaaaacttatggatatcacgattagactctagagaaccatacggactaaactctagccttaatgagctcggaaagacattttataagttatacaagcatatttagcngtaaacctctgcatacttacttttgcagacattaatttcgacaattttgtttctccagaagcatttttgaccctttccatcattaatttattttcatagttgattatcttttaaccagtcaataaaatagtcataaataa

Transcript

scaffold396.g2.t7

CGTTAAAATGTATTTCCTTCTTGACAGGGCAAAGGCACAGAAGATGTCAACAGATATCGTAACTGCAAGCTTCTTTATCTTGATATTGCTAACATACACGCCATGAGAGACAGCATCGATAAATTGCAAACTGTGTGTGAGGGGATGGCCGAAAATAAATGGTTTTCGCAATTGGAATCGACACATTGGCTCACACATATAAGTAATGTTATGAGGGAGAATTTGCCACCGGATGCGAAACAACGATATGCAGAGAAGTTAAAACTTGCGAGGTTGGAGAGATGCCCATACAAGATAAAAGCGGATGAATGGCGAGATAACCCGGAAGAATGGCCAGCAGTTGGATATCTTGATTTATACCATTACTTGATCAAAACTCCAGGGATATATTCTGCTGATGCTATGGCTAATTATAAGTCATTAGATGCCTACAACTATTTTTCATCTTGTTGGGTCCAAACAATATACCACATCAAAAGACCTGGAGTAATTATTGCTAGGTGCGATGTGAAGCCATCATACCGACTTAACGAAGAACCCCACATCCGTGGATTGCAATTAAGGACTGTGGAACAATTGTTGCTGGCCATTGTAATTGCATGGCAGGCTGCATTATACAAGATAGAAGCAGCTGTGCGTTTGGGCTTTGCTAATGCTACACCAACAGAGATGCCTTGTCAGTGGCATGCATGCTATACAAAAGATGTTAAACCTGCCCCTATTTCACAAATTTATTTTTACAAGGAAGAAGCTAAAAAAAATTGGAAATCTCCTTTGGCTAGGCCATTGCCAGCAGCATGTGAATACCAGAAAGCAGAGTTTTTAAAATTCCTGGCAGGTAACAAAAAGAAAAGTGTTGCTCTCTCTCTCTTTGGAGAATATAGCCATTCTTTTATTCCAACAAAGAAAGCAAACCAAGTTAGCCAGGTCCCCTCTCCTCTCAATAAGCTATATGATCCACTTAATAGAGACCTGCCTGAAGACAAGTTGTCAGAGAAATTTTCTGCATTTATCAATTCTATGGAAATGCCAGAAAGCAGTTTGAAATATATTGAAGAGGTGACTCGGCTCCAATCAGCAAGTGGTACTTGGTATGAGCAACGAATTGGTAGAATTTCTGGTTCAACGATTCATGATGCTCTGCATACCAGTGTCACAAAGTGCTCTAGGTCCCTGTTAGAAAGGCTGACAACAATGCAAGACAAAGAATTAAATGTTCCAGCATTAAATTGGGCAAGAAAGCAAGAACAGGTAGCATTTTTTCATTACCAACAAGCTATTGTATCGGAAAATTGTGAAGAATCCAATAGCATCCCTGAAGTGATAATTCAAGAACAGTTTCATCATGAAAATTTGATCATCAGTAAATGTGGGCTTTTGGTTCACAAAACACATCAGTTTCTTGGTGCTTCTCCTGACGGCATCATCCAGTGCAACTGCTGTGGTAAAGGAGTTTTAGAGATAAAATGCCCATATTCCTTGCGCAATGAAAGCTTGACAGTTTATATCTTAACCACAGACACGAGAGATTTTTTCTTAGACAAGTCAATGCATTTGAAAACCAAACATAGGTACTTTAGTCAAGTGCAGTTGCAAATGTATGTTGCAGAGGCAAGTTATTGTGATTTTGTTGTTTGGACACCAAGGGAGCTATTGGTTACAAGAATTGAGTTTGATGAAGAATTTGCAAATGAAATGATTCAAAAAGTCGAGTCATTGTGGAGGAAATGTGTTCTTCCTGAGCTTTTTACAAGAAGACTACAAAATGCTAAAGCCATTGAAAGTGGAAGTCAAGCTGAAAGTGAAGGTGCAACGCTAGTGGCACATTATGTCAGCGAGAAGGGAGTTTCAGTACTTGTTCACTGTTCAGATGGATGGGACAGAACCCCACAACTTACATCTTTGGCTCAGATCATGTTGGACGCATACTACCGAACTTTTGATGGATTCAAGGGTGCAACGCTAGTGGCACATTATGTCAGCGAGAAGGGAGTTTCAGTACTTGTTCACTGTTCAGATGGATGGGACAGAACCCCACAACTTACATCTTTGGCTCAGATCATGTTGGACGCATACTACCGAACTTTTGATGGATTCAAGGTTTTAGTAGAAAAAGACTGGATTTCATTCGGCCATCGCTTTCGAGATCGTCTTGGGGATTCATCGTGTGCTAATCAAAGATCGCCCGTATTTTTGCAGTTTCTTGAGTGTGTTTGGCAGGCAAaagaaatcagacttaaagagggatccagaacaccttgtttctatggtcttcccaaaatccacaagacattcgaaaagttcccccctcttcgtccaatttgcagtgggtacaattcgtgttccacaagattatcagaatgggtagatagttttctgaaaccagcagcaatgcagacaagttcatacatcagagataccaccgacttcgtcaacaaaatcgaggaattcaaaaacaacatcaacaagagcaaagatttctacatcgtaacaatggacgtatcctcgctgtatccaaacatcgatcatgaggaaggtgtagctgcatgtagagaagcacttgaaagacgcatagataaatctgttcctagcgatgttatagcagaccttataaccttcatcctcaaaagcaacacactctctttcgacgacaaattctaccatcaaatcaaaggaactgcaatgggtacacccatggctgtaaactttgccaatctgtttatgtccaagtttgaaaccgatttgttgcgcgactatcagaaagaataccataaaggccctgttatgtggatacgatacatagacgatatatttttcgtatgggatcatgatcaagacacgctgaaacattttctatcttattgcaactcatacgctacaaagaattcttacaactctagcattaaatttacaatggaatattcaagatctgatgttgtcttcctggacacaaaagtaaagaagcatgatggagcattgataacagaactgcactgtaaaccaacagctacgcacacctaccttcacaagctatcagaccatccaacacatacactacgcgcgaatccgttgtctcagtttattagaataagacgtatttgccatctcttgactgactatcgtaagcatgcaacacagttcataaacttttatgcaaacagaggatattctgtgaaaacacttacaaagattgcaaccgaagtagaagcacgagatcgcaacactctgttacataagaaagttactgagaaagataatgatagtagagtacctctagtaatcgattggcaccagaagtttaagggactctcccaaatattacatagacactacaatttcatgattattgagcatccagatctaaaacaggtatttccagaagcaccaataatttcgtacagaagaaatcctaacttgcacagtcagctcgttaaaacaaagcgacaaaaagatacgaaggccggttattccgttcggtgcacattagagaaaataaagaaaagaggacgtccatgcaaattgtgttgccacatgggacagaaagattcagtaacaaatgctaagactgggaaaacgtgccgtattgacggtggttcttgtaatagcaaaaatgtaatctatgctgctgaatgcaccaaacataacttactctacatcggatacacatctacaacattgagccaaagatttaacaaacaccgtagcgatgcgagacatgatccagatgccacagaattgggcaaacatttccatgagagtgaatcatgcaatttcgatcatgacttgaaagttcacatcttgcaaagattagaaggagatcgtgacaaactagaacattacgaaaacttatggatatcacgattagactctagagaaccatacggactaaactctagccttaatgagctcggaaagacattttataagttatacaagcatatttagcNGTAAACCTCTGCATACTTACTTTTGCAGACATTAATTTCGACAATTTTGTTTCTCCAGAAGCATTTTTGACCCTTTCCATCATTAATTTATTTTCATAGTTGATTATCTTTTAACCAGTCAATAAAATAGTCATAAATAA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01541 all species →	GIY-YIG	GIY-YIG catalytic domain	Domain	Interproscan
PF09588 all species →	YqaJ	YqaJ-like viral recombinase domain	Domain	Interproscan
PF00078 all species →	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan
PF06602 all species →	Myotub-related	Myotubularin-like phosphatase domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR029021 all species →	Homologous_superfamily	Protein-tyrosine phosphatase-like	Interproscan
IPR000477 all species →	Domain	Reverse transcriptase domain	Interproscan
IPR011604 all species →	Homologous_superfamily	PD-(D/E)XK endonuclease-like domain superfamily	Interproscan
IPR000305 all species →	Domain	GIY-YIG endonuclease	Interproscan
IPR011335 all species →	Homologous_superfamily	Restriction endonuclease type II-like	Interproscan
IPR035901 all species →	Homologous_superfamily	GIY-YIG endonuclease superfamily	Interproscan
IPR010569 all species →	Domain	Myotubularin-like, phosphatase domain	Interproscan
IPR019080 all species →	Domain	YqaJ viral recombinase	Interproscan
IPR016130 all species →	Active_site	Protein-tyrosine phosphatase, active site	Interproscan
IPR043502 all species →	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21301 all species →	REVERSE TRANSCRIPTASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016311 all species →	Biological Process	dephosphorylation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for scaffold396.g2.t7.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.