Gene detail

Detailed information of scaffold396.g3.t1 in Aurelia aurita complex sp. Pacific

Genomic Location: scaffold396:27893...90304
NR annotation: no NCBI-NR hit recorded
Species Aurelia aurita complex sp. Pacific · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

scaffold396.g3.t1

ttgtaatgtttacatattttgagtatttcaaaactggcgccaaatccatctgcataatcactcggcccaggcccatcatttgcagcaataaaaacatttccagaagggagccgaacgaccaggcttgatttgcttcaagagaaattgtacagacattactggaccctgatcgccttgaaagcaatcaccgatcgctgtacaaagacaccggttttccagctaaataatatccaacaagattctgctcttcgagttgttgcattattcaagaaacgctttttttctatgccgttgttactgcctgtcccttaggccttgccaaacacaagcaaacaactcgttgcaaccaaggacataaactggtattgatggcaaaataatctggtatttggcacaatttgtgacgaagcaccgtcttatcaaagggtttcttatcatttaagaccaaatatttaatgtttcattaataattagcagagaaaagactgtgtttcaaaggacagccttctcaaagtgaggaggccagagacatgtttggtgttctcctccaccagtggctactacaagcaagtttgttttgacattggttccctagttgttgaaaccgaatatgatcggaactgagtgggtttcgaaagccattttcaagtgcattttacagcaaattttgtaaggctttcgatttccttgataaatttgccataaaaagcaaagcggcaggatggtggagtctgcaaatacgacggcagtcatgcaagaccttgttatgctgcaaagaatggtcgacatgcgaattacatcactggaaggcctccgaaaagatggctcatctggatctgatattattctacatgaaataagaaccgtcgagggtaaactgatgaaactcttttcaaaacaactgtcaaccatttacaaaaatcaagaagcacttagtacagtcaatgaagatttgtggcagtatccaaagcttgagcaattcctagttgttgttggaattgacagctactccacagagagaatcctagaagcatgccaggatcttcaagacctgtgtaatttatcagatgaaagaattcgacatttatttaatctgcctgcattcgatgacgactttgattatgattatgatgatgaaaacaatgtcttaactgaagatcaatacagcggagcaaggagactaacttctgccttgaagatattgagaaattattcaagttgcctcagtaatggggagaagacaaacgatctaatttgggaatcttgggacaaagcagcgtcagatatagatgactgggccagcagcgttggatctgcgtatgatgaagtagtgccgcatagaaataaagcacttagccttccgaatgcagtgaggcatggcctaggcagtagatcgattccacccagcccagtattgaaatcgaaaaatgaagtttcaatcaccaggagcaaatctgatgaggccaatgttggacaaagagtccaccttgacagctgcagtagcagtggaagtgcgcacgcagttgcaccaatgagagggcctgtttcaaaacctaggccgttgaatctgactgtaacgaatacaaatggctgtgaatcaagttcaactgatttcgaaagtcaatcaaatccacaatcagtttcacagtcaccaagaacaccaactcgactattccattttggcatgggacattcaattaaacacatgttttcagcaaagacatttctcatctcattaacttgcgaatattgtcatcgtctgatgtttgttggagtcaaatgcaaagaatgcggattcaaatgccacaagaaatgttctcgaaaggctccaccatcatgtggacttccacctcaattagagaagatatttatcgatacgttacgtcatgactcagctggaaatgcttgtttgcttgattttagtgatatgtccactgacacaatgattgaaactcatggcagctcgaattcaaaatcaagtagtggaacaaagagtacagaatcgacgatctccgaaagcgatgatttcgcagttgataatctggacagccaaatttcagacgtaattccacatcgaatccgactaagaggcgatgaacccttaacaaaggcagaaaaattggacatgctaatgaatcttcacgaacgtggcagcctgatgtctgaatgggtgattccattcgcagatatcgaacttggtgatatgatcggcaaagggaggatgggcgcagtatataaagcgaaatggcatggtgaagttgcagttaaaattctacatgtggaaaatccaagcgaaaaagagaaaacagctttcaaatacaaggtgcagactttcaggaaaacgaggcatgaaaacctcattctattcatgggggcttgcatggagccgcctacattagcaatcgtcacaagagcgaaatggcatggtgaagttgcagttaaaattctacatgtggaaaatccaagcgaaaaagagaaaacagctttcaaatacaaggtgcagacgttcaggaaaacgaggcacgaaaacctcattctattcatgggcgcttgcatggagccgcctacattagcaatcgtcacaagcttttgcaaaggattgacacttcatcagcatattcacgaacaaaatatcacattcgatagcaacagaatcattgctatgatcacacaagtcgcacaaggtatgggctaccttcacgctcgtggtattgtacataaggacctgaattcgaagaatctatttgtcgaaaaacatcgaattgttatcactgactttggcttgcttaatgttgcagatacaaggtctccgttagaaagacctggatggctattgataacgaatcattggctgtgctatcaagctccagaaattattcgagcattggacgcattgttaccaggcagcgagctgcatttgtacacaaaagaaacagatatttatgctttcgggacagtatggtatgaactattgtcaaaacgatggccatttaatgatcaatcagtcgaatcaacgatttggcagattggcaaaggattcaagcaatcactaagcaaattagaagtttctagagaagcgaaggacatcctctcgatgtgttgggcctacaatccggagcatcgacctcccttcaaccagctcacaaaagcatttgaaagactaccaaaaaagaaactgatacgaagcccttcgcagccaatgtaccctatgtcgagatcagccgatgcactggttcttttttaaattgacaagaaagtcgcgggaaacgccgtggaatcgaagaatattgcagcgatccgcggatggcctgaggatgttctagagaacgcaagacattgtggaattttagggataaccctctcaagccgtcagtttcgggtcggcaaaatgcaggccctaacactgggaaagaatactgatcggaatttgttcgctttcaagtggaatacttagagcgctatgcttccgtatccggtcggatccaaatgatgacattttatcagttcagtttttagagtgggacgtaacgatgtaaaatcaagtgtctttttaatgtgtagcagttgcgaggggccaaaggagctggaactttgggtaaccaaagggttttggtttagcttctaagagagtgtttgcgagtgaggttaactgcaagtttgtccattctgctcataccctcctgtaattgtttctcgaaagaacgctcaagttgtcttgtctcctggagaggatgttccactgtgaacttcaaggagtgctgatgtctcgttcaattcctaccctgaccatcccctcccgggccacccctggaatttgctcaaaaaatattccctgcccccgagcatttgaccgtaaattttccttcaccccccggcatttgagtggcatttgacaaaaacaggagcttcttcctatacagtaactggaaatatggctttttctcagtgcccggcccccgggcattcgccacatgaaatttgcccggcccctgggcatttgtgtaggaaatgtttgttgaccccgggctgcccggagggtggtcagggtatgaattgaacgagatctaacaagttcagcattttatgcctttaaatatcacaatgactgtagtgaaaatgtacataaaacaatcaatcacttagaaacataaatgaaaacctcaactctagcattacaatggtctgacaaatactgtttaacattttcgtctgacaaaggtcactaaaagatcgtgacggcgaagagtctctgatacgaccaggacaatgctattcattaagaaagctgcatgttttcaacgaaggacacttagcgtcaactttagaagcaaaaaggacccattttgccccactctctcaccaatttggcgcaatttggcgctcttagttagttagtccatgccctatacgcagttgctccttgcttccaaactggcgaaattcaatttattatgttttgctggcaataattttaatttctttaattttatttcaagagtagaaatgttagaattttaatgctgtggacattctgaaaactaaatcttcagaaagcatttaagccttatttttatacttaggatattactttcatgcatatttaaacagtttttttcccaatattatacgattattattcacatatgtttggttcacactagagtaaaaatacagtaggattgggtcaaagctttttccatttggggggagggaggctggggagggagggaggcatagtaaagatacttagggaagtgccgtcacgggtaagaatgtttggactttagtctggccaatgttatactttttagcgattttggcccatgtcgaggtatatttttggaaattttggtctagtgaaggccaggcatttgcgaactttgtccaaaaagtaccgagttttagcgtctttaatcaagaaatttgtctagccaatgatatcattttcacaaaaatatctcttgccaacagtacttttttccaaatgctgaaggcacaccactcccataccctacccaaatttagcagagagcccccgccccatggcattttctgaatattttaaacgcactcgtatcagggacgccaaaacaacaaatttcggccattttc

Transcript

scaffold396.g3.t1

TTGTAATGTTTACATATTTTGAGTATTTCAAAACTGGCGCCAAATCCATCTGCATAATCACTCGGCCCAGGCCCATCATTTGCAGCAATAAAAACATTTCCAGAAGGGAGCCGAACGACCAGGCTTGATTTGCTTCAAGAGAAATTGTACAGACATTACTGGACCCTGATCGCCTTGAAAGCAATCACCGATCGCTGTACAAAGACACCGGTTTTCCAGCTAAATAATATCCAACAAGATTCTGCTCTTCGAGTTGTTGCATTATTCAAGAAACGCTTTTTTTCTATGCCGTTGTTACTGCCTGTCCCTTAGGCCTTGCCAAACACAAGCAAACAACTCGTTGCAACCAAGGACATAAACTGGTATTGATGGCAAAATAATCTGGTATTTGGCACAATTTGTGACGAAGCACCGTCTTATCAAAGGGTTTCTTATCATTTAAGACCAAATATTTAATGTTTCATTAATAATTAGCAGAGAAAAGACTGTGTTTCAAAGGACAGCCTTCTCAAAGTGAGGAGGCCAGAGACATGTTTGGTGTTCTCCTCCACCAGTGGCTACTACAAGCAAGTTTGTTTTGACATTGGTTCCCTAGTTGTTGAAACCGAATATGATCGGAACTGAGTGGGTTTCGAAAGCCATTTTCAAGTGCATTTTACAGCAAATTTTGTAAGGCTTTCGATTTCCTTGATAAATTTGCCATAAAAAGCAAAGCGGCAGGATGGTGGAGTCTGCAAATACGACGGCAGTCATGCAAGACCTTGTTATGCTGCAAAGAATGGTCGACATGCGAATTACATCACTGGAAGGCCTCCGAAAAGATGGCTCATCTGGATCTGATATTATTCTACATGAAATAAGAACCGTCGAGGGTAAACTGATGAAACTCTTTTCAAAACAACTGTCAACCATTTACAAAAATCAAGAAGCACTTAGTACAGTCAATGAAGATTTGTGGCAGTATCCAAAGCTTGAGCAATTCCTAGTTGTTGTTGGAATTGACAGCTACTCCACAGAGAGAATCCTAGAAGCATGCCAGGATCTTCAAGACCTGTGTAATTTATCAGATGAAAGAATTCGACATTTATTTAATCTGCCTGCATTCgatgacgactttgattatgattatgatgatgaAAACAATGTCTTAACTGAAGATCAATACAGCGGAGCAAGGAGACTAACTTCTGCCTTGAAGATATTGAGAAATTATTCAAGTTGCCTCAGTAATGGGGAGAAGACAAACGATCTAATTTGGGAATCTTGGGACAAAGCAGCGTCAGATATAGATGACTGGGCCAGCAGCGTTGGATCTGCGTATGATGAAGTAGTGCCGCATAGAAATAAAGCACTTAGCCTTCCGAATGCAGTGAGGCATGGCCTAGGCAGTAGATCGATTCCACCCAGCCCAGTATTGAAATCGAAAAATGAAGTTTCAATCACCAGGAGCAAATCTGATGAGGCCAATGTTGGACAAAGAGTCCACCTTGACAGCTGCAGTAGCAGTGGAAGTGCGCACGCAGTTGCACCAATGAGAGGGCCTGTTTCAAAACCTAGGCCGTTGAATCTGACTGTAACGAATACAAATGGCTGTGAATCAAGTTCAACTGATTTCGAAAGTCAATCAAATCCACAATCAGTTTCACAGTCACCAAGAACACCAACTCGACTATTCCATTTTGGCATGGGACATTCAATTAAACACATGTTTTCAGCAAAGACATTTCTCATCTCATTAACTTGCGAATATTGTCATCGTCTGATGTTTGTTGGAGTCAAATGCAAAGAATGCGGATTCAAATGCCACAAGAAATGTTCTCGAAAGGCTCCACCATCATGTGGACTTCCACCTCAATTAGAGAAGATATTTATCGATACGTTACGTCATGACTCAGCTGGAAATGCTTGTTTGCTTGATTTTAGTGATATGTCCACTGACACAATGATTGAAACTCATGGCAGCTCGAATTCAAAATCAAGTAGTGGAACAAAGAGTACAGAATCGACGATCTCCGAAAGCGATGATTTCGCAGTTGATAATCTGGACAGCCAAATTTCAGACGTAATTCCACATCGAATCCGACTAAGAGGCGATGAACCCTTAACAAAGGCAGAAAAATTGGACATGCTAATGAATCTTCACGAACGTGGCAGCCTGATGTCTGAATGGGTGATTCCATTCGCAGATATCGAACTTGGTGATATGATCGGCAAAGGGAGGATGGGCGCAGTATATAAAGCGAAATGGCATGGTGAAGTTGCAGTTAAAATTCTACATGTGGAAAATCCAAGCGAAAAAGAGAAAACAGCTTTCAAATACAAGGTGCAGACTTTCAGGAAAACGAGGCATGAAAACCTCATTCTATTCATGGGGGCTTGCATGGAGCCGCCTACATTAGCAATCGTCACAAGAGCGAAATGGCATGGTGAAGTTGCAGTTAAAATTCTACATGTGGAAAATCCAAGCGAAAAAGAGAAAACAGCTTTCAAATACAAGGTGCAGACGTTCAGGAAAACGAGGCACGAAAACCTCATTCTATTCATGGGCGCTTGCATGGAGCCGCCTACATTAGCAATCGTCACAAGCTTTTGCAAAGGATTGACACTTCATCAGCATATTCACGAACAAAATATCACATTCGATAGCAACAGAATCATTGCTATGATCACACAAGTCGCACAAGGTATGGGCTACCTTCACGCTCGTGGTATTGTACATAAGGACCTGAATTCGAAGAATCTATTTGTCGAAAAACATCGAATTGTTATCACTGACTTTGGCTTGCTTAATGTTGCAGATACAAGGTCTCCGTTAGAAAGACCTGGATGGCTATTGATAACGAATCATTGGCTGTGCTATCAAGCTCCAGAAATTATTCGAGCATTGGACGCATTGTTACCAGGCAGCGAGCTGCATTTGTACACAAAAGAAACAGATATTTATGCTTTCGGGACAGTATGGTATGAACTATTGTCAAAACGATGGCCATTTAATGATCAATCAGTCGAATCAACGATTTGGCAGATTGGCAAAGGATTCAAGCAATCACTAAGCAAATTAGAAGTTTCTAGAGAAGCGAAGGACATCCTCTCGATGTGTTGGGCCTACAATCCGGAGCATCGACCTCCCTTCAACCAGCTCACAAAAGCATTTGAAAGACTACCAAAAAAGAAACTGATACGAAGCCCTTCGCAGCCAATGTACCCTATGTCGAGATCAGCCGATGCACTGGTTCTTTTTTAAATTGACAAGAAAGTCGCGGGAAACGCCGTGGAATCGAAGAATATTGCAGCGATCCGCGGATGGCCTGAGGATGTTCTAGAGAACGCAAGACATTGTGGAATTTTAGGGATAACCCTCTCAAGCCGTCAGTTTCGGGTCGGCAAAATGCAGGCCCTAACACTGGGAAAGAATACTGATCGGAATTTGTTCGCTTTCAAGTGGAATACTTAGAGCGCTATGCTTCCGTATCCGGTCGGATCCAAATGATGACATTTTATCAGTTCAGTTTTTAGAGTGGGACGTAACGATGTAAAATCAAGTGTCTTTTTAATGTGTAGCAGTTGCGAGGGGCCAAAGGAGCTGGAACTTTGGGTAACCAAAGGGTTTTGGTTTAGCTTCTAAGAGAGTGTTTGCGAGTGAGGTTAACTGCAAGTTTGTCCATTCTGCTCATACCCTCCTGTAATTGTTTCTCGAAAGAACGCTCAAGTTGTCTTGTCTCCTGGAGAGGATGTTCCACTGTGAACTTCAAGGAGTGCTGatgtctcgttcaattcctaccctgaccatcccctcccgggccacccctggaatttgctcaaaaaatattccctgcccccgagcatttgaccgtaaattttccttcaccccccggcatttgagtggcatttgacaaaaacaggagcttcttcctatacagtaactggaaatatggctttttctcagtgcccggcccccgggcattcgccacatgaaatttgcccggcccctgggcatttgtgtaggaaatgtttgttgaccccgggctgcccggagggtggtcagggtatgaattgaacgagatctaaCAAGTTCAGCATTTTATGCCTTTAAATATCACAATGACTGTAGTGAAAATGTACATAAAACAATCAATCACTTAGAAACATAAATGAAAACCTCAACTCTAGCATTACAATGGTCTGACAAATACTGTTTAACATTTTCGTCTGACAAAGGTCACTAAAAGATCGTGACGGCGAAGAGTCTCTGATACGACCAGGACAATGCTATTCATTAAGAAAGCTGCATGTTTTCAACGAAGGACACTTAGCGTCAACTTTAGAAGCAAAAAGGACCCATTTTGCCCCACTCTCTCACCAATTTGGCGCAATTTGGCGCTCTTAGTTAGTTAGTCCATGCCCTATACGCAGTTGCTCCTTGCTTCCAAACTGGCGAAATTCAATTTATTATGTTTTGCTGGCAATAATTTTAATTTCTTTAATTTTATTTCAAGAGTAGAAATGTTAGAATTTTAATGCTGTGGACATTCTGAAAACTAAATCTTCAGAAAGCATTTAAGCCTTATTTTTATACTTAGGATATTACTTTCATGCATATTTAAACAGTTTTTTTCCCAATATTATACGATTATTATTCACATATGTTTGGTTCACACTAGAGTAAAAATACAGTAGGATTGGGTCAAAGCTTTTTCCATTTGGGGGGAGGGAGGCTGGGGAGggagggaggcatagtaaagatacttagggaagtgccgtcacgggtaagaatgtttggactttagtctggccaatgttatactttttagcgattttggcccatgtcgaggtatatttttggaaattttggtctagtgaaggccaGGCATTTGCGAACTTTGTCCAAAAAGTACCGAGTTTTAGCGTCTTTAATCAAGAAATTTGTCTAGCCAATGATATCATTTTCACAAAAATATCTCTTGCCAACAGTACTTTTTTCCAAATGCTGAAGGCACACCACTCCCATACCCTACCCAAATTTAGCAGAGAGCCCCCGCCCCATGGCATTTTCTGAATATTTTAAACGCACTCGTATCAGGGACGCCAAAACAACAAATTTCGGCCATTTTC

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07714 all species →	PK_Tyr_Ser-Thr	Protein tyrosine and serine/threonine kinase	Domain	Interproscan
PF20406 all species →	SAM_KSR1_N	Kinase suppressor RAS 1 N-terminal helical hairpin	Domain	Interproscan
PF00130 all species →	C1_1	Phorbol esters/diacylglycerol binding domain (C1 domain)	Domain	Interproscan
PF13543 all species →	SAM_KSR1	SAM like domain present in kinase suppressor RAS 1	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR046349 all species →	Homologous_superfamily	C1-like domain superfamily	Interproscan
IPR017441 all species →	Binding_site	Protein kinase, ATP binding site	Interproscan
IPR011009 all species →	Homologous_superfamily	Protein kinase-like domain superfamily	Interproscan
IPR002219 all species →	Domain	Protein kinase C-like, phorbol ester/diacylglycerol-binding domain	Interproscan
IPR050167 all species →	Family	Serine/threonine-protein kinase	Interproscan
IPR000719 all species →	Domain	Protein kinase domain	Interproscan
IPR046933 all species →	Homologous_superfamily	Kinase suppressor RAS 1, N-terminal helical hairpin superfamily	Interproscan
IPR001245 all species →	Domain	Serine-threonine/tyrosine-protein kinase, catalytic domain	Interproscan
IPR046861 all species →	Domain	Kinase suppressor RAS 1, N-terminal helical hairpin	Interproscan
IPR025561 all species →	Domain	Kinase suppressor of RAS, SAM-like domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23257 all species →	SERINE-THREONINE PROTEIN KINASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0004672 all species →	Molecular Function	protein kinase activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0007165 all species →	Biological Process	signal transduction	Interproscan
GO:0007265 all species →	Biological Process	Ras protein signal transduction	Interproscan
GO:0006468 all species →	Biological Process	protein phosphorylation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K18529	KSR2; kinase suppressor of Ras 2	EC:2.7.11.1	Protein kinases	ko01001	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.