Gene detail

Detailed information of scaffold4.g201.t1 in Aurelia aurita

Genomic Location: scaffold4:2682396...2691350
NR annotation: no NCBI-NR hit recorded
Species abbreviation AAURI1 · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

scaffold4.g201.t1

ggcgaagtgccaatatggcgcagatttgcagtagttttgtgcaaaattgtgttgttttgaatctccgtcaatcactgcaatattaaactttacctcgttgcctttacttcaaatcaaagctttaaaatctgttttatcggcgtagcatgaaatttttccaagaggaactcttatttcgaggatgctaaccaaaataagatgcctagtaccgaaggccaccataaaacttcaaagaaaccagcaaaggcaaagaagtctacgcacaagaaaaagcacaagaaatcttccaaatcaagcaagccagacaagcagaagagtgtgaagtcgagcagtggcatcaagcagttgcaagtttatgaaagtttatcgtctggagagctttcaccgggtgaaatatcggaagtaagcgccgctgaagtccaggccgctgttgaaccacttaaaaatcatttagtcgaaaagaaatggaagaagaaggacaaaattaaaaatcaaaaggatccaagcccagagtttcaactaaagaaaagtaaatacgacgtgagagatgatcacggatacgaaaaacctgaaaagaagaagagccacattgttgctcctgagaatttcgctggctcaccccgatcgccgaaccacgatgtttctcgtcattctaagaagtcgaaatctcaaagggataaaggaaagggccacacgaaagcgaaaagctataattcaccaattccagagtacgttgaaccgagatatgatggaggatggagagggaattctcctcacagagggaggtcccaaagtggtccaggatgggaccattcaccatcacctgaactgtttcataagggcagtaggaaacgaaaatacccatcgcagcatccatacaggagcccaggcagccccagaaggtctcctcatagaggcagatcaccgcagcagagatacggcaatacacacacgcgaagatccccacatcatgaatattcaccccatgcaaggaagcgctcattttcgccctatggctactcgcctggcagaaacaggagatcaccatcatatgacaattattacgcaggaaggagagcaacctatgtctcaccccattatcaagagtcaccacctgttcaaagagcgtccccaaggtactctccatacaggggtggtgctgactacaggaggagaagaacaccttcaccccagtatagcaacagacgtgattattcaagaaggagtccatccccacgccatagtaaaggacaaaagaaacgcatcgaaagttcttctcatcacaaaagaaaacaaacacccccaaagaaatcaaaagagcaaacacatgaaacatctcaacacaaaggtaaagaatcaaagtcccgcaaagaggagcctgttgctgaaaagagcaaatcgaagcatagcgaaaaacacagacatcatgataataaggatgtgccaaagaataatcaaacaaaggctattagacaagaacttgcagcatctcctgttacaccagtgcaagatgaagtagattcaggaagaccaaaagcccctgccccagccactccagctcccccatccccaccaaaatcgcccaaacctctatccccaccaccaccaccaacggaagaccttccaccccctccaccacctgcaccagccccaccaccgatgccaagtgagcctcctcccccagtttctgcacccccgctgccattacccccagtgataccaggatcaggaagtagcccaagtgaatcagaaggctccccagattcttccacctcaagatctccaagcaaggcttcagaaggaactgaaaaaagtgcaggagacttggagcctggtccagacaaagatacggctagcaatgatgttgcaaaggttgtcactaaacccagctctgatggcacagtcaattcctcagagtccacaacaaaagctagtcaagcagagtggggtgaaagatgtgtcgatgtctttgatatcctgaagcaaactggagaagggacgtttgggcaggtgtacaaagcaaaggacaaactgactggtgaaatggttgctttgaagaaagtgagaactgataaagaaaaagaaggtttcccgataactgcagttagagagataaagatacttcggcagctgaatcatacaaacattgttattctgaaagaagttgtgacagataaaccaaatgccttggattttagaaaagacaagggtgccttctaccttgtctttgaatatatggagcatgatctgatgggactagtagattctggtttggtaacatttacagaagagcacatcaaatcaatgtttagacaaattatggaagggctgaattactgccacaagaagaacttccttcatagagatatcaaaggatcaaatatactgatgaataataagggtgaagtgaagcttgctgatttcggacttgcaagattatttgagaaagaaaatgaagggcgaccatacacgaatcgtgttatcacactttggtacagaccgccagagcttcttttgggagaagaaagatacgacccatcagtagatgtatggagctgtggctgtatacttggtgagttatttcgacgaaaaccactgtttcaagctaaccaagaaatgcagcaattagagctgataagtaagatctgcgggagtccaacaccagctatctggccggctgtaatctgcctgccgttatttcacacattcaaaccaaagaaacagttcaagagaagactgcgagaagaatattacgaattaccaaagtatgcattggatttattggaccaaatgctaacaatggatccttccagacggataagttcagagggagccctggcacatccctttctggctgatgtaaaacctgacaatatcagtatatctggacttcctgatttccaagactgtcacgaaatgtggtgtaaagagcgaaaaaggcaagcacgtcaaagtgagcatgcgcaaatacacagcgattcatcgcatcagacaacacaaaatcaaagttcaacattaccacccccaccccctttacccgatctggtacctgcagaaaaggacaaggggtacggatcaaatactcagcccccatttccttctgggatgggggcaggattcatgactggatcctttatcggctcaacaaaaggaccaatttcacaagtgaaaccgacgacttacgaacaaataaacaaagcagtaccccctgctcaagatttaggagtatcgagcaatttcatgccttctgttaattttcaaacaggacagacttatcagcagacggggggtttcatggcaggcgcaccgaccaactattctgcttattcatctaatgagaaaatggggaataataattacaattcgaaaggaggtgcccgcgtggataataaaccagatacaaacaattcgaaaatgtcgcaataccatggcagcagccaatcaaatacgacaaataaaccatcgcaaacattttacgaacaattatcgccagctaccgatccagaacgaaggcagcaagtcaagacattgaactatagttacaaatcattgaaagatcaaagtaaagtctcagagaaagattcagcgtatagggacgttgctggtgcgagacatcattcgcaaaatcttgcgaaccaaggaacacaagttacgacaaagcgatagcatgttcattgaattggaaatttcattggaaatttcattacgaaacaagttgcgaagaagctacagcacattttttctgaattgaccagaacgaaatttggtatcttcacgttggatttgttcgcttcttaaagtgtaaagtatttagtacttttttgaatagccgttagaaatattataaatcattttttgtttctgtgttgcaaccttgggagggaggaggattcgtttatgtttttgataacaaacaatggggacgcaa

Transcript

scaffold4.g201.t1

GGCGAAGTGCCAATATGGCGCAGATTTGCAGTAGTTTTGTGCAAAATTGTGTTGTTTTGAATCTCCGTCAATCACTGCAATATTAAACTTTACCTCGTTGCCTTTACTTCAAATCAAAGCTTTAAAATCTGTTTTATCGGCGTAGCATGAAATTTTTCCAAGAGGAACTCTTATTTCGAGGATGCTAACCAAAATAAGATGCCTAGTACCGAAGGCCACCATAAAACTTCAAAGAAACCAGCAAAGGCAAAGAAGTCTACGCACAAGAAAAAGCACAAGAAATCTTCCAAATCAAGCAAGCCAGACAAGCAGAAGAGTGTGAAGTCGAGCAGTGGCATCAAGCAGTTGCAAGTTTATGAAAGTTTATCGTCTGGAGAGCTTTCACCGGGTGAAATATCGGAAGTAAGCGCCGCTGAAGTCCAGGCCGCTGTTGAACCACTTAAAAATCATTTAGTCGAAAAGAAATGGAAGAAGAAGGACAAAATTAAAAATCAAAAGGATCCAAGCCCAGAGTTTCAACTAAAGAAAAGTAAATACGACGTGAGAGATGATCACGGATACGAAAAACCTGAAAAGAAGAAGAGCCACATTGTTGCTCCTGAGAATTTCGCTGGCTCACCCCGATCGCCGAACCACGATGTTTCTCGTCATTCTAAGAAGTCGAAATCTCAAAGGGATAAAGGAAAGGGCCACACGAAAGCGAAAAGCTATAATTCACCAATTCCAGAGTACGTTGAACCGAGATATGATGGAGGATGGAGAGGGAATTCTCCTCACAGAGGGAGGTCCCAAAGTGGTCCAGGATGGGACCATTCACCATCACCTGAACTGTTTCATAAGGGCAGTAGGAAACGAAAATACCCATCGCAGCATCCATACAGGAGCCCAGGCAGCCCCAGAAGGTCTCCTCATAGAGGCAGATCACCGCAGCAGAGATACGGCAATACACACACGCGAAGATCCCCACATCATGAATATTCACCCCATGCAAGGAAGCGCTCATTTTCGCCCTATGGCTACTCGCCTGGCAGAAACAGGAGATCACCATCATATGACAATTATTACGCAGGAAGGAGAGCAACCTATGTCTCACCCCATTATCAAGAGTCACCACCTGTTCAAAGAGCGTCCCCAAGGTACTCTCCATACAGGGGTGGTGCTGACTACAGGAGGAGAAGAACACCTTCACCCCAGTATAGCAACAGACGTGATTATTCAAGAAGGAGTCCATCCCCACGCCATAGTAAAGGACAAAAGAAACGCATCGAAAGTTCTTCTCATCACAAAAGAAAACAAACACCCCCAAAGAAATCAAAAGAGCAAACACATGAAACATCTCAACACAAAGGTAAAGAATCAAAGTCCCGCAAAGAGGAGCCTGTTGCTGAAAAGAGCAAATCGAAGCATAGCGAAAAACACAGACATCATGATAATAAGGATGTGCCAAAGAATAATCAAACAAAGGCTATTAGACAAGAACTTGCAGCATCTCCTGTTACACCAGTGCAAGATGAAGTAGATTCAGGAAGACCAAAAGCCCCTGCCCCAGCCACTCCAGCTCCCCCATCCCCACCAAAATCGCCCAAACCTCTATCCCCACCACCACCACCAACGGAAGACCTTCCACCCCCTCCACCACCTGCACCAGCCCCACCACCGATGCCAAGTGAGCCTCCTCCCCCAGTTTCTGCACCCCCGCTGCCATTACCCCCAGTGATACCAGGATCAGGAAGTAGCCCAAGTGAATCAGAAGGCTCCCCAGATTCTTCCACCTCAAGATCTCCAAGCAAGGCTTCAGAAGGAACTGAAAAAAGTGCAGGAGACTTGGAGCCTGGTCCAGACAAAGATACGGCTAGCAATGATGTTGCAAAGGTTGTCACTAAACCCAGCTCTGATGGCACAGTCAATTCCTCAGAGTCCACAACAAAAGCTAGTCAAGCAGAGTGGGGTGAAAGATGTGTCGATGTCTTTGATATCCTGAAGCAAACTGGAGAAGGGACGTTTGGGCAGGTGTACAAAGCAAAGGACAAACTGACTGGTGAAATGGTTGCTTTGAAGAAAGTGAGAACTGATAAAGAAAAAGAAGGTTTCCCGATAACTGCAGTTAGAGAGATAAAGATACTTCGGCAGCTGAATCATACAAACATTGTTATTCTGAAAGAAGTTGTGACAGATAAACCAAATGCCTTGGATTTTAGAAAAGACAAGGGTGCCTTCTACCTTGTCTTTGAATATATGGAGCATGATCTGATGGGACTAGTAGATTCTGGTTTGGTAACATTTACAGAAGAGCACATCAAATCAATGTTTAGACAAATTATGGAAGGGCTGAATTACTGCCACAAGAAGAACTTCCTTCATAGAGATATCAAAGGATCAAATATACTGATGAATAATAAGGGTGAAGTGAAGCTTGCTGATTTCGGACTTGCAAGATTATTTGAGAAAGAAAATGAAGGGCGACCATACACGAATCGTGTTATCACACTTTGGTACAGACCGCCAGAGCTTCTTTTGGGAGAAGAAAGATACGACCCATCAGTAGATGTATGGAGCTGTGGCTGTATACTTGGTGAGTTATTTCGACGAAAACCACTGTTTCAAGCTAACCAAGAAATGCAGCAATTAGAGCTGATAAGTAAGATCTGCGGGAGTCCAACACCAGCTATCTGGCCGGCTGTAATCTGCCTGCCGTTATTTCACACATTCAAACCAAAGAAACAGTTCAAGAGAAGACTGCGAGAAGAATATTACGAATTACCAAAGTATGCATTGGATTTATTGGACCAAATGCTAACAATGGATCCTTCCAGACGGATAAGTTCAGAGGGAGCCCTGGCACATCCCTTTCTGGCTGATGTAAAACCTGACAATATCAGTATATCTGGACTTCCTGATTTCCAAGACTGTCACGAAATGTGGTGTAAAGAGCGAAAAAGGCAAGCACGTCAAAGTGAGCATGCGCAAATACACAGCGATTCATCGCATCAGACAACACAAAATCAAAGTTCAACATTACCACCCCCACCCCCTTTACCCGATCTGGTACCTGCAGAAAAGGACAAGGGGTACGGATCAAATACTCAGCCCCCATTTCCTTCTGGGATGGGGGCAGGATTCATGACTGGATCCTTTATCGGCTCAACAAAAGGACCAATTTCACAAGTGAAACCGACGACTTACGAACAAATAAACAAAGCAGTACCCCCTGCTCAAGATTTAGGAGTATCGAGCAATTTCATGCCTTCTGTTAATTTTCAAACAGGACAGACTTATCAGCAGACGGGGGGTTTCATGGCAGGCGCACCGACCAACTATTCTGCTTATTCATCTAATGAGAAAATGGGGAATAATAATTACAATTCGAAAGGAGGTGCCCGCGTGGATAATAAACCAGATACAAACAATTCGAAAATGTCGCAATACCATGGCAGCAGCCAATCAAATACGACAAATAAACCATCGCAAACATTTTACGAACAATTATCGCCAGCTACCGATCCAGAACGAAGGCAGCAAGTCAAGACATTGAACTATAGTTACAAATCATTGAAAGATCAAAGTAAAGTCTCAGAGAAAGATTCAGCGTATAGGGACGTTGCTGGTGCGAGACATCATTCGCAAAATCTTGCGAACCAAGGAACACAAGTTACGACAAAGCGATAGCATGTTCATTGAATTGGAAATTTCATTGGAAATTTCATTACGAAACAAGTTGCGAAGAAGCTACAGCACATTTTTTCTGAATTGACCAGAACGAAATTTGGTATCTTCACGTTGGATTTGTTCGCTTCTTAAAGTGTAAAGTATTTAGTACTTTTTTGAATAGCCGTTAGAAATATTATAAATCATTTTTTGTTTCTGTGTTGCAACCTTGGGAGGGAGGAGGATTCGTTTATGTTTTTGATAACAAACAATGGGGACGCAA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00069 all species →	Pkinase	Protein kinase domain	Domain	Interproscan
PF12330 all species →	Haspin_kinase	Haspin like kinase domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011009 all species →	Homologous_superfamily	Protein kinase-like domain superfamily	Interproscan
IPR000719 all species →	Domain	Protein kinase domain	Interproscan
IPR050108 all species →	Family	Cyclin-dependent kinase	Interproscan
IPR008271 all species →	Active_site	Serine/threonine-protein kinase, active site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24056 all species →	CELL DIVISION PROTEIN KINASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004672 all species →	Molecular Function	protein kinase activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0006468 all species →	Biological Process	protein phosphorylation	Interproscan
GO:0000307 all species →	Cellular Component	cyclin-dependent protein kinase holoenzyme complex	Interproscan
GO:0004674 all species →	Molecular Function	protein serine/threonine kinase activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0008024 all species →	Cellular Component	cyclin/CDK positive transcription elongation factor complex	Interproscan
GO:0008353 all species →	Molecular Function	RNA polymerase II CTD heptapeptide repeat kinase activity	Interproscan
GO:0030332 all species →	Molecular Function	cyclin binding	Interproscan
GO:0032968 all species →	Biological Process	positive regulation of transcription elongation by RNA polymerase II	Interproscan
GO:0070816 all species →	Biological Process	obsolete phosphorylation of RNA polymerase II C-terminal domain	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K08819	CDK12_13; cyclin-dependent kinase 12/13	EC:2.7.11.22 EC:2.7.11.23	Protein kinases	ko01001	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.