Gene detail

Detailed information of scaffold4.g23.t1 in Aurelia aurita complex sp. Pacific

Genomic Location: scaffold4:217519...232864
NR annotation: no NCBI-NR hit recorded
Species Aurelia aurita complex sp. Pacific · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

scaffold4.g23.t1

gtatttagaaaaggaacttttgtgtggatgaaaccactccctgagtagtcggccatattggattgacggaagagagaggcacggcagcgtattttcaacgcgaagtacaaccaacttacgcctcaattatcctatatcttatgaacattcaattcgtcaaagctacaagcatcaaaaagaaaccctaattgctgtatcagtggcttcggttggtagattcgcctgttttggtgtattctgttcgtctggcgtcgacgacttgatcaagttgaagcaaggcggaaagaaaggacagctgctttagtcgtgcgtgtagcaaaatgagcgaattggaacagctaaggcaagaagctgaagccttgaaaggccaaatcagggatgcaaggaaagctgctgcagataccaatttccttcaggtgacacaaaatgttgaacctgttggaaggattcagatgcgcacaagaaggactcttagaggtcatcttgccaagatttatgccatgcactgggcatgtgattcaaggagtttagtcagtgcttctcaagatggcaaattgattgtttgggattcttacacaacaaataaggtccatgccattccactgcgttcaagttgggtaatgacctgtgcttatgctccttctggtaactttgttgcttgtggtggtctcgacaatatctgctcaatatatagtttgaaaaccagagaaggaaatgtcagagttagcagagagttgcctggacacacaggatatctctcgtgctgccgatttttagatgacagtcaaattttaacaagttctggagatacaacttgctcattgtgggacatagaaacaggacagcaattgacatctttccttggacacactggtgatgtgatgagtctatcactttgcaatgatggaggaaggacctttgtttcaggagcatgtgatgcatcagctaaggtttgggatatccgtgatggaatgtgcaagcagacatttactggccatgagtctgatatcaatgccgtcgcgtattttccaaatggaatggcctttggaactggctctgatgatgcaacatgccgcttgtttgatattagatctgaccaggaactctgtgtttattcacatgacaatatcatttgcggaatcacatcagttgccttctcaaagagtggccgtttgcttcttgctggttatgatgatttcaactgtaatgtatgggatacattgaaaggagaccgcgctggagtccttgcgggtcacgataacagagtcagttgccttggagttacagatgatgggatggccgttgccactggtagctgggatagtttcttgcgtatttggaattaagtgaaaaactttgagactatcaaaaagacaccaaattcaaacaaacaaacaaaacaaacaaagtggaaatgaatcatggcacacttgattttaagtgctttgttaatatggaagcagacaggccgactaaagtgtgatttgactagcaaaacacgttgtaatacactgtacgttctattactattctgctctaatagctggtgcaatattgaattgaattggtaagtatatgcgggctgactgagttgacttactgacttgcgggagggataagctttccacagctcttaaactcttcctgcatcaaattcgtttgttcattgtcaattagagagaactcactaactagcttactataatatactgtttagaatttgttgtttaatgtactgttgaagctttgcatggctaatggaatgtgaacatgtgatcaacatgtgatcaactttgggatttcacgtgactagtatacatttatcatgtgatcaatacagacgcttcatgatatcagtccaaagcaagcacctcagcttcgccaaattaatcgtgaagctggagaaatcacgtgttcctttagagttgatttcgaagatatgatgggatgcatttaggaacgaagaaattcgtttttaacgcaagttatccattgtcataatactaaattacggcatcgtatagaaagacattcgggggctcttggcagtggcagtttggtcttctctgttttacccccatagccttccttcctgttggaagtaaacagcagagttccgttctctgattatttgtctgtggtccatgctgacaggttgcagagctcctcagcgcttgtgcttaatttgaagcaattagcagaacaagtttatagttaatttgggagaaaaactgtctttgaatccttcgaattttatgcttgaaaataaagtacagtttaataaagtaaactggtgaga

Transcript

scaffold4.g23.t1

GTATTTAGAAAAGGAACTTTTGTGTGGATGAAACCACTCCCTGAGTAGTCGGCCATATTGGATTGACGGAAGAGAGAGGCACGGCAGCGTATTTTCAACGCGAAGTACAACCAACTTACGCCTCAATTATCCTATATCTTATGAACATTCAATTCGTCAAAGCTACAAGCATCAAAAAGAAACCCTAATTGCTGTATCAGTGGCTTCGGTTGGTAGATTCGCCTGTTTTGGTGTATTCTGTTCGTCTGGCGTCGACGACTTGATCAAGTTGAAGCAAGGCGGAAAGAAAGGACAGCTGCTTTAGTCGTGCGTGTAGCAAAATGAGCGAATTGGAACAGCTAAGGCAAGAAGCTGAAGCCTTGAAAGGCCAAATCAGGGATGCAAGGAAAGCTGCTGCAGATACCAATTTCCTTCAGGTGACACAAAATGTTGAACCTGTTGGAAGGATTCAGATGCGCACAAGAAGGACTCTTAGAGGTCATCTTGCCAAGATTTATGCCATGCACTGGGCATGTGATTCAAGGAGTTTAGTCAGTGCTTCTCAAGATGGCAAATTGATTGTTTGGGATTCTTACACAACAAATAAGGTCCATGCCATTCCACTGCGTTCAAGTTGGGTAATGACCTGTGCTTATGCTCCTTCTGGTAACTTTGTTGCTTGTGGTGGTCTCGACAATATCTGCTCAATATATAGTTTGAAAACCAGAGAAGGAAATGTCAGAGTTAGCAGAGAGTTGCCTGGACACACAGGATATCTCTCGTGCTGCCGATTTTTAGATGACAGTCAAATTTTAACAAGTTCTGGAGATACAACTTGCTCATTGTGGGACATAGAAACAGGACAGCAATTGACATCTTTCCTTGGACACACTGGTGATGTGATGAGTCTATCACTTTGCAATGATGGAGGAAGGACCTTTGTTTCAGGAGCATGTGATGCATCAGCTAAGGTTTGGGATATCCGTGATGGAATGTGCAAGCAGACATTTACTGGCCATGAGTCTGATATCAATGCCGTCGCGTATTTTCCAAATGGAATGGCCTTTGGAACTGGCTCTGATGATGCAACATGCCGCTTGTTTGATATTAGATCTGACCAGGAACTCTGTGTTTATTCACATGACAATATCATTTGCGGAATCACATCAGTTGCCTTCTCAAAGAGTGGCCGTTTGCTTCTTGCTGGTTATGATGATTTCAACTGTAATGTATGGGATACATTGAAAGGAGACCGCGCTGGAGTCCTTGCGGGTCACGATAACAGAGTCAGTTGCCTTGGAGTTACAGATGATGGGATGGCCGTTGCCACTGGTAGCTGGGATAGTTTCTTGCGTATTTGGAATTAAGTGAAAAACTTTGAGACTATCAAAAAGACACCAAATTcaaacaaacaaacaaaacaaacaaaGTGGAAATGAATCATGGCACACTTGATTTTAAGTGCTTTGTTAATATGGAAGCAGACAGGCCGACTAAAGTGTGATTTGACTAGCAAAACACGTTGTAATACACTGTACGTTCTATTACTATTCTGCTCTAATAGCTGGTGCAATATTGAATTGAATTGGTAAGTATATGCGGGCTGACTGAGTTGACTTACTGACTTGCGGGAGGGATAAGCTTTCCACAGCTCTTAAACTCTTCCTGCATCAAATTCGTTTGTTCATTGTCAATTAGAGAGAACTCACTAACTAGCTTACTATAATATACTGTTTAGAATTTGTTGTTTAATGTACTGTTGAAGCTTTGCATGGCTAATGGAATGTGAACATGTGATCAACATGTGATCAACTTTGGGATTTCACGTGACTAGTATACATTTATCATGTGATCAATACAGACGCTTCATGATATCAGTCCAAAGCAAGCACCTCAGCTTCGCCAAATTAATCGTGAAGCTGGAGAAATCACGTGTTCCTTTAGAGTTGATTTCGAAGATATGATGGGATGCATTTAGGAACGAAGAAATTCGTTTTTAACGCAAGTTATCCATTGTCATAATACTAAATTACGGCATCGTATAGAAAGACATTCGGGGGCTCTTGGCAGTGGCAGTTTGGTCTTCTCTGTTTTACCCCCATAGCCTTCCTTCCTGTTGGAAGTAAACAGCAGAGTTCCGTTCTCTGATTATTTGTCTGTGGTCCATGCTGACAGGTTGCAGAGCTCCTCAGCGCTTGTGCTTAATTTGAAGCAATTAGCAGAACAAGTTTATAGTTAATTTGGGAGAAAAACTGTCTTTGAATCCTTCGAATTTTATGCTTGAAAATAAAGTACAGTTTAATAAAGTAAACTGGTGAGA

Protein

Gene family

Family type	Membership / link
Ubiquitin family	E3\|E3 adaptor Cullin RING\|CDC20 · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|DWD · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00400 all species →	WD40	WD domain, G-beta repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR016346 all species →	Family	Guanine nucleotide-binding protein, beta subunit	Interproscan
IPR001632 all species →	Domain	G-protein, beta subunit	Interproscan
IPR001680 all species →	Repeat	WD40 repeat	Interproscan
IPR020472 all species →	Repeat	G-protein beta WD-40 repeat	Interproscan
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR019775 all species →	Conserved_site	WD40 repeat, conserved site	Interproscan
IPR036322 all species →	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR19850 all species →	GUANINE NUCLEOTIDE-BINDING PROTEIN BETA G PROTEIN BETA	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0005834 all species →	Cellular Component	heterotrimeric G-protein complex	Interproscan
GO:0007165 all species →	Biological Process	signal transduction	Interproscan
GO:0007186 all species →	Biological Process	G protein-coupled receptor signaling pathway	Interproscan
GO:0030159 all species →	Molecular Function	signaling receptor complex adaptor activity	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for scaffold4.g23.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.