Gene detail

Detailed information of scaffold40.g149.t2 in Aurelia aurita

Genomic Location: scaffold40:1797940...1810385
NR annotation: no NCBI-NR hit recorded
Species Aurelia aurita · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

scaffold40.g149.t2

tgccccctccaagaaacatcttcctgcgttacaattacatgattgcaactcacatgacttttgatattctaatgaatgtcttgatcacgttaaacatggtcgctatcattgtcgagttcacggttcctgacactggctcgttatttatttatttgaaatacatcaattatgtttattttaatatcttcgtgctagaagctatcatcaagcttttgggattcagaaaacattacttcaaagattattggaatttgatggatatgttcatcgtgtttttgagtgctgttgatattgtactggatatagtcgctgctggctcaatgggaggattttcaccaggcgttctcaaagttgccaagattttcagggttttgagaatgggtcgtgttctcaaacttatcaagactttgattccaaaactaatcgatctggttaacgaccgtataaacagacagttgagttttggatatgacattggaaaaggttttgtcgttgcggaggaggaagttatgaaaatggtagatcaactcgttattgatcagaaaataatgaaagatttgaaaatgagatctgagaaaaatcgacttaatattattcgtagtctgggcatgctccaacgagaacatcctggcattgcgatttctgtaaaaacaagacaagcaactcgctctgttctcaacaattctttagagacgcttgcacaacttcgatcaaccggtgtcatggataaaagtgaggtcgatcaactggaaatgcttgtccaagaacgaatgaaacggcaactcaacgcaccatcttacatcgcaccaaagaagccagagagccttttacgtgggttggcatggttacgattgatgccagaagaagttgtcaattacgtgatcgcacaagcagaaatgatatcatatgaatttggtgacgtcatgttacggcaaggagaagccacggatggtatctatctcattgtttccggtatggttaagcttgttggagtatctatcccagatgcccaaacaacaccggaaatatatgtcgacagtgaattgaacatcagtacggactacctgtgttctggtaacgtcattggcgaaatgggattaatgaccggaggtgcgcgccacgcatcggttgtttgtgaaaccgctgtccaggtgtatcacattccagcagaaaggatgtttcaagctctgaatcgtttccctaaactagaaaacagtatttggagaatttgtggaatccgaattgcacttccaatgctcatggaccaagctgcttacaagagtcttcgaaaagatcatttgaaaatgttatgcgaaagcagtacaattgctgaattctcaaaatgcgagactttcgaaataacggatcgaatattagaagcagttcttattcatggcgaagtgatatgtacaatcacaaaggaaatatttttgggaccgtgtcttctgccaaatataagaaaatgtttcaagttctcagcgagaaatttgccgaaaattttggtaatttggaagatgtcacaaacgagaagaaggacctcacttgggccagaagacatcgatctatccgacccacaacgaccttctttcgatgacagtaatataatagacgcatccatcggcaggaagaaaagtgacgaagcaaaaagacgtgcaacaatttgcagtattcttgaatcaattgattacgaaccaagcattacatcgtcaaaatccaacacgggaccgtcgatgaatactacaggtacacaaatgtcttcacatatgctgctcgcaggcaaaacatctcaatctggaggatcaaaacaaatgtcttcgcatattacgctaggaggcaaaaaatctggatcaaaacaaatctcttcacatattccgcttggaggcaaaaaatctcgatctgcagcaaaacacatataaagaattctggtatgaaccttctataaatgtttttgtattatcttagacaagactaaacttgaaagaattga

Transcript

scaffold40.g149.t2

TGCCCCCTCCAAGAAACATCTTCCTGCGTTACAATTACATGATTGCAACTCACATGACTTTTGATATTCTAATGAATGTCTTGATCACGTTAAACATGGTCGCTATCATTGTCGAGTTCACGGTTCCTGACACTGGCTCGTTATTTATTTATTTGAAATACATCAATTATGTTTATTTTAATATCTTCGTGCTAGAAGCTATCATCAAGCTTTTGGGATTCAGAAAACATTACTTCAAAGATTATTGGAATTTGATGGATATGTTCATCGTGTTTTTGAGTGCTGTTGATATTGTACTGGATATAGTCGCTGCTGGCTCAATGGGAGGATTTTCACCAGGCGTTCTCAAAGTTGCCAAGATTTTCAGGGTTTTGAGAATGGGTCGTGTTCTCAAACTTATCAAGACTTTGATTCCAAAACTAATCGATCTGGTTAACGACCGTATAAACAGACAGTTGAGTTTTGGATATGACATTGGAAAAGGTTTTGTCGTTGCGGAGGAGGAAGTTATGAAAATGGTAGATCAACTCGTTATTGATCAGAAAATAATGAAAGATTTGAAAATGAGATCTGAGAAAAATCGACTTAATATTATTCGTAGTCTGGGCATGCTCCAACGAGAACATCCTGGCATTGCGATTTCTGTAAAAACAAGACAAGCAACTCGCTCTGTTCTCAACAATTCTTTAGAGACGCTTGCACAACTTCGATCAACCGGTGTCATGGATAAAAGTGAGGTCGATCAACTGGAAATGCTTGTCCAAGAACGAATGAAACGGCAACTCAACGCACCATCTTACATCGCACCAAAGAAGCCAGAGAGCCTTTTACGTGGGTTGGCATGGTTACGATTGATGCCAGAAGAAGTTGTCAATTACGTGATCGCACAAGCAGAAATGATATCATATGAATTTGGTGACGTCATGTTACGGCAAGGAGAAGCCACGGATGGTATCTATCTCATTGTTTCCGGTATGGTTAAGCTTGTTGGAGTATCTATCCCAGATGCCCAAACAACACCGGAAATATATGTCGACAGTGAATTGAACATCAGTACGGACTACCTGTGTTCTGGTAACGTCATTGGCGAAATGGGATTAATGACCGGAGGTGCGCGCCACGCATCGGTTGTTTGTGAAACCGCTGTCCAGGTGTATCACATTCCAGCAGAAAGGATGTTTCAAGCTCTGAATCGTTTCCCTAAACTAGAAAACAGTATTTGGAGAATTTGTGGAATCCGAATTGCACTTCCAATGCTCATGGACCAAGCTGCTTACAAGAGTCTTCGAAAAGATCATTTGAAAATGTTATGCGAAAGCAGTACAATTGCTGAATTCTCAAAATGCGAGACTTTCGAAATAACGGATCGAATATTAGAAGCAGTTCTTATTCATGGCGAAGTGATATGTACAATCACAAAGGAAATATTTTTGGGACCGTGTCTTCTGCCAAATATAAGAAAATGTTTCAAGTTCTCAGCGAGAAATTTGCCGAAAATTTTGGTAATTTGGAAGATGTCACAAACGAGAAGAAGGACCTCACTTGGGCCAGAAGACATCGATCTATCCGACCCACAACGACCTTCTTTCGATGACAGTAATATAATAGACGCATCCATCGGCAGGAAGAAAAGTGACGAAGCAAAAAGACGTGCAACAATTTGCAGTATTCTTGAATCAATTGATTACGAACCAAGCATTACATCGTCAAAATCCAACACGGGACCGTCGATGAATACTACAGGTACACAAATGTCTTCACATATGCTGCTCGCAGGCAAAACATCTCAATCTGGAGGATCAAAACAAATGTCTTCGCATATTACGCTAGGAGGCAAAAAATCTGGATCAAAACAAATCTCTTCACATATTCCGCTTGGAGGCAAAAAATCTCGATCTGCAGCAAAACACATATAAAGAATTCTGGTATGAACCTTCTATAAATGTTTTTGTATTATCTTAGACAAGACTAAACTTGAAAGAATTGA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00520 all species →	Ion_trans	Ion transport protein	Family	Interproscan
PF00027 all species →	cNMP_binding	Cyclic nucleotide-binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027359 all species →	Homologous_superfamily	Voltage-dependent channel domain superfamily	Interproscan
IPR000595 all species →	Domain	Cyclic nucleotide-binding domain	Interproscan
IPR018490 all species →	Homologous_superfamily	Cyclic nucleotide-binding domain superfamily	Interproscan
IPR005821 all species →	Domain	Ion transport domain	Interproscan
IPR043203 all species →	Family	Voltage-gated cation channel calcium and sodium	Interproscan
IPR014710 all species →	Homologous_superfamily	RmlC-like jelly roll fold	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10037 all species →	VOLTAGE-GATED CATION CHANNEL CALCIUM AND SODIUM	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005216 all species →	Molecular Function	monoatomic ion channel activity	Interproscan
GO:0006811 all species →	Biological Process	monoatomic ion transport	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0055085 all species →	Biological Process	transmembrane transport	Interproscan
GO:0001518 all species →	Cellular Component	voltage-gated sodium channel complex	Interproscan
GO:0005248 all species →	Molecular Function	voltage-gated sodium channel activity	Interproscan
GO:0005261 all species →	Molecular Function	monoatomic cation channel activity	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0086010 all species →	Biological Process	membrane depolarization during action potential	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for scaffold40.g149.t2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.