Gene detail

Detailed information of scaffold40.g72.t2 in Aurelia aurita

Genomic Location: scaffold40:774044...804146
NR annotation: no NCBI-NR hit recorded
Species abbreviation AAURI1 · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

scaffold40.g72.t2

cgtacaagactgttgtaagcaatagattttaactgcacattcttaatccggacatttcgctttagaaaacctaaacttttgttagctttattagtgatgttgttaatatgcgcattccagtcaagctggtttgtcaggggcctgcgtgccacatggcttatgcagacaatttccggacaactcacttcaacttatggttcaatccggggcgaaaggttcttcagtcaactgcatgcagatatctagtttacttgggcaaattgagttagaaggacgcagacccccgttgatgttatcaggtcgttcattgccgtcgttcgttgcgtatgataccagcccaagagcagggggttttgtcgatggcagatttttgactgggataagaccgcaggaatattttttccattgtatggctgggagagagggcctggtagatacagctgtaaagaccagcagatctggttatctgcaacgatgtctgatcaaacacttagaaggccttatggtgcaatatgatttgagtgtgagggacagtgatggatctgttgtgcaatttctttatggtgatgatggtgtggatctgtatggtggccaaacatctggaaaattattgtctgctcttgcaagattgtttacaaatttcttgcgcgttcatggcttcagtttgggtgttgaggatatcctagtcactccaaaagctaactctagacgatcaaaattaatcgacgcaggaaggctttgtggaaacgaggctgctgcatctgcgcttggtctacctgaggactgccaaggcgaggagctgttcgagaggttacagaaagcacaacattcaaatcaaggtgtggacttaaagcagctagacttggctatgaagaaacagactgacctttataataataagatcaattcggcctgtgtgccacatggcttatgcagacaatttccggacaactcacttcaacttatggtacaatctggagcgaagggctcttcagtcaactgcatgcagatatctagtttacttgggcagattgaattagaaggacgcagacccccattgatgttatcaggtcgttcattgccatcgttcgttgcttatgataccagtccaagagcagggggttttgtcgatggcagatttttgactgggataagaccgcaggaatattttttccattgtatggctgggagagagggcctagtagatacagctgtaaagaccagcagatctggttatctgcaacgatgtctgatcaaacacttagaaggccttatggtgcaatatgatttgagtgtgagggacagtgatggatctgttgtgcaatttctttatggtgatgatggtgtggatgttttaaaagcacagttcttggaagagaaacaatttcaattcattgctaggaatcacacgggctacatgcgtcagcttaagccacaccgcgcaatgaaagttctggatttaaaggaagcaactaaaaaagaaaaaaggataaagaaatggaaagcaaagtatggaaaacctacatcatcaaaattatcccacacgaaacgctctccttatttgctctttgaaagagaccacggtgacacattcaaatcaaagtatccggacaaagatctgaaaaatggacgaacaaaggcttccgaagagctcttcaagatttggaggaagctgagtggacaggtgaagcacagttatgaatcaaattgtatgccatgcccggatccggttgtttcagtgctgagtccagacaggtatttgggatctgtatcggaagcatttctggcgaaagtctttgactatgcatctttgaacccagatggactccttggggatgataatgcaagtaaagtactaaaaagcaaccagttctcacccttgatgacgtttaagtattcaagggcattggtagagccgggtgaagctgtcggtcttctagcgggacagtcgattggtgaaccatccactcagatgaccttgaatacctttcattttgctggccgtggtgaaatgaacgtcactttgggaataccccgactcagggaggtccttatgactgccagtagcaatattaaaacaccaacgatggatgtgcttgtcaaagagggatctgtgcctttgaaaaaagctgaaaaattgcagaaacaactcaatagagtgaccctttcaaatgttatcgaaaagatggaggtattcgaaactctaaaagccgggcaaataagtagtggccgtcgaagatgtagacagttcaaaattaggatggaatttttgcataggtctgtttacaaggatgaatacactacgaccccaaaagatatcctgctctatgttgagcaggcgtttgtgcggaggatattggctgccgtcaagaaattgtgcaaaatcaaaacaggcgaaaagcaagtgaagacattggatgagaaacaacccaatgtttctaatgaagaagctgaaggtggcgatcaagatgctttcatggctgaggacgaaaatgacgatattgctgatatttctgatgatgaattggttggagacggagatgcagcggatagtaagaacaagagcagacagatgcagtttacatcgtatgaagagcctgatgaagatgaacaaacgcaagatgaggatgaaggtgattcagatgatgaagacttagctcaaaaacaaaagggagaaatgactgaaagtgttatggacgacatagaaatagtggacgatcaacaacccatttcatctgctgcagaagaagctaataacgaggaaagagacacgagaataacgagtgttgtcaacattcctagtatcgttgaatacaaatatgatgtgaagaaaaatttatggtgtgaagtatcaatgcagtttccagtaactggttcgaagatcatgttactctcgctcattgagaagcttgcagaaaaggccgtcgtaaacgaagcccccggaatcaaacgagcattcttctcagaaagcagtgacagaggtgaagaaggaagacacagaatcaaaacagaaggtgttagcattattgaactgtggcaatatcctgaaattctcgagttgaaaaacttatattccaatgatattcatgccatggcaaggacatatggtatcgaggctgctagacaaatcatcatcaaagaaatcacgaacgtcttcaaagtatatggtattcagattgatcgtcgccatctttctttggttggtgattacatgacatttgaaggtagctacaagccattcaacagacaaggtattgaaagtaatccataccctctacaaaaaatgacatttgaaacaaccacgcacttcttacgcgaggcatctgcgtttggtcgtgtagatacgttggactcgccttcttcgcggatagttgtagggcgtgttgtcaaagcagggactggaatatttgacttaagacaacctcttaaatggtaattctcatgtaatggagatttttatagatttcaatcagagttgggtatttggtacttgtacgtcttacattctttcagagctactgctagttgagttaaacaaattgtcggcgtttttgtcgaggtttacgattgttttcaaccaccggatgagtcagaaaaaacttggggcgtttaa

Transcript

scaffold40.g72.t2

CGTACAAGACTGTTGTAAGCAATAGATTTTAACTGCACATTCTTAATCCGGACATTTCGCTTTAGAAAACCTAAACTTTTGTTAGCTTTATTAGTGATGTTGTTAATATGCGCATTCCAGTCAAGCTGGTTTGTCAGGGGCCTGCGTGCCACATGGCTTATGCAGACAATTTCCGGACAACTCACTTCAACTTATGGTTCAATCCGGGGCGAAAGGTTCTTCAGTCAACTGCATGCAGATATCTAGTTTACTTGGGCAAATTGAGTTAGAAGGACGCAGACCCCCGTTGATGTTATCAGGTCGTTCATTGCCGTCGTTCGTTGCGTATGATACCAGCCCAAGAGCAGGGGGTTTTGTCGATGGCAGATTTTTGACTGGGATAAGACCGCAGGAATATTTTTTCCATTGTATGGCTGGGAGAGAGGGCCTGGTAGATACAGCTGTAAAGACCAGCAGATCTGGTTATCTGCAACGATGTCTGATCAAACACTTAGAAGGCCTTATGGTGCAATATGATTTGAGTGTGAGGGACAGTGATGGATCTGTTGTGCAATTTCTTTATGGTGATGATGGTGTGGATCTGTATGGTGGCCAAACATCTGGAAAATTATTGTCTGCTCTTGCAAGATTGTTTACAAATTTCTTGCGCGTTCATGGCTTCAGTTTGGGTGTTGAGGATATCCTAGTCACTCCAAAAGCTAACTCTAGACGATCAAAATTAATCGACGCAGGAAGGCTTTGTGGAAACGAGGCTGCTGCATCTGCGCTTGGTCTACCTGAGGACTGCCAAGGCGAGGAGCTGTTCGAGAGGTTACAGAAAGCACAACATTCAAATCAAGGTGTGGACTTAAAGCAGCTAGACTTGGCTATGAAGAAACAGACTGACCTTTATAATAATAAGATCAATTCGGCCTGTGTGCCACATGGCTTATGCAGACAATTTCCGGACAACTCACTTCAACTTATGGTACAATCTGGAGCGAAGGGCTCTTCAGTCAACTGCATGCAGATATCTAGTTTACTTGGGCAGATTGAATTAGAAGGACGCAGACCCCCATTGATGTTATCAGGTCGTTCATTGCCATCGTTCGTTGCTTATGATACCAGTCCAAGAGCAGGGGGTTTTGTCGATGGCAGATTTTTGACTGGGATAAGACCGCAGGAATATTTTTTCCATTGTATGGCTGGGAGAGAGGGCCTAGTAGATACAGCTGTAAAGACCAGCAGATCTGGTTATCTGCAACGATGTCTGATCAAACACTTAGAAGGCCTTATGGTGCAATATGATTTGAGTGTGAGGGACAGTGATGGATCTGTTGTGCAATTTCTTTATGGTGATGATGGTGTGGATGTTTTAAAAGCACAGTTCTTGGAAGAGAAACAATTTCAATTCATTGCTAGGAATCACACGGGCTACATGCGTCAGCTTAAGCCACACCGCGCAATGAAAGTTCTGGATTTAAAGGAAGCAACTAAAAAAGAAAAAAGGATAAAGAAATGGAAAGCAAAGTATGGAAAACCTACATCATCAAAATTATCCCACACGAAACGCTCTCCTTATTTGCTCTTTGAAAGAGACCACGGTGACACATTCAAATCAAAGTATCCGGACAAAGATCTGAAAAATGGACGAACAAAGGCTTCCGAAGAGCTCTTCAAGATTTGGAGGAAGCTGAGTGGACAGGTGAAGCACAGTTATGAATCAAATTGTATGCCATGCCCGGATCCGGTTGTTTCAGTGCTGAGTCCAGACAGGTATTTGGGATCTGTATCGGAAGCATTTCTGGCGAAAGTCTTTGACTATGCATCTTTGAACCCAGATGGACTCCTTGGGGATGATAATGCAAGTAAAGTACTAAAAAGCAACCAGTTCTCACCCTTGATGACGTTTAAGTATTCAAGGGCATTGGTAGAGCCGGGTGAAGCTGTCGGTCTTCTAGCGGGACAGTCGATTGGTGAACCATCCACTCAGATGACCTTGAATACCTTTCATTTTGCTGGCCGTGGTGAAATGAACGTCACTTTGGGAATACCCCGACTCAGGGAGGTCCTTATGACTGCCAGTAGCAATATTAAAACACCAACGATGGATGTGCTTGTCAAAGAGGGATCTGTGCCTTTGAAAAAAGCTGAAAAATTGCAGAAACAACTCAATAGAGTGACCCTTTCAAATGTTATCGAAAAGATGGAGGTATTCGAAACTCTAAAAGCCGGGCAAATAAGTAGTGGCCGTCGAAGATGTAGACAGTTCAAAATTAGGATGGAATTTTTGCATAGGTCTGTTTACAAGGATGAATACACTACGACCCCAAAAGATATCCTGCTCTATGTTGAGCAGGCGTTTGTGCGGAGGATATTGGCTGCCGTCAAGAAATTGTGCAAAATCAAAACAGGCGAAAAGCAAGTGAAGACATTGGATGAGAAACAACCCAATGTTTCTAATGAAGAAGCTGAAGGTGGCGATCAAGATGCTTTCATGGCTGAGGACGAAAATGACGATATTGCTGATATTTCTGATGATGAATTGGTTGGAGACGGAGATGCAGCGGATAGTAAGAACAAGAGCAGACAGATGCAGTTTACATCGTatgaagagcctgatgaagatgaacaaacgcaagatgaggatgaagGTGATTCAGATGATGAAGACTTAGCTCAAAAACAAAAGGGAGAAATGACTGAAAGTGTTATGGACGACATAGAAATAGTGGACGATCAACAACCCATTTCATCTGCTGCAGAAGAAGCTAATAACGAGGAAAGAGACACGAGAATAACGAGTGTTGTCAACATTCCTAGTATCGTTGAATACAAATATGATGTGAAGAAAAATTTATGGTGTGAAGTATCAATGCAGTTTCCAGTAACTGGTTCGAAGATCATGTTACTCTCGCTCATTGAGAAGCTTGCAGAAAAGGCCGTCGTAAACGAAGCCCCCGGAATCAAACGAGCATTCTTCTCAGAAAGCAGTGACAGAGGTGAAGAAGGAAGACACAGAATCAAAACAGAAGGTGTTAGCATTATTGAACTGTGGCAATATCCTGAAATTCTCGAGTTGAAAAACTTATATTCCAATGATATTCATGCCATGGCAAGGACATATGGTATCGAGGCTGCTAGACAAATCATCATCAAAGAAATCACGAACGTCTTCAAAGTATATGGTATTCAGATTGATCGTCGCCATCTTTCTTTGGTTGGTGATTACATGACATTTGAAGGTAGCTACAAGCCATTCAACAGACAAGGTATTGAAAGTAATCCATACCCTCTACAAAAAATGACATTTGAAACAACCACGCACTTCTTACGCGAGGCATCTGCGTTTGGTCGTGTAGATACGTTGGACTCGCCTTCTTCGCGGATAGTTGTAGGGCGTGTTGTCAAAGCAGGGACTGGAATATTTGACTTAAGACAACCTCTTAAATGGTAATTCTCATGTAATGGAGATTTTTATAGATTTCAATCAGAGTTGGGTATTTGGTACTTGTACGTCTTACATTCTTTCAGAGCTACTGCTAGTTGAGTTAAACAAATTGTCGGCGTTTTTGTCGAGGTTTACGATTGTTTTCAACCaccggatgagtcagaaaaaacttggggcgtttaa

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04998 all species →	RNA_pol_Rpb1_5	RNA polymerase Rpb1, domain 5	Domain	Interproscan
PF05000 all species →	RNA_pol_Rpb1_4	RNA polymerase Rpb1, domain 4	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR045867 all species →	Family	DNA-directed RNA polymerase, subunit beta-prime	Interproscan
IPR007081 all species →	Domain	RNA polymerase Rpb1, domain 5	Interproscan
IPR038120 all species →	Homologous_superfamily	RNA polymerase Rpb1, funnel domain superfamily	Interproscan
IPR007083 all species →	Domain	RNA polymerase Rpb1, domain 4	Interproscan
IPR047107 all species →	Domain	DNA-directed RNA pol I, largest subunit, C-terminal domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR19376 all species →	DNA-DIRECTED RNA POLYMERASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0001054 all species →	Molecular Function	RNA polymerase I activity	Interproscan
GO:0003899 all species →	Molecular Function	DNA-directed 5'-3' RNA polymerase activity	Interproscan
GO:0005736 all species →	Cellular Component	RNA polymerase I complex	Interproscan
GO:0006351 all species →	Biological Process	DNA-templated transcription	Interproscan
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for scaffold40.g72.t2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.