Gene detail

Detailed information of scaffold403.g7.t1 in Aurelia aurita complex sp. Pacific

Genomic Location: scaffold403:173468...192064
NR annotation: no NCBI-NR hit recorded
Species Aurelia aurita complex sp. Pacific · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

scaffold403.g7.t1

ctcgttcacaaacaagaaatcaacaggacggcctaatctgagccacgtcgaggcaaactgcaatcaaaatgtctgattttaaaccaccagaaaagtatctttctggctttggaagtgaatttgcatcggaagctctgcctgacgctcttccgaaaggacagaattcaccgcagaaatgcccatatggtctatatgcagaacagttatctggctcagccttcactgcaccaagaagtactaacagaaggagctggctgtacagaatcaagccttcagtgcaacataaaccctttgaaactttcaaagtgaaaaatgtgactgatgattggaaaaacagaacaccaaatcctaatcagctgagatggaaaccatttgatattccttcaaatccaacagactttgttgaaggtctgtcaactgtttgtggagctggtgacccaagaatgaggagtggactttcaattatggtttatacatgcaatacagaaatgaaaaacagagcttttcaaaatgcagatggagacttcttgatagttccacaacaaggtgtccttggaataacaacagaatttggaagaatgacagtggaacccaatgagatttgtgtgatccagcaaggaatgcgcttttcagttcatgtacaaggaccaagcagaggatatcttcttgaagtctacgatggtcattttgagttgccttaccttggaccgattggtgcaaatggtttagcaaatccacgagattttctaacgccagttgcaagttttgaagaaaaactgcccgaaaatggatacgaaataatgaacaaataccaaggacatttattcaaagctatgcaggatcattctccattcgacgttgtggcctggcatggaaattatgttccatataaatacaacctgaaacatttcaatgtcataaacacagtctctttcgatcattgtgatccttcgatcttcaccgttctgacatgtcaaagcaacacacctggggttgcaatcgctgactttgttatcttcccacctcgttggggtgttgctgaccacacgttcaggccaccatattatcatagaaattgcatgagcgaattcatgggactaattcttggaaaatatgaagcaaaggaagaaggctttcaacctggaggtgcaacattacacagtatgatgaccccacatggtcctgatgcagaatgttttgaaaaagcatcgaatgcaaaattggagccacaaagagttgctgatggaacacaggcgttcatgtttgaaacatgtcttggtctatctttgactgaatggggagaaaagacttgccagaaagtggatgctgattatcataaatgttggcagccattgaaaagtaatttcaatccaaattggaagcttggagatgacgagagccagagtaagacacaaatgtcattttcgatttgaatcaaatgtagaacatagtcgtgtaaatgtagaatcgatctgctggttggtatttatagatgcatgttgtaattgcgttatgtaagctatctccggcggcaaattatggtccaagacaagtttattcctgacaataatctatccagggatgcaaacatttctactttacccaattgacaggggacgtaacatagaacgtagaaaacgaaatatttcgtcggaaagtcactgttgccgccatgttgctgtatttgctggcatttagctttcatctttttatttcttgagtggaccaagaaaagaatgatatcttcttgagacccgaccgacaaagcataatgtacagattgttacagaaacaaccaactaccgtagatatttctgctgccagcttttgcattagtcccccctccccccccccaatacaggttaatttgcacgcaagatgttctctgatatcatgcagtcatgtagtaatgtttcaaaatgagttaaaatggtcattgtgaatagaccttttagcttttctacaaaagagcctggatccagtgacgcatttacccatgggcccactgggcccgggcccaggggccccctaaaattcttatatctagggggccccgagtaaaatttgagaaaacctatgaagtgctgttaatttcactcttgtgtttgaattgagtgctaacgtcttcagacaacaccatggttcatgttttcatacattaacaaagttcctcgataaaaggaggaatctcgttgataccgaagcccaagtccatagaaaaaagaaagaactcgaagaggcgacaaccccaggaaacacgaacgcctatttcggattatctactgtgttagagcaaattgtgaaaggagatgaagctgcaacttcccaaatgcaataagggcacttagattgttgctcagtgcaatgaccgcactttgccatgcagagtttcctctagtgaaagaagtttctccatgctgacagggtcaagagtcaactgaggtccacaatgtcacaagagcgcgttgttgttgccttgtgcctaataaatggcagcaaattttgatgtcctgaggcagtggcgtagccactgggggggcgggggtatgaggggcaattgtccccacttctgtccaaagatggtccttgagatttctttaaaacagaagagaaagtagctgggtataggttgggaaagaactttccgagaaatgtcagatcttcaattttagcactggcaagcatggaatatggaatcagtgagtgcattctaagccaaagtaaaggatgtttcttcaaaattcgtccccgtgctccgattcgtaggataaccgtcacaaaatatcaaagtttccttgtcgctaatggcaagcataatgtgcggagatgcattctaagccaaagtaaagggcgtggccccaaaaattttccgggggctttgcttccctccccacttaatttaccctggacaaggacaagggtagttttcttgagagtgcaccgaaatgtatatattgtagtcattttttcgagtttccactgtcaaactgttttgttgatattatcgtgtttggctacgactgaatctggcggccatacatgctagcagagcaccgagtactatgatgcaaattttttttaggtatattctaaggggccccaaatagttttgggcccagggccccaacagacttaaatgcggccctgcctggatcgagcgttattttcatacatttttattcgcgaggttcgatcgagtggcgttagagcttctatcactattgtgcacattcaaaaattctacaaaatgtagcaaaatatcgttcgattctgattcttttcagaatagctaaaaggtccattgttgtttggttggcttcttttctttgtttcttgttgtttgtagtttctggaaaatgttgctgtgtttttagaattaaagaaatagattatttatca

Transcript

scaffold403.g7.t1

CTCGTTCACAAACAAGAAATCAACAGGACGGCCTAATCTGAGCCACGTCGAGGCAAACTGCAATCAAAATGTCTGATTTTAAACCACCAGAAAAGTATCTTTCTGGCTTTGGAAGTGAATTTGCATCGGAAGCTCTGCCTGACGCTCTTCCGAAAGGACAGAATTCACCGCAGAAATGCCCATATGGTCTATATGCAGAACAGTTATCTGGCTCAGCCTTCACTGCACCAAGAAGTACTAACAGAAGGAGCTGGCTGTACAGAATCAAGCCTTCAGTGCAACATAAACCCTTTGAAACTTTCAAAGTGAAAAATGTGACTGATGATTGGAAAAACAGAACACCAAATCCTAATCAGCTGAGATGGAAACCATTTGATATTCCTTCAAATCCAACAGACTTTGTTGAAGGTCTGTCAACTGTTTGTGGAGCTGGTGACCCAAGAATGAGGAGTGGACTTTCAATTATGGTTTATACATGCAATACAGAAATGAAAAACAGAGCTTTTCAAAATGCAGATGGAGACTTCTTGATAGTTCCACAACAAGGTGTCCTTGGAATAACAACAGAATTTGGAAGAATGACAGTGGAACCCAATGAGATTTGTGTGATCCAGCAAGGAATGCGCTTTTCAGTTCATGTACAAGGACCAAGCAGAGGATATCTTCTTGAAGTCTACGATGGTCATTTTGAGTTGCCTTACCTTGGACCGATTGGTGCAAATGGTTTAGCAAATCCACGAGATTTTCTAACGCCAGTTGCAAGTTTTGAAGAAAAACTGCCCGAAAATGGATACGAAATAATGAACAAATACCAAGGACATTTATTCAAAGCTATGCAGGATCATTCTCCATTCGACGTTGTGGCCTGGCATGGAAATTATGTTCCATATAAATACAACCTGAAACATTTCAATGTCATAAACACAGTCTCTTTCGATCATTGTGATCCTTCGATCTTCACCGTTCTGACATGTCAAAGCAACACACCTGGGGTTGCAATCGCTGACTTTGTTATCTTCCCACCTCGTTGGGGTGTTGCTGACCACACGTTCAGGCCACCATATTATCATAGAAATTGCATGAGCGAATTCATGGGACTAATTCTTGGAAAATATGAAGCAAAGGAAGAAGGCTTTCAACCTGGAGGTGCAACATTACACAGTATGATGACCCCACATGGTCCTGATGCAGAATGTTTTGAAAAAGCATCGAATGCAAAATTGGAGCCACAAAGAGTTGCTGATGGAACACAGGCGTTCATGTTTGAAACATGTCTTGGTCTATCTTTGACTGAATGGGGAGAAAAGACTTGCCAGAAAGTGGATGCTGATTATCATAAATGTTGGCAGCCATTGAAAAGTAATTTCAATCCAAATTGGAAGCTTGGAGATGACGAGAGCCAGAGTAAGACACAAATGTCATTTTCGATTTGAATCAAATGTAGAACATAGTCGTGTAAATGTAGAATCGATCTGCTGGTTGGTATTTATAGATGCATGTTGTAATTGCGTTATGTAAGCTATCTCCGGCGGCAAATTATGGTCCAAGACAAGTTTATTCCTGACAATAATCTATCCAGGGATGCAAACATTTCTACTTTACCCAATTGACAGGGGACGTAACATAGAACGTAGAAAACGAAATATTTCGTCGGAAAGTCACTGTTGCCGCCATGTTGCTGTATTTGCTGGCATTTAGCTTTCATCTTTTTATTTCTTGAGTGGACCAAGAAAAGAATGATATCTTCTTGAGACCCGACCGACAAAGCATAATGTACAGATTGTTACAGAAACAACCAACTACCGTAGATATTTCTGCTGCCAGCTTTTGCATTAGTCCCCCCTCCCCCCCCCCAATACAGGTTAATTTGCACGCAAGATGTTCTCTGATATCATGCAGTCATGTAGTAATGTTTCAAAATGAGTTAAAATGGTCATTGTGaatagaccttttagcttttctacaaaagagcctggatccagtgACGcatttacccatgggcccactgggcccgggcccaggggccccctaaaattcttatatctagggggccccgagtaaaatttgagaaaacctatgaagtgctgttaatttcactcttgtgtttgaattgagtgctaacgtcttcagacaacaccatggttcatgttttcatacattaacaaagttcctcgataaaaggaggaatctcgttgataccgaagcccaagtccatagaaaaaagaaagaactcgaagaggcgacaaccccaggaaacacgaacgcctatttcggattatctactgtgttagagcaaattgtgaaaggagatgaagctgcaacttcccaaatgcaataagggcacttagattgttgctcagtgcaatgaccgcactttgccatgcagagtttcctctagtgaaagaagtttctccatgctgacagggtcaagagtcaactgaggtccacaatgtcacaagagcgcgttgttgttgccttgtgcctaataaatggcagcaaattttgatgtcCTGAGGcagtggcgtagccactgggggggcgggggtatgaggggcaattgtccccacttctgtccaaagatggtccttgagatttctttaaaacagaagagaaagtagctgggtataggttgggaaagaactttccgagaaatgtcagatcttcaattttagcactggcaagcatggaatatggaatcagtgagtgcattctaagccaaagtaaaggatgtttcttcaaaattcgtccccgtgctccgattcgtaggataaccgtcacaaaatatcaaagtttccttgtcgctaatggcaagcataatgtgcggagatgcattctaagccaaagtaaagggcgtggccccaaaaattttccgggggctttgcttccctccccacttaatttaccctggacaAggacaagggtagttttcttgagagtgcaccgaaatgtatatattgtagtcattttttcgagtttccactgtcaaactgttttgttgatattatcgtgtttggctacgactgaatctggcggccatacatgctagcagagcaccgagtactatgatgcaaattttttttaggtatattctaaggggccccaaatagttttgggcccagggccccaacagacttaaatgcGGCCCTgcctggatcgagcgttattttcatacatttttattcgcgaggttcgatcgagtggcgttagagcttctatcactattgtgcacattcaaaaattctacaaaatgtagcaaaatatcgttcgattctgattcttttcagaatagctaaaaggtccattGTTGTTTGGTTGGCTTCTTTTCTTTGTTTCTTGTTGTTTGTAGTTTCTGGAAAATGTTGCTGTGTTTTTAGAATTAAAGAAATAGATTATTTATCA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF20510 all species →	HgmA_N	Homogentisate 1,2-dioxygenase N-terminal	Domain	Interproscan
PF04209 all species →	HgmA_C	Homogentisate 1,2-dioxygenase C-terminal	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR014710 all species →	Homologous_superfamily	RmlC-like jelly roll fold	Interproscan
IPR005708 all species →	Family	Homogentisate 1,2-dioxygenase	Interproscan
IPR011051 all species →	Homologous_superfamily	RmlC-like cupin domain superfamily	Interproscan
IPR046452 all species →	Domain	Homogentisate 1,2-dioxygenase, N-terminal domain	Interproscan
IPR046451 all species →	Domain	Homogentisate 1,2-dioxygenase, C-terminal domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11056 all species →	HOMOGENTISATE 1,2-DIOXYGENASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004411 all species →	Molecular Function	homogentisate 1,2-dioxygenase activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0006559 all species →	Biological Process	L-phenylalanine catabolic process	Interproscan
GO:0006570 all species →	Biological Process	tyrosine metabolic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for scaffold403.g7.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.