Gene detail

Detailed information of scaffold409.g2.t3 in Aurelia aurita complex sp. Pacific

Genomic Location: scaffold409:16760...45894
NR annotation: no NCBI-NR hit recorded
Species abbreviation AAURI2 · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

scaffold409.g2.t3

tatttgcaaaaattactgaactctgctcattttcgaaactttgtttcccctagccaatttcgaatgcagaaaagttgctgatttttagttctaaatgaacaacgagcgattcaaaattgaaacacgtttttttataagaaactggtttataagaaactagtactacgatgaccaaaaatttaagaaactctagtactacgttcaagaacaaggtggtatgatcataagagatgatgaaatgtacatgataacaccagtcccaagaagatttgcagctcaaaataaacctttagatagtcatggagctcatatcatctacaaaagatcagcacttcctacgtcacatcctgccaatgactttacatgtggagttatggacaaacttcgtacgatcaagaaaaatctgcgaagaagacgtcgagccacatcaacagctaaacctgaaaagattcttgagcttttgttagctgcagataaaacaacagttgcatatcatggaaaagaattccttcattcttatttactcgctcaaggcaatattgtcgctggtatattcaaagatgctacactggaatacccaataacagttgttttaacaagagttgtcttgatagaggatgcatcgcaactagcgattgccgacaaaagaaattccctcaaccagtctggctgcgcattaggttgtagtgttgcaggactggcatatgttggtatttgcggcaaatggtcaagtcagagcatttctgttgataagggactcactacagctctcacagttgcacatgaaatcggacacaaccttggattggaccatgacggaattggtgactcaaaagactgccctgatggacaatataccatgtcaagtgggggtgtggatggtggaaagggttttgaatggtcacattgcaactcccgtcaactcaatactatcctctcgggttccagctcatggtgcctgaatgataaaccaaccttgccagcactgactaatgtttcatttcaacattacggaactgtgtatagtggggataagcaatgtgaactggcttttggaaagggatacaatcattgttggctttacaaacattattgcaaccatttatactgcaagcgtccaaatgcccagttatgtgactacacaacttacccccctgctcatgggacttattgttctccacatcattggtgcatctacggtgaatgtgtgaaggatggaacaacccctcctccgcccatcgatggtggatggtcagattatggagagtacgcgacatgcaaccgaccctgtggaggaggagctcaatggaaaacaagatcatgtacaaaccctgcaccccaaaatggaggaaagaactgtcaaggccacgtgagaggtcactacaaaacttgtaatatgcaagcctgccctgctggtacaaaatcattcagattggaacagtgtcaaaaactttcaagcgaaaaatacgatatttattctggtaagtataaatctttatatcttcattatatctggcctgccctgctggtacaaaatcattcaggttggaacagtgtcaaaaactttcaagcgaaaaatacgatatttattctgctggtgagccttgtaagctcatctgtcaatctcctgaacaaagaccgtactactatggaaacgtggaagatggcactcttgcaacttcagctggtccggatatttgtatcatgggagtcagacgggtnggtaaaaaaaattatgcaccagttgcagttggctggtgagccttgtaagctcatctgtcaatctcctgaacaaagaccgtactactatggaaacgtggaagatggcactcttgcaacttcagctggtccggatatttgtatcatgggagtcagacggaaagtcggctgtgacttggtgttagagtccggttcagttcctgatcggtgtggaacttgtggaggtgacggttctacctgcgagcctgtaagcggcaaatcaaccgaaacatacacaagttatggccaccattatgtagcaactattccaagtggttcaatcaatttccatacacaagaacatggaaatacttttagtttcctcggtgttaaagttggcgatagcaacgatttggcctattatgtaccgagttggtcgaaaacatatactgtggcaggagctagtctcagatatacaatggaagattattattatcctgataaaattagggttactggcgtattcactgataaagtcaggttgtatcagcaattaaagagcacttgactttcgttggaaactgactgtattacaatgtttttttttatatatatattccaataaaaagttacaatatatttacgagatacactacattacttacaaaactactctacaatatgagctaccctacactacttacataattaccctacaatactactacaacgataccccaaggagcaaaaaagcaatgtctaccctgaggccattaacatatagatatataatataagaaaaagaagaaactagtcaaaatataagacaagaaaataaatgacatgaacaaaaagaacaactacataaaatctactcgtaaattactactaaacggggaaaggtggtggcatgtaatgaatcccccattgtgtcttatgcctgatcaaaagttctcaagtcgaaatgatgaaaaaatgagatcatattttactcgctccatttctatgaaacaaaaagccccagtttgtagtttcttgatttcatgaaatttccaactttttngagcacattggctgttctaacaatagctgagggtttaattacagtgagctgcaccagggagcaactaaaggatgcaattgtaggaatttataatgatatgctgcggcttgtgcaaccgctgtgaggagaggaagggttccactttggaaaatactatactaaacaatctgctgtagtatgtgttttgttgctgtggttcttgttgttgataaatgtacatcttatcaaattctgatgattttgacctagtgacatttcctgcactaaagtcagaatatgtgttgatgctcaaaggaggtgtgaataaagcattgcacaaaggccctctgtaaaaaagctgtgagattactgtacctgcaaggaaacaacataaaggatggggaaaggggggaggggggggttggtaaaccaggatcgtgcgttgatcaacatagaacaggggtcatcctattatctctgtgcagtatttttaggcccaaaggacagttatattgagcctaacatctaatactgcatatcaagtgacaaactttctgttcctgcaaagataacaagttgcccaagtgtgcgcccacaaggtacacgggtaggatgatgcgggatttatgcacctgcaagaaggaaaaaaaaaggaaagggggggggggacaaagggggtgatagactggttagtctacgtattgatctacattgaacagttatcaccctctacttgaaaatttggaagaacatatgtccttctcctgaccactaaactggggaagttgtttacctcctggcattatgagtgaagccgaatgcttgtacaaagcacaaccagtgtaattggtatgacagccaatgatatagactttaaaattccgttgcgtagaccatgggacagctggacaacacctggaatatttgtgttacaaccaggccacgggggtagatatgctgtaagcaattccactccattaatgtggtaaaaactcaagatgagcaactttgaagctgatggaactgcctgacattacagtgaatttcaattcttgccaggttattgcataccacataaatcagagaaggctagaagtgacctactaatagaggaagggaatttctacggggaagccgtgcagtaaatatatttaaaaaggggtgtttgtaaatgaagtgcggataattgaagactgataccttgcttggttgtaatgctaccacttggccttgggtgaccagcagctgacaaaagatgaccctttttgcgttgcttttctttgaggtctatagctgtgctcaggacataaagattgtaaactgcggcaacatcagagtataatataattgttccttgtttcaacaacctgcaagttctggtcccatctttcttgtttgctttgctcaataaagcacttgatatggcagctttcaataccttcatttccaccattgctacccccaatccagtatggaaagaaagtgatgtgcaccgg

Transcript

scaffold409.g2.t3

TATTTGCAAAAATTACTGAACTCTGCTCATTTTCGAAACTTTGTTTCCCCTAGCCAATTTCGAATGCAGAAAAGTTGCTGATTTTTAGTTCTAAATGAACAACGAGCGATTCaaaattgaaacacgtttttttataagaaactggtttataagaaactagtactacgatgaccaaaaatttaagaaactctagtactacgttcaagaacaaGGTGGTATGATCATAAGAGATGATGAAATGTACATGATAACACCAGTCCCAAGAAGATTTGCAGCTCAAAATAAACCTTTAGATAGTCATGGAGCTCATATCATCTACAAAAGATCAGCACTTCCTACGTCACATCCTGCCAATGACTTTACATGTGGAGTTATGGACAAACTTCGTACGATCAAGAAAAATCTGCGAAGAAGACGTCGAGCCACATCAACAGCTAAACCTGAAAAGATTCTTGAGCTTTTGTTAGCTGCAGATAAAACAACAGTTGCATATCATGGAAAAGAATTCCTTCATTCTTATTTACTCGCTCAAGGCAATATTGTCGCTGGTATATTCAAAGATGCTACACTGGAATACCCAATAACAGTTGTTTTAACAAGAGTTGTCTTGATAGAGGATGCATCGcaactagcgattgccgacaaaagaaattccctcaaccaGTCTGGCTGCGCATTAGGTTGTAGTGTTGCAGGACTGGCATATGTTGGTATTTGCGGCAAATGGTCAAGTCAGAGCATTTCTGTTGATAAGGGACTCACTACAGCTCTCACAGTTGCACATGAAATCGGACACAACCTTGGATTGGACCATGACGGAATTGGTGACTCAAAAGACTGCCCTGATGGACAATATACCATGTCAAGTGGGGGTGTGGATGGTGGAAAGGGTTTTGAATGGTCACATTGCAACTCCCGTCAACTCAATACTATCCTCTCGGGTTCCAGCTCATGGTGCCTGAATGATAAACCAACCTTGCCAGCACTGACTAATGTTTCATTTCAACATTACGGAACTGTGTATAGTGGGGATAAGCAATGTGAACTGGCTTTTGGAAAGGGATACAATCATTGTTGGCTTTACAAACATTATTGCAACCATTTATACTGCAAGCGTCCAAATGCCCAGTTATGTGACTACACAACTTACCCCCCTGCTCATGGGACTTATTGTTCTCCACATCATTGGTGCATCTACGGTGAATGTGTGAAGGATGGAACAACCCCTCCTCCGCCCATCGATGGTGGATGGTCAGATTATGGAGAGTACGCGACATGCAACCGACCCTGTGGAGGAGGAGCTCAATGGAAAACAAGATCATGTACAAACCCTGCACCCCAAAATGGAGGAAAGAACTGTCAAGGCCACGTGAGAGGTCACTACAAAACTTGTAATATGCAAGCCTGCCCTGCTGGTACAAAATCATTCAGATTGGAACAGTGTCAAAAACTTTCAAGCGAAAAATACGATATTTATTCTGGTAAGTATAAATCTTTATATCTTCATTATATCTGGCCTGCCCTGCTGGTACAAAATCATTCAGGTTGGAACAGTGTCAAAAACTTTCAAGCGAAAAATACGATATTTATTCTGCTGGTGAGCCTTGTAAGCTCATCTGTCAATCTCCTGAACAAAGACCGTACTACTATGGAAACGTGGAAGATGGCACTCTTGCAACTTCAGCTGGTCCGGATATTTGTATCATGGGAGTCAGACGGGTNGGTAAAAAAAATTATGCACCAGTTGCAGTTGGCTGGTGAGCCTTGTAAGCTCATCTGTCAATCTCCTGAACAAAGACCGTACTACTATGGAAACGTGGAAGATGGCACTCTTGCAACTTCAGCTGGTCCGGATATTTGTATCATGGGAGTCAGACGGAAAGTCGGCTGTGACTTGGTGTTAGAGTCCGGTTCAGTTCCTGATCGGTGTGGAACTTGTGGAGGTGACGGTTCTACCTGCGAGCCTGTAAGCGGCAAATCAACCGAAACATACACAAGTTATGGCCACCATTATGTAGCAACTATTCCAAGTGGTTCAATCAATTTCCATACACAAGAACATGGAAATACTTTTAGTTTCCTCGGTGTTAAAGTTGGCGATAGCAACGATTTGGCCTATTATGTACCGAGTTGGTCGAAAACATATACTGTGGCAGGAGCTAGTCTCAGATATACAATGGAAGATTATTATTATCCTGATAAAATTAGGGTTACTGGCGTATTCACTGATAAAGTCAGGTTGTATCAGCAATTAAAGAGCACTTGACTTTCGTTGGAAACTGACTGTATTACAATGTTTttttttatatatatattccaataaaaagttacaatatatttacgagatacactacattacttacaaaactactctacaatatgagctaccctacactacttacataattaccctacaatactactacaacgataccccaaggagcaaaaaagcaatgtctaccctgaggccattaacatatagatatataatataagaaaaagaagaaactagtcaaaatataagacaagaaaataaatgacatgaacaaaaagaacaactacataaaatctactcgtaaattactactaaacggggaaaggtggtggcatgtaatgaaTCCCCCATTGTGTCTTATGCCTGATCAAAAGTTCTCAAGTCGAAATGATGAAAAAATGAGATCATATTTTACTCGCTCCATTTCTATGAAACAAAAAGCCCCAGTTTGTAGTTTCTTGATTTCATGAAATTTCCAACTTTTTNgagcacattggctgttctaacaatagctgagggtttaattacagtgagctgcaccagggagcaactaaaggatgcaattgtaggaatttataatgatatgctgcggcttgtgcaaccgctgtgaggagaggaagggttccactttggaaaatactatactaaacaatctgctgtagtatgtgttttgttgctgtggttcttgttgtTGATAAATGTACATCTTATCAAATTCTGATGATTTTGACCTAGTGACATTTCCTGCACTAAAGTCAGAATATGTGTTGATGCTCAAAGGAGGTGTGAATAAAGCATTGCACAAAGGCCCTCTGTAAAAAAGCTGTGAGATTACTGTACCTGCAAGGAAACAACATAAAGGATGGGGAAAGGGGGGAGGGGGGGGTTGGTAAACCAGGATCGTGCGTTGATCAACATAGAACAGGGGTCATCCTATTATCTCTGTGCAGTATTTTTAGGCCCAAAGGACAGTTATATTGAGCCTAACATCTAATACTGCATATCAAGTGACAAACTTTCTGTTCCTGCAAAGATAACAAGTTGCCCAAGTGTGCGCCCACAAGGTACACGGGTAGGATGATGCGGGATTTATGCACCTGCAAGAAGGAAAAAAAAAGGAAAGGGGGGGGGGGACaaagggggtgatagactggttagtctacgtattgatctacattgaacagttatcaccctctacttgaaaatttggaagaacatatgtccttctcctgaccactaaactggggaagttgtttacctcctggcattatgagtgaagccgaatgcttgtacaaagcacaaccagtgtaattgGTATGACAGCCAATGATATAGACTTTAAAATTCCGTTGCGTAGACCATGGGACAGCTGGACAACACCTGGAATATTTGTGTTACAACCAGGCCACGGGGGTAGATATGCTGTAAGCAATTCCACTCCATTAATGTGGTAAAAACTCAAGATGAGCAACTTTGAAGCTGATGGAACTGCCTGACATTACAGTGAATTTCAATTCTTGCCAGGTTATTGCATACCACATAAATCAGAGAAGGCTAGAAGTGACCTACTAATAGAGGAAGGGAATTTCTACGGGGAAGCCGTGCAGTaaatatatttaaaaaggggtgtttgtaaatgaagtgcggataattgaagactgataccttgcttggttgtaatgctaccacttggccttgggtgaccagcagctgacaaaagatgaccctttttgcgttgcttttctttgaggtctatagctgtgctcaggacataaagattgtaaactgcggcaacatcagagtataatataattgttccttgtttcaacaacctgcaaGTTCTGGTCCCATCTTTCTTGTTTGCTTTGCTCAATAAAGCACTTGATATGGCAGCTTTCAATACCTTCATTTCCACCATTGCTACCCCCAATccagtatggaaagaaagtgatgtgcaccgg

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00090 all species →	TSP_1	Thrombospondin type 1 domain	Domain	Interproscan
PF17771 all species →	ADAMTS_CR_2	ADAMTS cysteine-rich domain 2	Domain	Interproscan
PF01421 all species →	Reprolysin	Reprolysin (M12B) family zinc metalloprotease	Domain	Interproscan
PF19236 all species →	ADAMTS_CR_3	ADAMTS cysteine-rich domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR050439 all species →	Family	ADAMTS and ADAMTS-like	Interproscan
IPR001590 all species →	Domain	Peptidase M12B, ADAM/reprolysin	Interproscan
IPR036383 all species →	Homologous_superfamily	Thrombospondin type-1 (TSP1) repeat superfamily	Interproscan
IPR000884 all species →	Repeat	Thrombospondin type-1 (TSP1) repeat	Interproscan
IPR024079 all species →	Homologous_superfamily	Metallopeptidase, catalytic domain superfamily	Interproscan
IPR041645 all species →	Domain	ADAMTS, cysteine-rich domain 2	Interproscan
IPR045371 all species →	Domain	ADAMTS/ADAMTS-like, cysteine-rich domain 3	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13723 all species →	ADAMTS A DISINTEGRIN AND METALLOPROTEASE WITH THROMBOSPONDIN MOTIFS PROTEASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004222 all species →	Molecular Function	metalloendopeptidase activity	Interproscan
GO:0006508 all species →	Biological Process	proteolysis	Interproscan
GO:0030198 all species →	Biological Process	extracellular matrix organization	Interproscan
GO:0031012 all species →	Cellular Component	extracellular matrix	Interproscan
GO:0008237 all species →	Molecular Function	metallopeptidase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for scaffold409.g2.t3.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.