Gene detail

Detailed information of scaffold41.g35.t4 in Morbakka virulenta

Genomic Location: scaffold41:1218865...1271681
NR annotation: XP_042721527.1, ATP-dependent RNA helicase DDX55 isoform X2 [Lagopus leucura]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

scaffold41.g35.t4

CACATGGAAAACTTGAAAAAGAGAGTTGTAAAGTTTGCGAAGTATCCCCATCACATGTGGAAACAAGCAAACAAAAGTATTAGTGACAAGAGATTTGCCAAGCAAATTGAGTTAAGAAAAGCAGTCCAATGTGCCATTTAATACCTAACCTAAATTAGGTCAAACAGATCGTTGCTATCCTCCACTCGACTGATTTCAAACATTATGCACAAGCTTAACTCAGTGCTTTGTGTGTGTGATTAGTGTTCCTGCAACTCAGCTGAAACTTGAAGTTAAAAACATTTTAAAGGCAAGCTTCTTTAGGGGGTACATTAAAAAGACATTTGAAATGAAATGGTGCGAGCTAACTCCCAAATTATCAGAGTCTACACTGTCGTCATTGCAGCAGCTAGGCTTCGTGAAAACTACACCAGTACAAGCTACTTGCATTCCTCTTTTCATGTCAAACAAGGATGTTGCTGCTGAAGCAGTGACAGGATCAGGAAAAACTTTGGCATTTGTTATTCCAATTATAGAATGTCTGATTCACAGGATTGTTTATATGGCAGTCACAAACTTCTACCCATTCAAACTCATGCCACTTCGCAGGGTAGGAGCAGTAATTGTCACACCCACCAGAGAGCTAGCAATACAGATTGATGAGGTCTTGGCTCATTTTTCAAAAAGTTGTGAAATAAGCAAAATATTGTTCGTTGGTGGAACTTCAGTCGACGGAAATATAACATCTTTTGAAGAAAATGGTGGAAATATTATAACGGCAACACCAGGACGACTTCTTGACCTATTTAGTCGAAAATCAACAACGTTCAATTTGCAGAATTCAGTCAGATCTTTAGAAGTCTTAGTCCTTGATGAAGCTGATCGGCTTCTGGATCTAGGTTTTCAAGACAGTCTCAATACATTACTTAGCTATCTACCAAAGCAGAGGAGAACAGGACTGTTTTCTGCAACTCAGAAAGAGGAGGTCGAGTCACTCATCAGGGCCGGATTGAGGAATCCAGTTCGAATCGTTGTCAAAGAGAAAAGTTCGAATCCTGGATGTGTTGATAAGAGAACACCAGACAAATTAGAAAATTACTACCAGGTTTGTGAAAGTGACGAAAAGTTCAGTCAGCTTGTGGCTTTTCTTAAAGAAAAACAGGGAGAAAAACACATTCTTTTCCTCAGCACTTGTGCCTGTGTAGACTACTTCACAAAAATATTGCCAAATGGCCTTTTGATCTGTACGGATGTAATGGCCAGAGGAGTAGATGTTCCTGAAGTTCATTGGGTCATACAGTACGATCCCCCAAGTAACGCAAGTGCATTTGTTCATCGTTGTGGAAGAACAGCTAGAATTGGAAAAAAAGGCAGTGCATTAGCATTTCTACTACCAGCGGAGGAAAGTTATGTCGAGTTTGTGAATTTAAATCAGAAGGCCCCCATAGAGCCGATAGAAAAGTTAAAAGACATACCAGATTTGTTACCAAAGCTGAGAAAACTGGCGACACGCGACAGGTTCGTAATTTAAGGTCAAGTTATCCTTGACCTTAAAGACAAGCCCTTGTTTTTTAATTTttattattattattattattattattgagtggtggagcaatacgagcccatgggggactcaggggtagaaaccccagcaaacccatccgactaccagcccgataagggtaaactgggtgcatgcatcacacccaagtgtgtgcgatattgatgtacataaaaaaaaaccaaaaaaacaaaaaaacaaaaacaaaaaaacagcacattaccttgcagttggggcctgtttaggtttcccagtttaggtgacccattctgcttaaaacggtctccgtagcgaggcttcacccaagaccttaggactaagtaacaaagtaagaactcggtactcagcccttcagaacaagagatccacgctcacgacacctagatatgatgctcccccactactcccgcccgttaaacagaaatgcatgatgtgtcagcccttttgggacatgcacaaccggttaaggtcaggcaactgactggcaagtctgcggtttgagcgggaatgtttgatctagcccattcataattaccaggcaaaactagttcgtgtaccccaccaatcaattaagatcagaggtcatacgtcttacgacgctacgccacttgctgacagcaatagtcagtgcctggtgtaattatcagggcaatttgactacacagggcaggggggtcaatgtccctttccagcagtactaggcagtactaagtttagccggccaattaaggcaagttcaactt

Protein

Uniprot

Uniprot term	Description
Q5ZLN8	ATP-dependent RNA helicase DDX55 OS=Gallus gallus OX=9031 GN=DDX55 PE=2 SV=1
Q8NHQ9	ATP-dependent RNA helicase DDX55 OS=Homo sapiens OX=9606 GN=DDX55 PE=1 SV=3
Q6ZPL9	ATP-dependent RNA helicase DDX55 OS=Mus musculus OX=10090 GN=Ddx55 PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00270	DEAD	DEAD/DEAH box helicase	Domain	Interproscan
PF00271	Helicase_C	Helicase conserved C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR011545	Domain	DEAD/DEAH box helicase domain	Interproscan
IPR000629	Conserved_site	ATP-dependent RNA helicase DEAD-box, conserved site	Interproscan
IPR014001	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan
IPR001650	Domain	Helicase, C-terminal domain-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24031	RNA HELICASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0005730	Cellular Component	nucleolus	Interproscan