Detailed information of scaffold413.g7.t3 in Aurelia aurita complex sp. Pacific

Genomic Location: scaffold413:126903...156094
NR annotation: no NCBI-NR hit recorded
Species abbreviation AAURI2 · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Gene family
Family typeMembership / link
Ubiquitin familyUBD|ZnF|NZF · all ubiquitin genes in this species

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00176
all species →
SNF2-rel_domSNF2-related domainDomainInterproscan
PF00271
all species →
Helicase_CHelicase conserved C-terminal domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR027417
all species →
Homologous_superfamilyP-loop containing nucleoside triphosphate hydrolaseInterproscan
IPR001876
all species →
DomainZinc finger, RanBP2-typeInterproscan
IPR014001
all species →
DomainHelicase superfamily 1/2, ATP-binding domainInterproscan
IPR000330
all species →
DomainSNF2, N-terminalInterproscan
IPR001650
all species →
DomainHelicase, C-terminal domain-likeInterproscan
IPR038718
all species →
Homologous_superfamilySNF2-like, N-terminal domain superfamilyInterproscan
IPR036443
all species →
Homologous_superfamilyZinc finger, RanBP2-type superfamilyInterproscan
IPR049730
all species →
DomainSNF2/RAD5-like, C-terminal helicase domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR45766
all species →
DNA ANNEALING HELICASE AND ENDONUCLEASE ZRANB3 FAMILY MEMBERInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0006281
all species →
Biological ProcessDNA repairInterproscan
GO:0031297
all species →
Biological Processreplication fork processingInterproscan
GO:0048478
all species →
Biological Processobsolete replication fork protectionInterproscan
GO:0005524
all species →
Molecular FunctionATP bindingInterproscan
GO:0140658
all species →
Molecular FunctionATP-dependent chromatin remodeler activityInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K25861ZRANB3; DNA annealing helicase and endonuclease ZRANB3EC:5.6.2.-
EC:3.1.-.-
DNA repair and recombination proteinsko03400deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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