Gene detail

Detailed information of scaffold416.g4.t5 in Aurelia aurita complex sp. Pacific

Genomic Location: scaffold416:97448...117954
NR annotation: no NCBI-NR hit recorded
Species Aurelia aurita complex sp. Pacific · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

scaffold416.g4.t5

aggattaattcccaaacagcaactttcattttgaaaaaaatacgaaaatcctgtgtgatatcacctttcaaaaaactgcaaaaatcatcgttttgtttacattttgacgacggagcccctttaaaggttcgctcaagtaacttcgaatacctccacgcatatcgatggtttacagcggttttggaaacagatgatatgggcaaattaaagacttttgaagatttcatgtcattgtcgatgccagttgatgatgaagaggtgaacaaaacagtaaaagaacttcacagaatgagcatcatcccaaatcctgatacaaatgtaattaatccattaattcatgatgccctttttgccattgcctatgcacagattcgtaaagacgtaattaatccattgattcatgatgccctttctgccattgcctatgcgttcaaagcatcaagtgaatccaagcaatgcattgaacttcatgcagcaccgaaagaattttgcccagtcagaagaccaagatgcaatccattgagtgctcatctatcaaaggtaatttttcgtggaatgactggcgacgtaaagtttacaaaatcaaaatatcgaaatatcaccatcatggatgctaatgaagtcagaagaggagtacagcaaaaagaagagccatttttattccatgacccaacaatgaagactaaaaatcccaatgacaaattctcaggtttttgcaaagatattctcgacaaattagcagaggaccttcagttcaaatatgacttgtatttggttcctgatgagcaatatggcgacaaaaggcagaacggatcttggaatggaatggttggagaactcatcaacaaggaagcagacattgctattggtgcactaacaatgacgtcagaacgtgaaggagtaattgattttagcaaatcattcatggacttcacaatggctattttattgaagaagaaacctccgcattacattggctattttcagttccttaggccattcactgttggcacttggatttcgattgttggtgctacagtggccgtggcatttatcatgttcataatcgaacgcttcagtccaatgggttatcgcaaacttgcgagtagaagtgccgattataacggcaatgaattcagccttgcaaactcgttctggtttgcaacagcctcgcttttgcagcagggacctgatcagactccaaggagtatagctgggagaatactttcaacctcattttggttctttgtcagtgttatcatggctgcatatattgcaggaatggcaggataccttatgactgcaaaacctgacgaacgtttcaacactttggaggatatcatgagcagcagagacataaagtatggaacattgagaggtggacaaaccgccaaacttttacaaacatcgaaatatcatttgcaccgaaagatgcacaagaaaataacaactatgggagcattcgagctgtctataaagtcagccattgataaagtacgaactggtgaactggctttcattggtgatcaacctcttttggagtacgcccatacgaggcagccatgtgatacaagtattatcaaacacgtgttagaaatgcagagttatgcctttggtttgcaactaagttctgaatggacgaattcaatatctgtacatctattgcatttaagagagacaggattcatgcaaagccttcgaatgaaatggtgggaagagcaaacagaatgcaacgaagctaaacaaccaattagatcgcccttacctcttggtttcaacaatatggcgggtatctgcgctgtattggccgtaggaatcttcctatctttgcttcttctgttgtttgaaataaaatgcagggacctaatgaaggccagttgtatgaagggaacaaatctcccaagaaaggaacaacaaatgatcaaagcaccacaaattacatatcttgattataaagcaaacagtgatcattatgatgttgcattttcaaagatgtatggatcaaaatatgaagaaaactcaacattgactcattcttacgaagaaagccaaaagatgtacaaggatgccccggaatcaactctttgagcactaagaatcattagcaactgtacaaaatcgcagggggtagagatatgaagatgatatcttctcagtcccgtttgcaatccatgagccgatgaaataatgtggaaagttttattcggtagaaaatcgcttctcgtcccagaggattatcaggatgctaaactgcattattaatgtgaattgtattttggttatgttttgcaaggaaaagtagcataccgggtcagtaacaaaaagttaacacgtttggtgggctgttgaataaaaagtaagtggccgttattcaaataaaattaccactcataggctgacttagatgtggaaattttgtttggtaaaagcactcatcttttagacgcagagattaggaaaaagcggttaagaggtttgtatgggatgaagcatagggctcaaatctttaaaaaggtgggtataaaatcctattacagttttctttgaatcaaattgcttggaaggaacttagggatttttgctgtaagtctgccgtggaaatttattgatatcttgatttgcttcaaaatggcggcatttattaaatttgaggttatgacgtcatcaaatttctaaatcctaaaccagaagagctacagatttttggtcgccaacatattgtagcatttttcctctgttggtttaggatatacgatgatttaaattttttcaaaaataattaaagtgccgccatttcgaaaaagcaagatatcaaaaatttccacggcagatttacagcaaagtaccataagtatctttcaagccattcaattcgaaggaaaatgtaatagaattttacacccacctttttaaagatttgaaagatttgagccctatgctatgggatggagaattcgccgtaagattctggtccatgatttacatgatattggcatttaaattctatttctgaaaaagacaattgtattgaattcttatttcactggcaagtcacaaatcctttgctaatttctgggtcgcaatgatgaatgattttaccaaacaaaatgttcacatctgagttaggtcgcgtaattccacagccgtattacctaacgtgttatcttacgtgttacctcgttactcacctggtgcaacaattacatctagataaactatatgtaataaactttaaacaatttagtctcttccattactaacacgtccaactgagcgtaataatttggctgtagcggtaccttctttatacaacatagagaagctgcggcagacgggtgcatggctgtgggcctcatcggccagctcaaggttaagtcggcaaggacagtggcatttgggatttcacagcaatggccagccacaaaatgtgcttgttttgccagccaaaattatcgtcctaattttagagaaagttacacaaatataggtactactttaaa

Transcript

scaffold416.g4.t5

aggattaattcccaaacagcaactttcattttgaaaaaaatacgaaaatcctgtgtgatatcacctttcaaaaaactgcaaaaatcatcgttttgtttacattttgacgacggagcccctttaaagGTTCGCTCAAGTAACTTCGAATACCTCCACGCATATCGATGGTTTACAGCGGTTTTGGAAACAGATGATATGGGCAAATTAAAGACTTTTGAAGATTTCATGTCATTGTCGATGCCAGTTGATGATGAAGAGGTGAACAAAACAGTAAAAGAACTTCACAGAATGAGCATCATCCCAAATCCTGATACAAATGTAATTAATCCATTAATTCATGATGCCCTTTTTGCCATTGCCTATGCACAGATTCGTAAAGACGTAATTAATCCATTGATTCATGATGCCCTTTCTGCCATTGCCTATGCGTTCAAAGCATCAAGTGAATCCAAGCAATGCATTGAACTTCATGCAGCACCGAAAGAATTTTGCCCAGTCAGAAGACCAAGATGCAATCCATTGAGTGCTCATCTATCAAAGGTAATTTTTCGTGGAATGACTGGCGACGTAAAGTTTACAAAATCAAAATATCGAAATATCACCATCATGGATGCTAATGAAGTCAGAAGAGGAGTACAGCAAAAAGAAGAGCCATTTTTATTCCATGACCCAACAATGAAGACTAAAAATCCCAATGACAAATTCTCAGGTTTTTGCAAAGATATTCTCGACAAATTAGCAGAGGACCTTCAGTTCAAATATGACTTGTATTTGGTTCCTGATGAGCAATATGGCGACAAAAGGCAGAACGGATCTTGGAATGGAATGGTTGGAGAACTCATCAACAAGGAAGCAGACATTGCTATTGGTGCACTAACAATGACGTCAGAACGTGAAGGAGTAATTGATTTTAGCAAATCATTCATGGACTTCACAATGGCTATTTTATTGAAGAAGAAACCTCCGCATTACATTGGCTATTTTCAGTTCCTTAGGCCATTCACTGTTGGCACTTGGATTTCGATTGTTGGTGCTACAGTGGCCGTGGCATTTATCATGTTCATAATCGAACGCTTCAGTCCAATGGGTTATCGCAAACTTGCGAGTAGAAGTGCCGATTATAACGGCAATGAATTCAGCCTTGCAAACTCGTTCTGGTTTGCAACAGCCTCGCTTTTGCAGCAGGGACCTGATCAGACTCCAAGGAGTATAGCTGGGAGAATACTTTCAACCTCATTTTGGTTCTTTGTCAGTGTTATCATGGCTGCATATATTGCAGGAATGGCAGGATACCTTATGACTGCAAAACCTGACGAACGTTTCAACACTTTGGAGGATATCATGAGCAGCAGAGACATAAAGTATGGAACATTGAGAGGTGGACAAACCGCCAAACTTTTACAAACATCGAAATATCATTTGCACCGAAAGATGCACAAGAAAATAACAACTATGGGAGCATTCGAGCTGTCTATAAAGTCAGCCATTGATAAAGTACGAACTGGTGAACTGGCTTTCATTGGTGATCAACCTCTTTTGGAGTACGCCCATACGAGGCAGCCATGTGATACAAGTATTATCAAACACGTGTTAGAAATGCAGAGTTATGCCTTTGGTTTGCAACTAAGTTCTGAATGGACGAATTCAATATCTGTACATCTATTGCATTTAAGAGAGACAGGATTCATGCAAAGCCTTCGAATGAAATGGTGGGAAGAGCAAACAGAATGCAACGAAGCTAAACAACCAATTAGATCGCCCTTACCTCTTGGTTTCAACAATATGGCGGGTATCTGCGCTGTATTGGCCGTAGGAATCTTCCTATCTTTGCTTCTTCTGTTGTTTGAAATAAAATGCAGGGACCTAATGAAGGCCAGTTGTATGAAGGGAACAAATCTCCCAAGAAAGGAACAACAAATGATCAAAGCACCACAAATTACATATCTTGATTATAAAGCAAACAGTGATCATTATGATGTTGCATTTTCAAAGATGTATGGATCAAAATATGAAGAAAACTCAACATTGACTCATTCTTACGAAGAAAGCCAAAAGATGTACAAGGATGCCCCGGAATCAACTCTTTGAGCACTAAGAATCATTAGCAACTGTACAAAATCGCAGGGGGTAGAGATATGAAGATGATATCTTCTCAGTCCCGTTTGCAATCCATGAGCCGATGAAATAATGTGGAAAGTTTTATTCGGTAGAAAATCGCTTCTCGTCCCAGAGGATTATCAGGATGCTAAACTGCATTATTAATGTGAATTGTATTTTGGTTATGTTTTGCAAGGAAAAGTAGCAtaccgggtcagtaacaaaaagttaacacgtttggtgggctgttgaataaaaagtaagtggccgttattcaaataaaattaccactcataggctgacttagatgtggaaattttgtttggtaaaagcactcatcttttagacgcagagattaggaaaaagcggttaagaggtttgtatgggaTGAagcatagggctcaaatctttaaaaaggtgggtataaaatcctattacagttttctttgaatcaaattgcttggaaggaacttagggatttttgctgtaagtctgccgtggaaatttattgatatcttgatttgcttcaaaatggcggcatttattaaatttgaggttatgacgtcatcaaatttctaaatcctaaaccagaagagctacagatttttggtcgccaacatattgtagcatttttcctctgttggtttaggatatacgatgatttaaattttttcaaaaataattaaagtgccgccatttcgaaaaagcaagatatcaaaaatttccacggcagatttacagcaaagtaccataagtatctttcaagccattcaattcgaaggaaaatgtaatagaattttacacccacctttttaaagatttgaaagatttgagccctatgctatgggatggagaattcgccgtaagattctggtccatgatttacatgatattggcatttaaattctatttctgaaaaagacaattgtattgaattcttatttcactggcaagtcacaaatcCtttgctaatttctgggtcgcaatgatgaatgattttaccaaacaaaatgttcacatctgagttagGTCGCGTAATTCCACAGCCGTATTACCTAACGTGTTATCTTACGTGTTACCTCGTTACTCACCTGGTGCAACAATTACATCTAGATAAACTATATGTAATAAACTTTAAACAATTTAGTCTCTTCCATTACTAACACGTCCAACTGAGCGTAATAATTTGGCTGTAGCGGTACCTTCTTTATACAACATAGAGAAGCTGCGGCAGACGGGTGCATGGCTGTGGGCCTCATCGGCCAGCTCAAGGTTAAGTCGGCAAGGACAGTGGCATTTGGGATTTCACAGCAATGGCCAGCCACAAAATGTGCTTGTTTTGCCAGCCAAAATTATCGTCCTAATTTTAGAGAAAGTTACACAAATATAGGTACTACTTTAAA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF10613 all species →	Lig_chan-Glu_bd	Ligated ion channel L-glutamate- and glycine-binding site	Domain	Interproscan
PF00060 all species →	Lig_chan	Ligand-gated ion channel	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR019594 all species →	Domain	Ionotropic glutamate receptor, L-glutamate and glycine-binding domain	Interproscan
IPR001320 all species →	Domain	Ionotropic glutamate receptor, C-terminal	Interproscan
IPR015683 all species →	Family	Ionotropic glutamate receptor	Interproscan
IPR001508 all species →	Family	Ionotropic glutamate receptor, metazoa	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR18966 all species →	IONOTROPIC GLUTAMATE RECEPTOR	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0015276 all species →	Molecular Function	ligand-gated monoatomic ion channel activity	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0008066 all species →	Molecular Function	glutamate receptor activity	Interproscan
GO:0035249 all species →	Biological Process	synaptic transmission, glutamatergic	Interproscan
GO:0038023 all species →	Molecular Function	signaling receptor activity	Interproscan
GO:0050804 all species →	Biological Process	modulation of chemical synaptic transmission	Interproscan
GO:0098839 all species →	Cellular Component	postsynaptic density membrane	Interproscan
GO:1904315 all species →	Molecular Function	transmitter-gated monoatomic ion channel activity involved in regulation of postsynaptic membrane potential	Interproscan
GO:0005216 all species →	Molecular Function	monoatomic ion channel activity	Interproscan
GO:0006811 all species →	Biological Process	monoatomic ion transport	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for scaffold416.g4.t5.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.