Gene detail

Detailed information of scaffold417.g5.t2 in Aurelia aurita complex sp. Pacific

Genomic Location: scaffold417:22881...38144
NR annotation: no NCBI-NR hit recorded
Species Aurelia aurita complex sp. Pacific · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

scaffold417.g5.t2

agggaatttccaagaattcttcaaaacaaccagatgaacgatctgatcgattgcaccgaacgaaattcgttgacattagttgacattcgacacatctctacaagcacaaaatcttttctgaaccactcgaagcagaagtaacgggtcaacgggccaggatttggtacacgaagcatccgtgcaaccttggaacacggtacggaattgaaggttgctgctttgtcaaagaataatggcaagtcgcctggagaaatcgagagcttttcaactgcttcaagaagaatgggaagagcgcggtacatcaggcattaatgattaccttgctttgaaacacttcatattgaaatggatggatgaaaaacccgaactaaatctgccgtacgaacttttgcgaagtcaatttgttgctactttgtcccaagtctgttcaaaggaagacataaagaaaggcagggttgcatttagagtcaacgaaagatcagagtacctaagattccatcgggtaggaaaggtagtaatggaagcacgggaaaccttttgtggagttttgaagcaaagtgcaataggacaatttagttacaaagagttgtgtaacgagttcatgattgccaaactagcctacccttcagttaatttgttgcaaatgactcttcatttggtaaagtgtagtttcctcttaattagctttttacccactgatacaagtgatgaagagaacccgaaaagaactgacaatcagatcaggagtgccgcaagagtagaagataatgctttgaaacaacagggacaaaatttgatgagcgtggagaccaggaaaaggttagcagaagataagaacggcataacggtttcattggcagcagacgacttcatggaagcagagagtgacaaggaggaaggaatagttgattttaggtcacaaaatgttggggaaagacgttctgtcactctgaatattacgtatcataacgacggcaagatgaagataactacctgtaaactgcttgataattgtgatgtcttttgtgttgaggatgatttagaaatagcagcaggagagagggtgggtttatttaagaaaaactcgtgctacaaaatcaaaattacatacagcagcaaaggcgttggtacccacaagactccgttggtcctcgaatttcaaaacgaaaatggagaacattactttgaaatctggcgtttcttgagtggccaaacgaagaatgaggaaatggatgaaataaagcctacagctccatataaagcatttgatccacgagaaactgctagagatccatccagtgagattattcctggagttcctcctgaaggcttatcaaatggaacaatcgaagtccccctcgacgactgcaaagttcctcgagagctgcaatctactaccaaacatgttagaattccagaatcatggaaagaaatcttggaacaagatctaactttgcagaaccacaaggccaagtttgatgctttgctgtatatcgaagaaatgcagatggaagttgacatcagacgatatgatatgaaagatgctgaaatgacaaaggagagcaacgaccatcttggactcaaggtacctggcctcgctgaaaacagaccttctcttattcccggtgatcgagtttatgttcaggaaacgaagaatggaaaaccagtggaacacagagaatacgaagggtttattcattttattgaagaggagaaaattttgctaaagttcaaaaacagcttccacggcagcttcatcaaagggaaacgctatcatgtccggttcagtttcaatcgcttgccgttaaaacttcaacacagagcacttaaacttgcacatgaacttgtggaggctggcagatttccctacttggatatagacaccaaaaatgcatcgagggattttactgaccttaacttgagcttgcatgatataaagattgagaagaacgaagaacagtacactgcagtaaagaacattgtctctggcacatcaaagccttttccatacatcatatttggtccaccggggactgggaaaactgtaacaacagtggaagctatgaaacaggtgctgaaactacaaccaacaagtagaattctagcatgcgcaccatccaacagtgcagctgatctcatgttggagagatttctagattcatgcccaatcatggtaacagaagtatttcgtctgaatgcattcagcagagcaatcaaaagccttcccgaaaagctcaagaaacattgcaaaatagtgaaacggggatggaaagaaggatttgacataccaagttgtgcagaagtcaagaactatcggctcgttgtttgcactatgacgacagctgggaggctcgtaagcatgggagttcctcgaaatcatttcagccacgttttcatggacgaatgtggccaggcgttggaaccagaagcactgataccgctagctgggttgcttgatggaggcaatgatggagggcacgctaatggcgggcaactggtgctcgctggagatccgaagcagcttgggcctgtgctgaggtcatcccttgcaatcaagtatggcttccagatgtcactattggaaagattgatgcaaaaagcttcgagatatcaacgaatcgatggtgaatttgatcaaaattacatcacaaaattagtgaataactatcgctcacatcctgctattctcaagggaatgttggtgagacctctcttaataaactccaaaagctacaaaatcgtgctgccagaatagttaccggcagtcgatatgaccagtcagccttgccactctttcgtgccctaggatggcccacggttagggaattgattgatcttgaaacactaaaaatatgagcgacatgttcaatagagtgaacgaaacaacctctcgcgtacttaggaattctaatataaaccttaggactccaatgttaagaacatcagctggtcagagatgtttttcattcagaggggccagtctctggaatgggttgaatgatgaattaaaaggagcacctactctaaagaaattccgggaagggttgatgaaatcccacaaagcataagttgagatgctttatgcaatgaactcttttaatttta

Transcript

scaffold417.g5.t2

AGGGAATTTCCAAGAATTCTTCAAAACAACCAGATGAACGATCTGATCGATTGCACCGAACGAAATTCGTTGACATTAGTTGACATTCGACACATCTCTACAAGCACAAAATCTTTTCTGAACCACTCGAAGCAGAAGTAACGGGTCAACGGGCCAGGATTTGGTACACGAAGCATCCGTGCAACCTTGGAACACGGTACGGAATTGAAGGTTGCTGCTTTGTCAAAGAATAATGGCAAGTCGCCTGGAGAAATCGAGAGCTTTTCAACTGCTTCAAGAAGAATGGGAAGAGCGCGGTACATCAGGCATTAATGATTACCTTGCTTTGAAACACTTCATATTGAAATGGATGGATGAAAAACCCGAACTAAATCTGCCGTACGAACTTTTGCGAAGTCAATTTGTTGCTACTTTGTCCCAAGTCTGTTCAAAGGAAGACATAAAGAAAGGCAGGGTTGCATTTAGAGTCAACGAAAGATCAGAGTACCTAAGATTCCATCGGGTAGGAAAGGTAGTAATGGAAGCACGGGAAACCTTTTGTGGAGTTTTGAAGCAAAGTGCAATAGGACAATTTAGTTACAAAGAGTTGTGTAACGAGTTCATGATTGCCAAACTAGCCTACCCTTCAGTTAATTTGTTGCAAATGACTCTTCATTTGGTAAAGTGTAGTTTCCTCTTAATTAGCTTTTTACCCACTGATACAAGTGATGAAGAGAACCCGAAAAGAACTGACAATCAGATCAGGAGTGCCGCAAGAGTAGAAGATAATGCTTTGAAACAACAGGGACAAAATTTGATGAGCGTGGAGACCAGGAAAAGGTTAGCAGAAGATAAGAACGGCATAACGGTTTCATTGGCAGCAGACGACTTCATGGAAGCAGAGAGTGACAAGGAGGAAGGAATAGTTGATTTTAGGTCACAAAATGTTGGGGAAAGACGTTCTGTCACTCTGAATATTACGTATCATAACGACGGCAAGATGAAGATAACTACCTGTAAACTGCTTGATAATTGTGATGTCTTTTGTGTTGAGGATGATTTAGAAATAGCAGCAGGAGAGAGGGTGGGTTTATTTAAGAAAAACTCGTGCTACAAAATCAAAATTACATACAGCAGCAAAGGCGTTGGTACCCACAAGACTCCGTTGGTCCTCGAATTTCAAAACGAAAATGGAGAACATTACTTTGAAATCTGGCGTTTCTTGAGTGGCCAAACGAAGAATGAGGAAATGGATGAAATAAAGCCTACAGCTCCATATAAAGCATTTGATCCACGAGAAACTGCTAGAGATCCATCCAGTGAGATTATTCCTGGAGTTCCTCCTGAAGGCTTATCAAATGGAACAATCGAAGTCCCCCTCGACGACTGCAAAGTTCCTCGAGAGCTGCAATCTACTACCAAACATGTTAGAATTCCAGAATCATGGAAAGAAATCTTGGAACAAGATCTAACTTTGCAGAACCACAAGGCCAAGTTTGATGCTTTGCTGTATATCGAAGAAATGCAGATGGAAGTTGACATCAGACGATATGATATGAAAGATGCTGAAATGACAAAGGAGAGCAACGACCATCTTGGACTCAAGGTACCTGGCCTCGCTGAAAACAGACCTTCTCTTATTCCCGGTGATCGAGTTTATGTTCAGGAAACGAAGAATGGAAAACCAGTGGAACACAGAGAATACGAAGGGTTTATTCATTTTATTGAAGAGGAGAAAATTTTGCTAAAGTTCAAAAACAGCTTCCACGGCAGCTTCATCAAAGGGAAACGCTATCATGTCCGGTTCAGTTTCAATCGCTTGCCGTTAAAACTTCAACACAGAGCACTTAAACTTGCACATGAACTTGTGGAGGCTGGCAGATTTCCCTACTTGGATATAGACACCAAAAATGCATCGAGGGATTTTACTGACCTTAACTTGAGCTTGCATGATATAAAGATTGAGAAGAACGAAGAACAGTACACTGCAGTAAAGAACATTGTCTCTGGCACATCAAAGCCTTTTCCATACATCATATTTGGTCCACCGGGGACTGGGAAAACTGTAACAACAGTGGAAGCTATGAAACAGGTGCTGAAACTACAACCAACAAGTAGAATTCTAGCATGCGCACCATCCAACAGTGCAGCTGATCTCATGTTGGAGAGATTTCTAGATTCATGCCCAATCATGGTAACAGAAGTATTTCGTCTGAATGCATTCAGCAGAGCAATCAAAAGCCTTCCCGAAAAGCTCAAGAAACATTGCAAAATAGTGAAACGGGGATGGAAAGAAGGATTTGACATACCAAGTTGTGCAGAAGTCAAGAACTATCGGCTCGTTGTTTGCACTATGACGACAGCTGGGAGGCTCGTAAGCATGGGAGTTCCTCGAAATCATTTCAGCCACGTTTTCATGGACGAATGTGGCCAGGCGTTGGAACCAGAAGCACTGATACCGCTAGCTGGGTTGCTTGATGGAGGCAATGATGGAGGGCACGCTAATGGCGGGCAACTGGTGCTCGCTGGAGATCCGAAGCAGCTTGGGCCTGTGCTGAGGTCATCCCTTGCAATCAAGTATGGCTTCCAGATGTCACTATTGGAAAGATTGATGCAAAAAGCTTCGAGATATCAACGAATCGATGGTGAATTTGATCAAAATTACATCACAAAATTAGTGAATAACTATCGCTCACATCCTGCTATTCTCAAGGGAATGTTGGTGAGACCTCTCTTAATAAACTCCAAAAGCTACAAAATCGTGCTGCCAGAATAGTTACCGGCAGTCGATATGACCAGTCAGCCTTGCCACTCTTTCGTGCCCTAGGATGGCCCACGGTTAGGGAATTGATTGATCTTGAAACACTAAAAatatgagcgacatgttcaatagagtgaacgaaacaacctctcgcgtacttaggaattctaatataaaccttaggactccaatgttaagaacatcagctggtcagagatgtttttcattcagaggggccagtctctggaatgggttgaatgatgaattaaaaggagcacctactctaaagaaattccgggaagggttgatgaaatcccacaaagcataagttgagatgctttatgcaatgaactcttttaatttta

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF21633 all species →	MOV-10_Ig-like	Helicase MOV-10, Ig-like domain	Domain	Interproscan
PF21634 all species →	MOV-10_beta-barrel	Helicase MOV-10, beta-barrel domain	Domain	Interproscan
PF21635 all species →	Mov-10_helical	Helicase MOV-10, helical domain	Domain	Interproscan
PF13086 all species →	AAA_11	AAA domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR049077 all species →	Domain	Helicase MOV-10, Ig-like domain	Interproscan
IPR049080 all species →	Domain	Helicase MOV-10-like, beta-barrel domain	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR049079 all species →	Domain	Helicase MOV-10, helical domain	Interproscan
IPR041677 all species →	Domain	DNA2/NAM7 helicase, helicase domain	Interproscan
IPR026122 all species →	Domain	Helicase MOV-10/SDE3, DEXXQ/H-box helicase domain	Interproscan
IPR045055 all species →	Family	DNA2/NAM7-like helicase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10887 all species →	DNA2/NAM7 HELICASE FAMILY	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004386 all species →	Molecular Function	helicase activity	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0032574 all species →	Molecular Function	5'-3' RNA helicase activity	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0035194 all species →	Biological Process	regulatory ncRNA-mediated post-transcriptional gene silencing	Interproscan
GO:0043186 all species →	Cellular Component	P granule	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for scaffold417.g5.t2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.