Gene detail

Detailed information of scaffold4190.g2.t1 in Aurelia aurita complex sp. Pacific

Genomic Location: scaffold4190:6152...10964
NR annotation: no NCBI-NR hit recorded
Species Aurelia aurita complex sp. Pacific · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

scaffold4190.g2.t1

tgtttttgaggctctaacttcataaacgagcggaaaggaacttcctgaggcaaatgaaactttattgtctccgaaaaatgttacaaattcttcacgcacatccattatggcatgattttcgtgaaggaaatctctccaagaacaatgttataagcaagtccaactacaactgaagcattacacaaatatgtacagtttacaattaatactggaaaagaaacggcaccagtaacaggaacgctacttccatcggcggttctgacgctatcgagtccttcttgtttcagcaagccatgcgtggcgcgtaaaatgttgttataaaagcgatcactaacaacagtcacagctgctccggtgtcaactaggagtttaaagggttgtttttcgacagttccccagactagtacgtttgtaggaatcaaaggagaatcagtaagatttgacgaaatcgagggaatttcattgttagaagaacaaggtaacttggtggatgcggtcgaggggttatcttgagaacttttaacagtttctctaaaagtctgcgttgattttaccgaaacaggtgacttcgaattatttacattatttacaaactggatattatcatgcgatttgacagtgttcgtctctgcagaaactgtcactgcagaaatcggtttcaaaagtttacgtttttcagcccactgattaagttcattgtcgttttcaaatctgcaaaaattgggatgtactgagctgcttactgtttcttggaccttcactgaccccatttagaaggccctgcaccgtttaaattctgttggttataacctccctgagtataatttccctgattgtaggctccctggctataaggaaatgaccgtggctgctgtggttgttgttgttgcaggaaaaatgcagctggttgttgttgctgctgttgaggtgctgagcgacaataacgcgccacgtgacccgtgaccgactctttggcagttgttacatattggctgcccatctgttgtgcgcaagttgcgcccgcaggcaccagcgtagcctttcttttgttggaagaattttcctttttcgggtttttgtccctccctggcaaactttgcatcaattgcagcaagcatttcatgtttgaacccagagagttccttagaaattgtagacgcatggggcgagaaactttgattttgctcaaacgtgctcgggttcacagaaaatttttccgaaaaaccagatgcaattgcttggattggctgggcagaaacttttgggctatttgactgggatgccattgaaaccagtaaattgacttgccattctaactcttttatacgacttgcctgtgaaatactacgagcggtggctaacaagtcgtgaacactgctgttttttgtgacagcatcgcacaaacgggcaagattttctgctttgtaaaacgtgtctggctggtttaggatcacgtgattttttatctcatctgtcagcccattgatacaaaatattcatcatgtccttgtctgcgatactaggacgttgacactttttgataatatccgcggtaaaaaccgaaagtggctcatttcgaccttgttttcgtgaatagagctcttgacgaaaaatgaactccaggttttgtgctccgaaacgggcttttaaagcatcagtaagagactgaaaattggcaactgtttctgcggtctgtgtatggaaccatgcaagagcgggaccgtccaagagtagagtcattgctccaagttttttcgcatttgaccagttgtaaaactttgcgaaacgatcaaatttcatgagccattcatttatgtcatcgctgggaaaaccgttaaacgagcgagctccatccaaaatggcgaacaacgacgaatatgaagttgacaacgaaacgctcatgaattgcatacaacactatcgggtggtgtacgacaagagctctaaggactttaaagttccattgaaaaaaagaaatgcatggaaagagatcagcgagaagctggggattgaaactgcagaggcccaaaagcgatacaacaacattcgcacaatgttcttgaggtatgtgaaacgtttacgcagtgtcagatctggttcaggtcgcaacgatgtgccacagctgagagaagacctcaaatacctacgatggttagtaactcacatcagacaccgacccagcacgacaaattttaagcggagaacgaccgaagaagttgttcaggcaatgatgtccgaactaaccgataacgaatctggcgaagaagaaacacagattgaggttgatgatattgaggattgttccgtagatctagaaaaaaagacacaggaggaatcagcaacagaaattacttcaggtgataaaccaagcagggtctacatattcaccaactggtttggatgatgaagtaagctcaatcaccacactgtctccagctcctatcttggaattggccccacaatttcctagttcagcatcatcaacatgctctgcctcaccaacgctatctgtcatgggtattgcaaagaagaagaatgttacaacacgcaaaagtctgccctctgcaacccccaaatccaagaagaaagcatggtccaaagaaagtaagccttgtaac

Transcript

scaffold4190.g2.t1

TGTTTTTGAGGCTCTAACTTCATAAACGAGCGGAAAGGAACTTCCTGAGGCAAATGAAACTTTATTGTCTCCGAAAAATGTTACAAATTCTTCACGCACATCCATTATGGCATGATTTTCGTGAAGGAAATCTCTCCAAGAACAATGTTATAAGCAAGTCCAACTACAACTGAAGCATTACACAAATATGTACAGTTTACAATTAATACTGGAAAAGAAACGGCACCAGTAACAGGAACGCTACTTCCATCGGCGGTTCTGACGCTATCGAGTCCTTCTTGTTTCAGCAAGCCATGCGTGGCGCGTAAAATGTTGTTATAAAAGCGATCACTAACAACAGTCACAGCTGCTCCGGTGTCAACTAGGAGTTTAAAGGGTTGTTTTTCGACAGTTCCCCAGACTAGTACGTTTGTAGGAATCAAAGGAGAATCAGTAAGATTTGACGAAATCGAGGGAATTTCATTGTTAGAAGAACAAGGTAACTTGGTGGATGCGGTCGAGGGGTTATCTTGAGAACTTTTAACAGTTTCTCTAAAAGTCTGCGTTGATTTTACCGAAACAGGTGACTTCGAATTATTTACATTATTTACAAACTGGATATTATCATGCGATTTGACAGTGTTCGTCTCTGCAGAAACTGTCACTGCAGAAATCGGTTTCAAAAGTTTACGTTTTTCAGCCCACTGATTAAGTTCATTGTCGTTTTCAAATCTGCAAAAATTGGGATGTACTGAGCTGCTTACTGTTTCTTGGACCTTCACTGACCCCATTTAGAAGGCCCTGCACCGTTTAAATTCTGTTGGTTATAACCTCCCTGAGTATAATTTCCCTGATTGTAGGCTCCCTGGCTATAAGGAAATGACCGTGGCTGCTGTGGTTGTTGTTGTTGCAGGAAAAATGCAGCTGGTTGTTGTTGCTGCTGTTGAGGTGCTGAGCGACAATAACGCGCCACGTGACCCGTGACCGACTCTTTGGCAGTTGTTACATATTGGCTGCCCATCTGTTGTGCGCAAGTTGCGCCCGCAGGCACCAGCGTAGCCTTTCTTTTGTTGGAAGAATTTTCCTTTTTCGGGTTTTTGTCCCTCCCTGGCAAACTTTGCATCAATTGCAGCAAGCATTTCATGTTTGAACCCAGAGAGTTCCTTAGAAATTGTAGACGCATGGGGCGAGAAACTTTGATTTTGCTCAAACGTGCTCGGGTTCACAGAAAATTTTTCCGAAAAACCAGATGCAATTGCTTGGATTGGCTGGGCAGAAACTTTTGGGCTATTTGACTGGGATGCCATTGAAACCAGTAAATTGACTTGCCATTCTAACTCTTTTATACGACTTGCCTGTGAAATACTACGAGCGGTGGCTAACAAGTCGTGAACACTGCTGTTTTTTGTGACAGCATCGCACAAACGGGCAAGATTTTCTGCTTTGTAAAACGTGTCTGGCTGGTTTAGGATCACGTGATTTTTTATCTCATCTGTCAGCCCATTGATACAAAATATTCATCATGTCCTTGTCTGCGATACTAGGACGTTGACACTTTTTGATAATATCCGCGGTAAAAACCGAAAGTGGCTCATTTCGACCTTGTTTTCGTGAATAGAGCTCTTGACGAAAAATGAACTCCAGGTTTTGTGCTCCGAAACGGGCTTTTAAAGCATCAGTAAGAGACTGAAAATTGGCAACTGTTTCTGCGGTCTGTGTATGGAACCATGCAAGAGCGGGACCGTCCAAGAGTAGAGTCATTGCTCCAAGTTTTTTCGCATTTGACCAGTTGTAAAACTTTGCGAAACGATCAAATTTCATGAGCCATTCATTTATGTCATCGCTGGGAAAACCGTTAAACGAGCGAGCTCCATCCAAAATGGCGAACAACGACGAATATGAAGTTGACAACGAAACGCTCATGAATTGCATACAACACTATCGGGTGGTGTACGACAAGAGCTCTAAGGACTTTAAAGTTCCATTGAAAAAAAGAAATGCATGGAAAGAGATCAGCGAGAAGCTGGGGATTGAAACTGCAGAGGCCCAAAAGCGATACAACAACATTCGCACAATGTTCTTGAGGTATGTGAAACGTTTACGCAGTGTCAGATCTGGTTCAGGTCGCAACGATGTGCCACAGCTGAGAGAAGACCTCAAATACCTACGATGGTTAGTAACTCACATCAGACACCGACCCAGCACGACAAATTTTAAGCGGAGAACGACCGAAGAAGTTGTTCAGGCAATGATGTCCGAACTAACCGATAACGAATCTGGCGAAGAAGAAACACAGATTGAGGTTGATGATATTGAGGATTGTTCCGTAGATCTAGAAAAAAAGACACAGGAGGAATCAGCAACAGAAATTACTTCAGGTGATAAACCAAGCAGGGTCTACATATTCACCAACTGGTTTGGATGATGAAGTAAGCTCAATCACCACACTGTCTCCAGCTCCTATCTTGGAATTGGCCCCACAATTTCCTAGTTCAGCATCATCAACATGCTCTGCCTCACCAACGCTATCTGTCATGGGTATTGCAAAGAAGAAGAATGTTACAACACGCAAAAGTCTGCCCTCTGCAACCCCCAAATCCAAGAAGAAAGCATGGTCCAAAGAAAGTAAGCCTTGTAAC

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF10545 all species →	MADF_DNA_bdg	Alcohol dehydrogenase transcription factor Myb/SANT-like	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001606 all species →	Domain	ARID DNA-binding domain	Interproscan
IPR006578 all species →	Domain	MADF domain	Interproscan
IPR039353 all species →	Family	Transcription factor Adf-1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12243 all species →	MADF DOMAIN TRANSCRIPTION FACTOR	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005667 all species →	Cellular Component	transcription regulator complex	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K09068	TAL; T-cell acute lymphocytic leukemia protein	-	Transcription factors	ko03000	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.