Gene detail

Detailed information of scaffold42.g103.t1 in Aurelia aurita

Genomic Location: scaffold42:1458841...1464776
NR annotation: no NCBI-NR hit recorded
Species abbreviation AAURI1 · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

scaffold42.g103.t1

gccgatgtccttgttccaaggatgaacacttgcagtggacagaaagctatatcttttcggggcgcaaagacttggaataatttgcctttggatgtcaaacaagcaccctcccttggcatttttaaaagtaggctgaagagcaatttgcccttctcagcctaactctatttattttttcgatttttatattgactttaaatttgtttactttatgtatgaaataacattgtaactaggggggataatcattggataattgcgtgccaaacgcactttttcttgtctttgtgctaattatctgcgataacatgctgatcaatcacactaatgcgtgggactgacggacggacggactgacggactgacatcgacctcactccttagattacaaacatgaaatttctttttatcgctgtaatgttaggtgctgcaagtgctgttttgcagcagaaagaaccgcatgatgatattgaggtgcctcaagcgttcagtgacatcgacggcctagaaactacatatcaaatggaagaactagaaataatttcagaagagcagggaaaagcatcgcctgaagcacctcaatcaaatgtcctaagaagacgacaccctttgcatttcaacattacattaacatacttcaacatgacccttccactgcgattgtctatgaatacagtgaccacagcaagtaatgtcaagctcatttcatacagtagcaatggcgatcttataatgcaagatgacaatgaagattgttcatattatcaaggaactggcctcttagaaacaccaacaacagctactatgagtctctgtgatgctggcttggaaggtattgtcatcactgaggggaagccattgatgttagagccttcaaagggccacttgcgacgacgaatgataaaccccaggaatgaatttattttaggaccgcattcattaacagcgacggacgcaactgaagccggtaattacacgctggactatgtggagattccagatgatggcacaggtcgggctagattccgtcgcgaaaaccctttgcatttgtctgaaacgaaatacgtagagttgtacttggtcaacgacaaaagcttatttacatatcttggcaacaatctaaaaaacaatttaaaacaaatgaaacgactagctaatctgatagactccttctatcagccgcataacataagagtgatattgaaagcagtggaagtttggcatgatcaagatcgcatacgttttcataggaacgcaggcacaactctgacaaattttttgcggtatcggtataaaaacatttatccaagatttaaaaatgacaacgctatcctctttacccgttttaattttgatggagcccctggaacatacccaggctgctctattcgtaatggtatgtgccatattttttattcaggtagtgtcagccggtacctatactgggctggcgtaggccattatagaacagccattgcagcgacacaccaaatggggcataactttgggatggagcatcacgatccccgcttgtgtatttgtcctgctgcaaattgttttatggaacaattttttgatgttgatagtggtctaattccagatggattctcatcctgcagtgtcaaagaattagagatatacttgaaagcagaactggctgcttgtttgttgaatgtccccgttggtggcttatactacgagcttgagaaatgcgtcacgggcaataatgcaccgtatttgcatgttagaaatgaaagtttgcgttgtgttgtctcttcggcatggcgaatcgaagtgaattgcgcccacgcctcgggtatcctacgcagcgaagtcctcgtttcaaacgaggacatcgctgcgtaggatacgcgaggcgtgggcgcaattcaatatggttaatgcatcttctttttgatttaatggcttgaaaggaacttcaagacctttgctatagtcctatatgtaaactctctgatatcttgattattttcagaattacagcgtcttctttgcttttgccagttttgagaatgtgacgtcatcaaattactaaatcgtaaactagaaa

Transcript

scaffold42.g103.t1

gccgatgtccttgttccaaggatgaacacttgcagtggacagaaagctatatcttttcggggcgcaaagacttggaataatttgcctttggatgtcaaacaagcaccctcccttggcatttttaaaagtaggctgaagagcaatttgcccttctcagcctaactctatttattttttcgatttttatattgactttaaatttgtttactttatgtatgaaataacattgtaactaggggggataatcattggataattgcgtgccaaacgcactttttcttgtctttgtgctaattatctgcgataacatgctgatcaatcacactaatgcgtgggactgacggacggacggactgacggactgacatcgacctcactccttagattacaaaCATGAAATTTCTTTTTATCGCTGTAATGTTAGGTGCTGCAAGTGCTGTTTTGCAGCAGAAAGAACCGCATGATGATATTGAGGTGCCTCAAGCGTTCAGTGACATCGACGGCCTAGAAACTACATATCAAATGGAAGAACTAGAAATAATTTCAGAAGAGCAGGGAAAAGCATCGCCTGAAGCACCTCAATCAAATGTCCTAAGAAGACGACACCCTTTGCATTTCAACATTACATTAACATACTTCAACATGACCCTTCCACTGCGATTGTCTATGAATACAGTGACCACAGCAAGTAATGTCAAGCTCATTTCATACAGTAGCAATGGCGATCTTATAATGCAAGATGACAATGAAGATTGTTCATATTATCAAGGAACTGGCCTCTTAGAAACACCAACAACAGCTACTATGAGTCTCTGTGATGCTGGCTTGGAAGGTATTGTCATCACTGAGGGGAAGCCATTGATGTTAGAGCCTTCAAAGGGCCACTTGCGACGACGAATGATAAACCCCAGGAATGAATTTATTTTAGGACCGCATTCATTAACAGCGACGGACGCAACTGAAGCCGGTAATTACACGCTGGACTATGTGGAGATTCCAGATGATGGCACAGGTCGGGCTAGATTCCGTCGCGAAAACCCTTTGCATTTGTCTGAAACGAAATACGTAGAGTTGTACTTGGTCAACGACAAAAGCTTATTTACATATCTTGGCAACAATCTAAAAAACAATTTAAAACAAATGAAACGACTAGCTAATCTGATAGACTCCTTCTATCAGCCGCATAACATAAGAGTGATATTGAAAGCAGTGGAAGTTTGGCATGATCAAGATCGCATACGTTTTCATAGGAACGCAGGCACAACTCTGACAAATTTTTTGCGGTATCGGTATAAAAACATTTATCCAAGATTTAAAAATGACAACGCTATCCTCTTTACCCGTTTTAATTTTGATGGAGCCCCTGGAACATACCCAGGCTGCTCTATTCGTAATGGTATGTGCCATATTTTTTATTCAGGTAGTGTCAGCCGGTACCTATACTGGGCTGGCGTAGGCCATTATAGAACAGCCATTGCAGCGACACACCAAATGGGGCATAACTTTGGGATGGAGCATCACGATCCCCGCTTGTGTATTTGTCCTGCTGCAAATTGTTTTATGGAACAATTTTTTGATGTTGATAGTGGTCTAATTCCAGATGGATTCTCATCCTGCAGTGTCAAAGAATTAGAGATATACTTGAAAGCAGAACTGGCTGCTTGTTTGTTGAATGTCCCCGTTGGTGGCTTATACTACGAGCTTGAGAAATGCGTCACGGGCAATAATGCACCGTATTTGCATGTTAGAAATGAAAGTTTGCGTTGTGTTGTCTCTTCGGCATGGCGAATCGAAGTGAATTGCGCCCACGCCTCGGGTATCCTACGCAGCGAAGTCCTCGTTTCAAACGAGGACATCGCTGCGTAGGATACGCGAGGCgtgggcgcaattcaatatggttaatgcatcttctttttgatttaatggcttgaaaggaacttcaagacctttgctatagtcctatatgtaaactctctgatatcttgattattttcagaattacagcgtcttctttgcttttgccagttttgagaatgtgacgtcatcaaattactaaatcgtaaactagaaa

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01421 all species →	Reprolysin	Reprolysin (M12B) family zinc metalloprotease	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001590 all species →	Domain	Peptidase M12B, ADAM/reprolysin	Interproscan
IPR024079 all species →	Homologous_superfamily	Metallopeptidase, catalytic domain superfamily	Interproscan
IPR034027 all species →	Domain	Reprolysin domain, adamalysin-type	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11905 all species →	ADAM A DISINTEGRIN AND METALLOPROTEASE DOMAIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004222 all species →	Molecular Function	metalloendopeptidase activity	Interproscan
GO:0006508 all species →	Biological Process	proteolysis	Interproscan
GO:0008237 all species →	Molecular Function	metallopeptidase activity	Interproscan
GO:0006509 all species →	Biological Process	membrane protein ectodomain proteolysis	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for scaffold42.g103.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.