Gene detail

Detailed information of scaffold42.g3.t2 in Aurelia aurita

Genomic Location: scaffold42:20601...38545
NR annotation: no NCBI-NR hit recorded
Species Aurelia aurita · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

scaffold42.g3.t2

ggcgtcgtgttttcaacgtgtagcgtattggtctgttggtattggaatgtgttgacgtaggaaagtgcaagggacattgaacaggaatcagtagttattgtcaacaagcaattagcacgtttcctgagtaaacagccttttatgtagttcaaagagaatagtagtttagttgtcgtcgtactgagatagaagccggacacaaataacagttgtgttttctatcgaggcttaggccctcgggccttgccttcgtgtatctcactccattagcaaagaaccacgattcgttacactggtgacagagggggagtggagtgcagatagttcgacagagagaatataaagtgtcaaattggccaaggtttttgaaagaaagagtatgtagccggactgagcgaagggaacgttggggcgtatcattcgggatcattcgacggcattcgacatcgataagactgcagataaacacgtcacacgccagaaagctgtgaagacaagagtaagtttatacgcaccgaggccctcagtagaaaatcgaaatagcgatgatgtgattttggacgagaaatttacagtttatgtttggtgtaatcgcaatcaaaaatttggtgcgtacgggaatggtagtagctgaaatcaatgtttgagaggagtttgatgactgtctgatcaagcaatggaattgacgtcgttcaggagaagtatgccggatttctaagactgtgtggttgacgtgactttgcagaagtgtataatcaacgagcgatgtttcacggcgaccaacagccgacggaacttttggatactggacactgttttagcggagattcttgcagcgatgagtccagctttgaacgatactcgaagtcttctgtgaaccttcctttgccaatgcttccgagctttttggagttaccgaacattttctttaagttttggagtttagagtattgtggacagtttagggaaacgtcgaaaaattgtgttatgaggataatttaaaagggaggggatggtgtagcgtattggtctgttggtattggaatgtgttgacgtaggaaagtgcaagggacattgaacaggaatcagtagttattgtcaacaagcaattagcacgtttcctgagtaaacagccttttatgtagttcaaagagaatagtagtttagttgtcgtcgtactgagatagaagccggacacaaataacagttgtgttttctatcgaggcttaggccctcgggccttgccttcgtgtatctcactccattagcaaagaaccacgattcgttacaaacgctgctgtgacgtccaatctgattctgtgggtccaaagcatgcaacgctagaagattagcagctggaaagaaaataccaacgtataaagaggaagaagaggttgctatcatagctgaatagcgcaactgcagactgatttaaaaacatgaacaacaagttttacagttctggcaagtaatgcgacgcaagtgtatcagaagccatggaaaatgataatcgtgaaagcaatgtgaataaagcagcttcttctcaacagtgcgttgaatctaacaacatcaaagccatggccgacgaggctccaagctcgtgctgtggggattcaaagaatggttgctcagcacagagtgaggaatctttgaatgatagttgtgatgaagattgctgcaaaagtggcctaaatggagaggatagcgacgtaaagcctgctgctcctagtatgaatggtagccctgatggaatgagtgcagagtgtggtaaaacttgttgtgaacgaggagcaagtaacgaaaacgtggccgatagtgagacgagtgattgtgccgatgattgttgcaaaggggaatcgagcaacgagaacctcaccgacgaaacgaaacatcgcagcgattcttgtggtgattgttgcaacgaagatagctgttcagatgattgctgcgatagtgagaggaaagaagggaatttgattgagattgaggaagatagttgtgctaagaaaagttgttgtagcagcaagaaaagtgatgcggaattgagtagttgcgcagggaaaattgttgataatgaggataaaccaataacgactgtttgttcagctggtagcggtgaggctagcaacacagaagacaaatgctgctcaaaggatgcgaagcaaattaatgaaggagacacttgctcatcaaaaagccagaaagcaagctgttgtaatgaagggaaggatgaaaatgaagggattatcggagctgaaggtgaaaatggaatgaagggaagtgcagctggcaatactggaaaagaaaatgaaagagtcaatgttgagaaaagttgttgtaagaaagagaaggtaaagtgttgtgaagaggaagaagctgggttgaatgttgagagttgttgtgcttcgggaaagagtacttgcaaaggggattccgagaccagtgtcagtgataataagggttctgttggtggaacaggagggagttgttgtgatgggaaaggcaaacaagagagttgctgcggaaattcaaaagcgacttctgttaaagtttgtggtagttcaaatggggttgaaaatggtttgaaaactgatgggagtaagtcttgtgagaagacagagaaggctgtgaaaagttgttgtgcaaattcaaaggcaaaaatttcttgtaagaaaaataaaggagagagttctgatgcttgtgatagtaaattgaagtcagaagatggcctaaatccaatgtcttttaagagagacagccctaagagcgatgaaatcaaaggagttaattggagcccgaaacaaatgaagaagctattaagtgaagtcggtagtgctattggttacggcactatgagttgttgcgacccaaggaacggctcatcgaagaattgtaaaatccacggaaagaagcaatacacagcaatacctagcaacgcggacatagattctacacctcttctcgatacaaccgtaactatttcgccaattgtcgtaatagcaacgacgaaacttcgagtgcagaatatttgctgtggtaaagaagcagaattgatgaagcgtgaacttgaaccgataaaaggcatcgaatccgtatcagtcaatgtcgttggtcgtatcggacttgtccgacacgacactgagacgatatcggctgtagaaatcgttactcttttgaataaactgcacttaggtgtaagtattatggagtctggaaatcatgacgcagagcaaagcctccgtaaagagttcatcatcaagcttgctacaaagtcgagcatacttatagtgttattgatcttatttgtcgtggtgataatcggaaaggttcacaacttgtcgtggcagaaatgggtggcaattgcggagatagcgattggttgtttgccgattatgagaaaagttgtcttgaattggttgaagaagattttcgttgatataaatatgttgatgttgattgcagttgcagggactgttgcgttgcacgaatgggttgaaggtgcaacacttgtctttgtgtttgctgttgccgaagtgttgcaggagtattgcggatacagagtacagaaagcaatatcaggtctcatggtacatattccagagaaggccgtcatagcagagaccgggaaaagtgttcctgttgaagatatcgaaattggcagccgtattatcgtttgtgctggggagaaaatcgcgttagatggtgatgtggtaaaagggcaggcttcagtcgatgagagttctattactggggaatcgatgcctattgaaaaggggcctggagacaagacgtatagtgggactatcgtgcagaatggatatttggagatcgtgacaactagtgacgcagcgaactccactgtttccaaagtaacacagatggtacaagaagcccaagcaaaggcatccaaggcagagaaactgatgaacaaattcgcgaaaatttacacaccgttggtgctggtaattgcattgctgatatttgcgattccagcagtactcgcagaatttaaggttggcaattacgctgctgatcttccttggtggggaaaacgtgcattgtttgttcttctcattgcttgcccctgcgcattagtcatgtcagtacctatgccaatggtgtgcggcatcacagcggctgcaaagaatggagcactggtaaaaggtggaacgcatatggaaaccctcgctggaatcaagactgttgcgtttgataaaactggcacgctgacggaaggcagatttaaagttgtgaatttgcaggagttcggatcggacttgaaatatgatgcgatgctgaaaatgatagcagctttagaagtcaaatcaagtcaccctgtggcagctgctattgtcaaccattattcaggatgcatcacagacaaaattgcttcacttgggtccggagttggtctccctgatgtcaagagttttaaaacactgccagggttaggcctaacaggacgcgtcgattcacgtgctgttgctgttggtaacatgaaaatgctgcaggagtctagtactagtgtgacgtcagaagctgaaagaatatttaatgattggtcttccagtggacagactgtgatattcgcttctattgatggacagctcgccatgatgcttggcctcgcagataccccccgtgcaacagcacgccaagccattcaatttctcaaagacatgaagttaagcacaattatgttgacgggggacagcagtggagcagcagcggctgtaatgaaatccgttggagtcgaagattacatcgcaagcatgaaacccgaacataaactcaactggatacgagaacgccagaaacttacattatcccatgtttgaactgaaattgttagtttctgtaaacagaaattaaatattaccaaaacgt

Transcript

scaffold42.g3.t2

ggcgtcgtgttttcaacgtgtagcgtattggtctgttggtattggaatgtgttgacgtaggaaagtgcaagggacattgaacaggaatcagtagttattgtcaacaagcaattagcacgtttcctgagtaaacagccttttatgtagttcaaagagaatagtagtttagttgtcgtcgtactgagatagaagccggacacaaataacagttgtgttttctatcgaggcttaggccctcgggccttgccttcgtgtatctcactccattagcaaagaaccacgattcgttacactggtgacagagggggagtggagtgcagatagttcgacagagagaatataaagtgtcaaattggccaaggtttttgaaagaaagagtatgtagccggactgagcgaagggaacgttggggcgtatcattcgggatcattcgacggcattcgacatcgataagactgcagataaacacgtcacacgccagaaagctgtgaagacaagagtaagtttatacgcaccgaggccctcagtagaaaatcgaaatagcgatgatgtgattttggacgagaaatttacagtttatgtttggtgtaatcgcaatcaaaaatttggtgcgtacgggaatggtagtagctgaaatcaatgtttgagaggagtttgatgactgtctgatcaagcaatggaattgacgtcgttcaggagaagtatgccggatttctaagactgtgtggttgacgtgactttgcagaagtgtataatcaacgagcgatgtttcacggcgaccaacagccgacggaacttttggatactggacactgttttagcggagattcttgcagcgatgagtccagctttgaacgatactcgaagtcttctgtgaaccttcctttgccaatgcttccgagctttttggagttaccgaacattttctttaagttttggagtttagagtattgtggacagtttagggaaacgtcgaaaaattgtgttatgaggataatttaaaagggaggggatggtgtagcgtattggtctgttggtattggaatgtgttgacgtaggaaagtgcaagggacattgaacaggaatcagtagttattgtcaacaagcaattagcacgtttcctgagtaaacagccttttatgtagttcaaagagaatagtagtttagttgtcgtcgtactgagatagaagccggacacaaataacagttgtgttttctatcgaggcttaggccctcgggccttgccttcgtgtatctcactccattagcaaagaaccacgattcgttacaAACGCTGCTGTGACGtccaatctgattctgtgggtccaaagCATGCAACGCTAGAAGATTAGCAGCTGGAAAGAAAATACCAACGTATAAAGAGGAAGAAGAGGTTGCTATCATAGCTGAATAGCGCAACTGCAGACTGATTTAAAAACATGAACAACAAGTTTTACAGTTCTGGCAAGTAATGCGACGCAAGTGTATCAGAAGCCATGGAAAATGATAATCGTGAAAGCAATGTGAATAAAGCAGCTTCTTCTCAACAGTGCGTTGAATCTAACAACATCAAAGCCATGGCCGACGAGGCTCCAAGCTCGTGCTGTGGGGATTCAAAGAATGGTTGCTCAGCACAGAGTGAGGAATCTTTGAATGATAGTTGTGATGAAGATTGCTGCAAAAGTGGCCTAAATGGAGAGGATAGCGACGTAAAGCCTGCTGCTCCTAGTATGAATGGTAGCCCTGATGGAATGAGTGCAGAGTGTGGTAAAACTTGTTGTGAACGAGGAGCAAGTAACGAAAACGTGGCCGATAGTGAGACGAGTGATTGTGCCGATGATTGTTGCAAAGGGGAATCGAGCAACGAGAACCTCACCGACGAAACGAAACATCGCAGCGATTCTTGTGGTGATTGTTGCAACGAAGATAGCTGTTCAGATGATTGCTGCGATAGTGAGAGGAAAGAAGGGAATTTGATTGAGATTGAGGAAGATAGTTGTGCTAAGAAAAGTTGTTGTAGCAGCAAGAAAAGTGATGCGGAATTGAGTAGTTGCGCAGGGAAAATTGTTGATAATGAGGATAAACCAATAACGACTGTTTGTTCAGCTGGTAGCGGTGAGGCTAGCAACACAGAAGACAAATGCTGCTCAAAGGATGCGAAGCAAATTAATGAAGGAGACACTTGCTCATCAAAAAGCCAGAAAGCAAGCTGTTGTAATGAAGGGAAGGATGAAAATGAAGGGATTATCGGAGCTGAAGGTGAAAATGGAATGAAGGGAAGTGCAGCTGGCAATACTGGAAAAGAAAATGAAAGAGTCAATGTTGAGAAAAGTTGTTGTAAGAAAGAGAAGGTAAAGTGTTGTGAAGAGGAAGAAGCTGGGTTGAATGTTGAGAGTTGTTGTGCTTCGGGAAAGAGTACTTGCAAAGGGGATTCCGAGACCAGTGTCAGTGATAATAAGGGTTCTGTTGGTGGAACAGGAGGGAGTTGTTGTGATGGGAAAGGCAAACAAGAGAGTTGCTGCGGAAATTCAAAAGCGACTTCTGTTAAAGTTTGTGGTAGTTCAAATGGGGTTGAAAATGGTTTGAAAACTGATGGGAGTAAGTCTTGTGAGAAGACAGAGAAGGCTGTGAAAAGTTGTTGTGCAAATTCAAAGGCAAAAATTTCTTGTAAGAAAAATAAAGGAGAGAGTTCTGATGCTTGTGATAGTAAATTGAAGTCAGAAGATGGCCTAAATCCAATGTCTTTTAAGAGAGACAGCCCTAAGAGCGATGAAATCAAAGGAGTTAATTGGAGCCCGAAACAAATGAAGAAGCTATTAAGTGAAGTCGGTAGTGCTATTGGTTACGGCACTATGAGTTGTTGCGACCCAAGGAACGGCTCATCGAAGAATTGTAAAATCCACGGAAAGAAGCAATACACAGCAATACCTAGCAACGCGGACATAGATTCTACACCTCTTCTCGATACAACCGTAACTATTTCGCCAATTGTCGTAATAGCAACGACGAAACTTCGAGTGCAGAATATTTGCTGTGGTAAAGAAGCAGAATTGATGAAGCGTGAACTTGAACCGATAAAAGGCATCGAATCCGTATCAGTCAATGTCGTTGGTCGTATCGGACTTGTCCGACACGACACTGAGACGATATCGGCTGTAGAAATCGTTACTCTTTTGAATAAACTGCACTTAGGTGTAAGTATTATGGAGTCTGGAAATCATGACGCAGAGCAAAGCCTCCGTAAAGAGTTCATCATCAAGCTTGCTACAAAGTCGAGCATACTTATAGTGTTATTGATCTTATTTGTCGTGGTGATAATCGGAAAGGTTCACAACTTGTCGTGGCAGAAATGGGTGGCAATTGCGGAGATAGCGATTGGTTGTTTGCCGATTATGAGAAAAGTTGTCTTGAATTGGTTGAAGAAGATTTTCGTTGATATAAATATGTTGATGTTGATTGCAGTTGCAGGGACTGTTGCGTTGCACGAATGGGTTGAAGGTGCAACACTTGTCTTTGTGTTTGCTGTTGCCGAAGTGTTGCAGGAGTATTGCGGATACAGAGTACAGAAAGCAATATCAGGTCTCATGGTACATATTCCAGAGAAGGCCGTCATAGCAGAGACCGGGAAAAGTGTTCCTGTTGAAGATATCGAAATTGGCAGCCGTATTATCGTTTGTGCTGGGGAGAAAATCGCGTTAGATGGTGATGTGGTAAAAGGGCAGGCTTCAGTCGATGAGAGTTCTATTACTGGGGAATCGATGCCTATTGAAAAGGGGCCTGGAGACAAGACGTATAGTGGGACTATCGTGCAGAATGGATATTTGGAGATCGTGACAACTAGTGACGCAGCGAACTCCACTGTTTCCAAAGTAACACAGATGGTACAAGAAGCCCAAGCAAAGGCATCCAAGGCAGAGAAACTGATGAACAAATTCGCGAAAATTTACACACCGTTGGTGCTGGTAATTGCATTGCTGATATTTGCGATTCCAGCAGTACTCGCAGAATTTAAGGTTGGCAATTACGCTGCTGATCTTCCTTGGTGGGGAAAACGTGCATTGTTTGTTCTTCTCATTGCTTGCCCCTGCGCATTAGTCATGTCAGTACCTATGCCAATGGTGTGCGGCATCACAGCGGCTGCAAAGAATGGAGCACTGGTAAAAGGTGGAACGCATATGGAAACCCTCGCTGGAATCAAGACTGTTGCGTTTGATAAAACTGGCACGCTGACGGAAGGCAGATTTAAAGTTGTGAATTTGCAGGAGTTCGGATCGGACTTGAAATATGATGCGATGCTGAAAATGATAGCAGCTTTAGAAGTCAAATCAAGTCACCCTGTGGCAGCTGCTATTGTCAACCATTATTCAGGATGCATCACAGACAAAATTGCTTCACTTGGGTCCGGAGTTGGTCTCCCTGATGTCAAGAGTTTTAAAACACTGCCAGGGTTAGGCCTAACAGGACGCGTCGATTCACGTGCTGTTGCTGTTGGTAACATGAAAATGCTGCAGGAGTCTAGTACTAGTGTGACGTCAGAAGCTGAAAGAATATTTAATGATTGGTCTTCCAGTGGACAGACTGTGATATTCGCTTCTATTGATGGACAGCTCGCCATGATGCTTGGCCTCGCAGATACCCCCCGTGCAACAGCACGCCAAGCCATTCAATTTCTCAAAGACATGAAGTTAAGCACAATTATGTTGACGGGGGACAGCAGTGGAGCAGCAGCGGCTGTAATGAAATCCGTTGGAGTCGAAGATTACATCGCAAGCATGAAACCCGAACATAAACTCAACTGGATACGAGAACGCCAGAAACTTACATTATCCCATGTTTGAACTGAAATTGTTAGTTTCTGTAAACAGAAATTAAATATTACCAAAACGT

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00122 all species →	E1-E2_ATPase	E1-E2 ATPase	Family	Interproscan
PF00702 all species →	Hydrolase	haloacid dehalogenase-like hydrolase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR023298 all species →	Homologous_superfamily	P-type ATPase, transmembrane domain superfamily	Interproscan
IPR018303 all species →	PTM	P-type ATPase, phosphorylation site	Interproscan
IPR051014 all species →	Family	Cation Transport ATPase Type IB	Interproscan
IPR023299 all species →	Homologous_superfamily	P-type ATPase, cytoplasmic domain N	Interproscan
IPR001757 all species →	Family	P-type ATPase	Interproscan
IPR027256 all species →	Family	P-type ATPase, subfamily IB	Interproscan
IPR036163 all species →	Homologous_superfamily	Heavy metal-associated domain superfamily	Interproscan
IPR036412 all species →	Homologous_superfamily	HAD-like superfamily	Interproscan
IPR023214 all species →	Homologous_superfamily	HAD superfamily	Interproscan
IPR006121 all species →	Domain	Heavy metal-associated domain, HMA	Interproscan
IPR008250 all species →	Homologous_superfamily	P-type ATPase, A domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR48085 all species →	CADMIUM/ZINC-TRANSPORTING ATPASE HMA2-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0022857 all species →	Molecular Function	transmembrane transporter activity	Interproscan
GO:0055085 all species →	Biological Process	transmembrane transport	Interproscan
GO:0000166 all species →	Molecular Function	nucleotide binding	Interproscan
GO:0005215 all species →	Molecular Function	transporter activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0016887 all species →	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0006812 all species →	Biological Process	monoatomic cation transport	Interproscan
GO:0019829 all species →	Molecular Function	ATPase-coupled monoatomic cation transmembrane transporter activity	Interproscan
GO:0046872 all species →	Molecular Function	metal ion binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for scaffold42.g3.t2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.