Gene detail

Detailed information of scaffold4231.g1.t1 in Aurelia aurita complex sp. Pacific

Genomic Location: scaffold4231:1...2594
NR annotation: no NCBI-NR hit recorded
Species Aurelia aurita complex sp. Pacific · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

scaffold4231.g1.t1

cgcgcgggggtagggtctggccatgacagcttctcctcgattcattcacctgcgtacccacaccgaatactctctgctggagggggccgttcggctgaagaaactgccggatctgtgcacgaccaatcagatgcccgcaatcgcggtcaccgataccaattcgatgttcgcagcactggaattttccgtgacgctctcgggggcagggattcagcccatcatcggctgtcaggtcgatctgacctttgaaaagagcgatcccggcgaaaagccgaagtttcccgcgccagtggttctgttggcgcagaatgaagcgggctatgagcatttgatgcggttgtcctcgtgcctctatgtgaacaacggcgggcagttgccgcaggtctcgcttgaggagcttgaggccaattccgctggtttaatctgcctcactggtgggccggaggggccgatcggcaaactgctgcagcagggacaacgccccgccgctgaggcattgatgcagcgcctgaaagagatgttcccggaccgcctttatgtagagctgcagcgccatccgggcgaggacggccagcctgaggcggaaacgctgaccgagcggggccatgtggagatggcctacgcgatggatctgcccttggtggcgaccaatgacgtctattttcccaaaacagagatgtacgaggcgcatgatgcgctgatctgtattgctgaaggcgcctatgtcgatcaggcggaaccacgtcgccgcctgaccgcacaacattatttcaaaagccaagaggagatgatcgcgctttttgccgatcttccggaagcgattgaaaatacggtggaaatcgcgcaacgctgtgctttcatggcctatcgccgtgatccgattttgccgaagtttgccgatgacgaggtggatgaattgaggcgccaggccaatgagggcctgcagcagcgcctcgcggtgatccctcatgcggtgccagttgagaaatatcaggagcggctggattttgagctgggtatcattgagagcatgggattccctggctatttcctgatcgttgcagactttatcaaatggggcaaggagcagggtatcccggtggggccggggcggggctccggtgcgggttcgctggtggcgtatgcactgaccattacggaccttgatccgctgcgctacagcctgctgtttgaacgcttcttgaacccggaacgggtttccatgcccgacttcgacatcgacttctgcatggatcgccgcgaagaagtgatcaaatacgtgcagcagaaatacggccgcgacaaggtggggcagatcatcacctttggtgcgctcttgtccaaggctgcggtgcgcgacattggccgggtactgcagatgccctttggtcaggtggatcgcctctcaaagatgattccggtcgaaggcgttaaacccgtctccattgaaaaagccctgcaggatgagccgcggctggcggaagaggcgcgcaatgaaccggtagtggaccggctgctgacctatggtcagcaagtggaggggctgctgcgcaatgcctccacccacgcagcgggggttgtgatcggcgaccggcctctggatgcgctggtgccgctctatcaggatccgcgttccgacatgcctgcgacccagttcaatatgaaatgggtggagcaggctggactggtgaagttcgacttccttggcctcaagacgctgaccgtgattgaaaacgcgatgaagctgattttcaaatcgggacgggatctacatatcggggcggacgggaccgagctttatgaacccgcagagggggcggaaaaccagatcaacttgatcccactggatgacgaggtgacctataacctctattcgcgcgccaagacggtggcggtgtttcaggtggaatccaccggcatgatggatgcgctgaagcgcatgaaacccacctgtatcgaggacatcgtggcgcttgtggcgctttatcgtcctggtccgatggaaaatattccagtctattgcgaggtcaaaaatggcctgcgcaagatcacctcggtgcatccgctgatcgaccatatccttgaggaaactcaaggtattatcgtttatcaggaacaggtgatgcagatcgcgcaggttatggcgggctatagccttggtggtgcggacctgttgcgtcgtgcgatgggtaaaaagatcaaagaggcgatggacgccgagcgcccgaaatttgagaagggcgcggcagaaaacggcgtcgacaagaaaaaggcctcggaggtttttgaccttctggagaaattcgccaactacggctttaacaaatcccacgcggcagcctatgcggtcgtgtcctatcaaaccgcgtggctgaaagcgaaccacccggtggaattcatggcgggcgtcatgaactgcgatattcacctcacggaaaagctcgcgatctactttgaggaagtgaagaaagggcttcagcttccgtacgcagcgccagacatcaaccgctcgcttgcgacctttgatgtggtcgacg

Transcript

scaffold4231.g1.t1

CGCGCGGGGGTAGGGTCTGGCCATGACAGCTTCTCCTCGATTCATTCACCTGCGTACCCACACCGAATACTCTCTGCTGGAGGGGGCCGTTCGGCTGAAGAAACTGCCGGATCTGTGCACGACCAATCAGATGCCCGCAATCGCGGTCACCGATACCAATTCGATGTTCGCAGCACTGGAATTTTCCGTGACGCTCTCGGGGGCAGGGATTCAGCCCATCATCGGCTGTCAGGTCGATCTGACCTTTGAAAAGAGCGATCCCGGCGAAAAGCCGAAGTTTCCCGCGCCAGTGGTTCTGTTGGCGCAGAATGAAGCGGGCTATGAGCATTTGATGCGGTTGTCCTCGTGCCTCTATGTGAACAACGGCGGGCAGTTGCCGCAGGTCTCGCTTGAGGAGCTTGAGGCCAATTCCGCTGGTTTAATCTGCCTCACTGGTGGGCCGGAGGGGCCGATCGGCAAACTGCTGCAGCAGGGACAACGCCCCGCCGCTGAGGCATTGATGCAGCGCCTGAAAGAGATGTTCCCGGACCGCCTTTATGTAGAGCTGCAGCGCCATCCGGGCGAGGACGGCCAGCCTGAGGCGGAAACGCTGACCGAGCGGGGCCATGTGGAGATGGCCTACGCGATGGATCTGCCCTTGGTGGCGACCAATGACGTCTATTTTCCCAAAACAGAGATGTACGAGGCGCATGATGCGCTGATCTGTATTGCTGAAGGCGCCTATGTCGATCAGGCGGAACCACGTCGCCGCCTGACCGCACAACATTATTTCAAAAGCCAAGAGGAGATGATCGCGCTTTTTGCCGATCTTCCGGAAGCGATTGAAAATACGGTGGAAATCGCGCAACGCTGTGCTTTCATGGCCTATCGCCGTGATCCGATTTTGCCGAAGTTTGCCGATGACGAGGTGGATGAATTGAGGCGCCAGGCCAATGAGGGCCTGCAGCAGCGCCTCGCGGTGATCCCTCATGCGGTGCCAGTTGAGAAATATCAGGAGCGGCTGGATTTTGAGCTGGGTATCATTGAGAGCATGGGATTCCCTGGCTATTTCCTGATCGTTGCAGACTTTATCAAATGGGGCAAGGAGCAGGGTATCCCGGTGGGGCCGGGGCGGGGCTCCGGTGCGGGTTCGCTGGTGGCGTATGCACTGACCATTACGGACCTTGATCCGCTGCGCTACAGCCTGCTGTTTGAACGCTTCTTGAACCCGGAACGGGTTTCCATGCCCGACTTCGACATCGACTTCTGCATGGATCGCCGCGAAGAAGTGATCAAATACGTGCAGCAGAAATACGGCCGCGACAAGGTGGGGCAGATCATCACCTTTGGTGCGCTCTTGTCCAAGGCTGCGGTGCGCGACATTGGCCGGGTACTGCAGATGCCCTTTGGTCAGGTGGATCGCCTCTCAAAGATGATTCCGGTCGAAGGCGTTAAACCCGTCTCCATTGAAAAAGCCCTGCAGGATGAGCCGCGGCTGGCGGAAGAGGCGCGCAATGAACCGGTAGTGGACCGGCTGCTGACCTATGGTCAGCAAGTGGAGGGGCTGCTGCGCAATGCCTCCACCCACGCAGCGGGGGTTGTGATCGGCGACCGGCCTCTGGATGCGCTGGTGCCGCTCTATCAGGATCCGCGTTCCGACATGCCTGCGACCCAGTTCAATATGAAATGGGTGGAGCAGGCTGGACTGGTGAAGTTCGACTTCCTTGGCCTCAAGACGCTGACCGTGATTGAAAACGCGATGAAGCTGATTTTCAAATCGGGACGGGATCTACATATCGGGGCGGACGGGACCGAGCTTTATGAACCCGCAGAGGGGGCGGAAAACCAGATCAACTTGATCCCACTGGATGACGAGGTGACCTATAACCTCTATTCGCGCGCCAAGACGGTGGCGGTGTTTCAGGTGGAATCCACCGGCATGATGGATGCGCTGAAGCGCATGAAACCCACCTGTATCGAGGACATCGTGGCGCTTGTGGCGCTTTATCGTCCTGGTCCGATGGAAAATATTCCAGTCTATTGCGAGGTCAAAAATGGCCTGCGCAAGATCACCTCGGTGCATCCGCTGATCGACCATATCCTTGAGGAAACTCAAGGTATTATCGTTTATCAGGAACAGGTGATGCAGATCGCGCAGGTTATGGCGGGCTATAGCCTTGGTGGTGCGGACCTGTTGCGTCGTGCGATGGGTAAAAAGATCAAAGAGGCGATGGACGCCGAGCGCCCGAAATTTGAGAAGGGCGCGGCAGAAAACGGCGTCGACAAGAAAAAGGCCTCGGAGGTTTTTGACCTTCTGGAGAAATTCGCCAACTACGGCTTTAACAAATCCCACGCGGCAGCCTATGCGGTCGTGTCCTATCAAACCGCGTGGCTGAAAGCGAACCACCCGGTGGAATTCATGGCGGGCGTCATGAACTGCGATATTCACCTCACGGAAAAGCTCGCGATCTACTTTGAGGAAGTGAAGAAAGGGCTTCAGCTTCCGTACGCAGCGCCAGACATCAACCGCTCGCTTGCGACCTTTGATGTGGTCGACG

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF17657 all species →	DNA_pol3_finger	Bacterial DNA polymerase III alpha subunit finger domain	Domain	Interproscan
PF07733 all species →	DNA_pol3_alpha	Bacterial DNA polymerase III alpha NTPase domain	Domain	Interproscan
PF02811 all species →	PHP	PHP domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR040982 all species →	Domain	DNA polymerase III alpha subunit finger domain	Interproscan
IPR016195 all species →	Homologous_superfamily	Polymerase/histidinol phosphatase-like	Interproscan
IPR049821 all species →	Domain	DnaE1-like, PHP domain	Interproscan
IPR004805 all species →	Family	Error-prone DNA polymerase/DNA polymerase III subunit alpha DnaE/PolC	Interproscan
IPR041931 all species →	Homologous_superfamily	Bacterial DNA polymerase III alpha subunit, thumb domain	Interproscan
IPR011708 all species →	Domain	Bacterial DNA polymerase III, alpha subunit, NTPase domain	Interproscan
IPR004013 all species →	Domain	PHP domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR32294 all species →	DNA POLYMERASE III SUBUNIT ALPHA	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006260 all species →	Biological Process	DNA replication	Interproscan
GO:0008408 all species →	Molecular Function	3'-5' exonuclease activity	Interproscan
GO:0003824 all species →	Molecular Function	catalytic activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K02337	dnaE; DNA polymerase III subunit alpha	EC:2.7.7.7	DNA repair and recombination proteins	ko03400	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.