Gene detail

Detailed information of scaffold429.g10.t2 in Aurelia aurita complex sp. Pacific

Genomic Location: scaffold429:189986...218414
NR annotation: no NCBI-NR hit recorded
Species Aurelia aurita complex sp. Pacific · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

scaffold429.g10.t2

ccacaatgcatgtgttacatcgatttgaatgagatatttttagattgtttttgcgctttgtaaatgcaagctttcaaccttgcacaaagcctttaacatgaagccataaccgtaggcaacaagtacttgtcatccccactccccctatttgatgttggatttgatgtttcaagttcattttggccaatattgagccaggggtgtggaaatccgctcttgaaggagaaatttatgaattgtttgaataattttttgagtttttgcaatgattgtatatgcaatgtatcttttttttattgttagctatttcatattgcgaggagtaccttacacaaaacttcaatatttccaatgcaacagagcccgttgaagatgaaataaccgaagggccatcaccagctgagattgaatctgctaaaaaggcatggaaagccgggaggaacggcattgggataccgcgcaaatacgatgctccagtgttaccacgaaatggtgaaaagaatctgctgattactagtgcgttaccctatgtaaacaatgtgcctcatcttggtaacatcatcggctgtgttcttagcggagacgtatatgcgagattttgccgtttacgaaattacaacatcctttatatttgcgggacagacgagtatggaactgctacagaaacgaaggctattgaagagggtctgacgccaaagcaaatctgcgacaaatatcacaagatacatgctgatatttacaaatggtttaatattgaatttgattattttggaagaaccactacagaagagcaaacaaaaattgcacaagacatcttttggaagatagacaagaacaagttttcactacaggatagtcttgagcaactgcagtgtattaaatgtgacaggtttcttgctgacagattcgttgagggaacatgtccattttgtgcttatgaggatgctcgtggagaccaatgcgatgcttgtggaaagttaatcaatgcgattgaattgaagtctcctaggtgcaaaatgtgtgggacacagccaaaagtaagatcaagcaaacacattttcctcgaccttccaaagattgagtcacaacttaagaaatgggtggaggagtccattgataaaggtaactggacagcaaatgcacgtcacattaccaaaggatggttacaagaaggactgaagcctagatgtattacacgtgatctgaagtggggcacgcctgtcccaatggaaggctttaaagacaaagtgttttatgtatggtttgatgcaccaattgggtatctttcaattactgcaaattacactgagcactgggagaaatggtggaaaaatcccgaccaggtcaggctggttcagttcatggcaaaagataatgtaccattccatacagtcgtattcccatgctcgttactagcatctgatgacaattacactttgctaaatgacattagtgcaactgaatatctaaactacgaagatgacaaattctcaaaaagcagaggtgttggtgtatttggagataacgcagaacaaactgggatacctgcagatattttcagattctacttactgtttttgaggcctgaaaatcaggatagtgctttcagttgggcagattttgtcgtgcgaaacaactcggaactgctcaataaccttggtaactttatcaacaggtcgctcatgtttctaaagaacagcttcaacagtagtatacaagaaatcgatttgaatgaagatgacgagatcttcttggcttcgattaatcgggatttgaaatcttacgttgacagccttgaaaagatcaagttgagagatggtctcaagtacattcttagcatgtcgaaagttggaaaccagtatatgcaagtaaacaagccttgggtccttgtgaaaggaaatgataaagagaaagctcgagctggcacagttattagtttggcttgcaatctttcagctctgttagcggtccttgttaaaccatacatgccgaagattagtgaagaaatttgtaaccaaacacagctttcttctgatttcctcatcgtcgttgagtcttttataccaatgcttcctgctggtcataaaattggaacccccagtcctctcttccagaagattgatgcctcttttggtgatgaaatgaaggccaaattcgcagggagaaggaaaccagcatctgaggtaaggctttcaaaatgattttttctcctcgtttttgattacaaagtccactttgtaatctaagaaggggcttcgatgtcagtcagtgagaaagaaagaaagaaagaaagaaagtaagtaagtaacc

Transcript

scaffold429.g10.t2

CCACAATGCATGTGTTACATCGATTTGAATGAGATATTTTTAGATTGTTTTTGCGCTTTGTAAATGCAAGCTTTCAACCTTGCACAAAGCCTTTAACATGAAGCCATAACCGTAGGCAACAAGTACTTGTCATCCCCACTCCCCCTATTTGATGTTGGATTTGATGTTTCAAGTTCATTTTGGCCAATATTGAGCCAGGGGTGTGGAAATCCGCTCTTGAAGGAGAAATTTATGAATTGTTTGAATAATTTTTTGAGTTTTTGCAATGATTGTATATGCAATGTATCTTTTTTTTATTGTTAGCTATTTCATATTGCGAGGAGTACCTTACACAAAACTTCAATATTTCCAATGCAACAGAGCCCGTTGAAGATGAAATAACCGAAGGGCCATCACCAGCTGAGATTGAATCTGCTAAAAAGGCATGGAAAGCCGGGAGGAACGGCATTGGGATACCGCGCAAATACGATGCTCCAGTGTTACCACGAAATGGTGAAAAGAATCTGCTGATTACTAGTGCGTTACCCTATGTAAACAATGTGCCTCATCTTGGTAACATCATCGGCTGTGTTCTTAGCGGAGACGTATATGCGAGATTTTGCCGTTTACGAAATTACAACATCCTTTATATTTGCGGGACAGACGAGTATGGAACTGCTACAGAAACGAAGGCTATTGAAGAGGGTCTGACGCCAAAGCAAATCTGCGACAAATATCACAAGATACATGCTGATATTTACAAATGGTTTAATATTGAATTTGATTATTTTGGAAGAACCACTACAGAAGAGCAAACAAAAATTGCACAAGACATCTTTTGGAAGATAGACAAGAACAAGTTTTCACTACAGGATAGTCTTGAGCAACTGCAGTGTATTAAATGTGACAGGTTTCTTGCTGACAGATTCGTTGAGGGAACATGTCCATTTTGTGCTTATGAGGATGCTCGTGGAGACCAATGCGATGCTTGTGGAAAGTTAATCAATGCGATTGAATTGAAGTCTCCTAGGTGCAAAATGTGTGGGACACAGCCAAAAGTAAGATCAAGCAAACACATTTTCCTCGACCTTCCAAAGATTGAGTCACAACTTAAGAAATGGGTGGAGGAGTCCATTGATAAAGGTAACTGGACAGCAAATGCACGTCACATTACCAAAGGATGGTTACAAGAAGGACTGAAGCCTAGATGTATTACACGTGATCTGAAGTGGGGCACGCCTGTCCCAATGGAAGGCTTTAAAGACAAAGTGTTTTATGTATGGTTTGATGCACCAATTGGGTATCTTTCAATTACTGCAAATTACACTGAGCACTGGGAGAAATGGTGGAAAAATCCCGACCAGGTCAGGCTGGTTCAGTTCATGGCAAAAGATAATGTACCATTCCATACAGTCGTATTCCCATGCTCGTTACTAGCATCTGATGACAATTACACTTTGCTAAATGACATTAGTGCAACTGAATATCTAAACTACGAAGATGACAAATTCTCAAAAAGCAGAGGTGTTGGTGTATTTGGAGATAACGCAGAACAAACTGGGATACCTGCAGATATTTTCAGATTCTACTTACTGTTTTTGAGGCCTGAAAATCAGGATAGTGCTTTCAGTTGGGCAGATTTTGTCGTGCGAAACAACTCGGAACTGCTCAATAACCTTGGTAACTTTATCAACAGGTCGCTCATGTTTCTAAAGAACAGCTTCAACAGTAGTATACAAGAAATCGATTTGAATGAAGATGACGAGATCTTCTTGGCTTCGATTAATCGGGATTTGAAATCTTACGTTGACAGCCTTGAAAAGATCAAGTTGAGAGATGGTCTCAAGTACATTCTTAGCATGTCGAAAGTTGGAAACCAGTATATGCAAGTAAACAAGCCTTGGGTCCTTGTGAAAGGAAATGATAAAGAGAAAGCTCGAGCTGGCACAGTTATTAGTTTGGCTTGCAATCTTTCAGCTCTGTTAGCGGTCCTTGTTAAACCATACATGCCGAAGATTAGTGAAGAAATTTGTAACCAAACACAGCTTTCTTCTGATTTCCTCATCGTCGTTGAGTCTTTTATACCAATGCTTCCTGCTGGTCATAAAATTGGAACCCCCAGTCCTCTCTTCCAGAAGATTGATGCCTCTTTTGGTGATGAAATGAAGGCCAAATTCGCAGGGAGAAGGAAACCAGCATCTGAGGTAAGGCTTTCAAAATGATTTTTTCTCctcgtttttgattacaaagtccactttgtaatctaagaaggggcttcgatgtcagtcagtgagaaagaaagaaagaaagaaagaaagtaagtaagtaacc

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF19303 all species →	Anticodon_3	Anticodon binding domain of methionyl tRNA ligase	Domain	Interproscan
PF09334 all species →	tRNA-synt_1g	tRNA synthetases class I (M)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR041872 all species →	Domain	Methionyl-tRNA synthetase, anticodon-binding domain	Interproscan
IPR033911 all species →	Domain	Methioninyl-tRNA synthetase core domain	Interproscan
IPR009080 all species →	Homologous_superfamily	Aminoacyl-tRNA synthetase, class Ia, anticodon-binding	Interproscan
IPR014758 all species →	Family	Methionyl-tRNA synthetase	Interproscan
IPR023458 all species →	Family	Methionine-tRNA ligase, type 1	Interproscan
IPR001412 all species →	Conserved_site	Aminoacyl-tRNA synthetase, class I, conserved site	Interproscan
IPR014729 all species →	Homologous_superfamily	Rossmann-like alpha/beta/alpha sandwich fold	Interproscan
IPR015413 all species →	Domain	Methionyl/Leucyl tRNA synthetase	Interproscan
IPR029038 all species →	Homologous_superfamily	Methionyl-tRNA synthetase, Zn-domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45765 all species →	METHIONINE--TRNA LIGASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004825 all species →	Molecular Function	methionine-tRNA ligase activity	Interproscan
GO:0006431 all species →	Biological Process	methionyl-tRNA aminoacylation	Interproscan
GO:0000166 all species →	Molecular Function	nucleotide binding	Interproscan
GO:0004812 all species →	Molecular Function	aminoacyl-tRNA ligase activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0006418 all species →	Biological Process	tRNA aminoacylation for protein translation	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0017101 all species →	Cellular Component	aminoacyl-tRNA synthetase multienzyme complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01874	MARS, metG; methionyl-tRNA synthetase	EC:6.1.1.10	Transfer RNA biogenesis	ko03016	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.