Gene detail

Detailed information of scaffold43.g119.t3 in Aurelia aurita

Genomic Location: scaffold43:1411618...1447819
NR annotation: no NCBI-NR hit recorded
Species abbreviation AAURI1 · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

scaffold43.g119.t3

aacgtttatccctgcctacagagatctcaaagttgttcagatttcatgtggagctgcccattgcttggcattaaccgcatgtggcagagtatattcatggggtgacaataaaaatggacaactcggacatggaaagactggcagaaagaaagttgaatttcctacggaaattggagccctttcaaatctcccagtttacatggttgttgctggaggaagtcacagtattgtaatgactgtttcagggacattgtttgtatggggtaaaaacagttttggccagcttggcgtaggagatatagatgatcgagatgttcctactctagttacttcgttgcgaacaaagggtgtaagatatgttgcctgtggagaggaacacacagcagtcctaacaaagtcaggtcgagttttcacgtttggctatggtgttactggacagttaggtcatggtcgtccggagaacgaatctaaccctaagcagattttagagctcactggagatatggtcacacagatcgcctgtggaaggtggcatactctagcatacatcgaaagcagtggcaggctatattcgttcggaatgaacaaagagggacaacttggcaacggctgcttggaagcgcaagtgacacctactgttgtggtcggagaatggaaaaaatatttacggcaaaatacaaataacatttctgatgataaggtgctccttgctgatcgtcaagaaaataatttatttgaaagaacgaacaagagaattggcaatcaattttttatacaaaagatattttctgggggaagccaaaattttgtacttttagagcaacagaagagccagatctatccactggacatgcgaaatattcatcttaacgatcaaacaacaacattcctaactgcttcaaaagttgacaatttagcgaaacaatacaacgatgaggggaatgaggagtcaaggaaacaagcacttgatgttatctcgactgttttttcgtcacctagttgtctcaatggatcattcctagatctggagaagcatgagcaaactggactacagaatcacggcttgaacatggactgtatcgtcaaaggaaaacatgaagaagcagaagttcacgtcagactgatgcttctgagattactgaactacagacccattcgggaaaagatcgataaaaacataaatgatttactgaagaatttacgaaagatgccaccagatctggaatcccttagagtttatttactgctgccagaaattgcattatatgaagaaccattcaatcgttattcgtacattgctgaggtcggagaaaagatacttgaattggatacagatgcgcagaggattttatgtgtatggtggtccaggttacctgctactctcttttcaaaaatcataacggccttcaagagctgtgttaaagacgtgatgaaagacttccagtcaatgcagactgcgcatgagaaatggaagaacgtgcaaatttcgctgtttgtcttgcagatactaaacaaggtgaatgatgaagcgaattttataattccatatgaagcattctacatccccattatacaacaaaaagttgacatctcattggactaccggatgttacttcatcatccaggaccagattcattttgtttttgtcgcttccctttcacactcgatgttcaagcaaaatcgcaaattattcaaacggatgctgatttaaaaatgaagagagctattgacaagagcatggctgagaattttcaagctcaaatgctgaatatgttaccacagaacaatccattccttgtgtttcacatcagacgtaattgccttgttcaagatactttgagacacatcgaaaacgttcgacatggcataacaacgcgcagtgataaagaggcgagaggagaattcatgaaacccttgaaaatcgttttcgaaggtgaagaaggcattgatgctggcggaccgaaaaaggagtttttcttgcttctaactgaaaagatatttggcaaagaatatggaatgttcactggaaatgaaagttccatgagtgtatggttcaacccccagtcatttgaagaacctcacatgtattacctgattggtgtaatctgtggactggctttatataactcgataatcatcgatgtacattttccacctgtgttatacaagaagcttttaggccaggagccgaatttggaagattttcgtggctttgatcctgattatgcaagggagccgaatttggaagattttcgtggctttgatcctgattatgcaagagcattggaatatcttcttaattacgaagagcagtatgaaggtgctattgaagaaatatttggacagaattttcagcgaatggaagaaagctatggagagaaaataattgtgaatttaattgacgatggtgctaatacttacgtgaagaaagagaacaggaagcagtacgtgagcctcgtcgttgactacatcttaacgaaatcaatctcaactcaatatgaagaatttcgcaaaggcttcttcagtgtttgtgacattgatatactgggcattctacggcctaaagagctgatggaaatgatttcagggtgtgaagattacgacgatttcacgctactcaaagagggtgctaaatacgaaggagaatatcatgaaaatcatcctgtcattgtcaacttttggaatgtattggagaatttcgatgttgacttgaaaaagaaatttttagagacatcaatggattagccctaatataggctgtgaatatgt

Transcript

scaffold43.g119.t3

AACGTTTATCCCTGCCTACAGAGATCTCAAAGTTGTTCAGATTTCATGTGGAGCTGCCCATTGCTTGGCATTAACCGCATGTGGCAGAGTATATTCATGGGGTGACAATAAAAATGGACAACTCGGACATGGAAAGACTGGCAGAAAGAAAGTTGAATTTCCTACGGAAATTGGAGCCCTTTCAAATCTCCCAGTTTACATGGTTGTTGCTGGAGGAAGTCACAGTATTGTAATGACTGTTTCAGGGACATTGTTTGTATGGGGTAAAAACAGTTTTGGCCAGCTTGGCGTAGGAGATATAGATGATCGAGATGTTCCTACTCTAGTTACTTCGTTGCGAACAAAGGGTGTAAGATATGTTGCCTGTGGAGAGGAACACACAGCAGTCCTAACAAAGTCAGGTCGAGTTTTCACGTTTGGCTATGGTGTTACTGGACAGTTAGGTCATGGTCGTCCGGAGAACGAATCTAACCCTAAGCAGATTTTAGAGCTCACTGGAGATATGGTCACACAGATCGCCTGTGGAAGGTGGCATACTCTAGCATACATCGAAAGCAGTGGCAGGCTATATTCGTTCGGAATGAACAAAGAGGGACAACTTGGCAACGGCTGCTTGGAAGCGCAAGTGACACCTACTGTTGTGGTCGGAGAATGGAAAAAATATTTACGGCAAAATACAAATAACATTTCTGATGATAAGGTGCTCCTTGCTGATCGTCAAGAAAATAATTTATTTGAAAGAACGAACAAGAGAATTGGCAATCAATTTTTTATACAAAAGATATTTTCTGGGGGAAGCCAAAATTTTGTACTTTTAGAGCAACAGAAGAGCCAGATCTATCCACTGGACATGCGAAATATTCATCTTAACGATCAAACAACAACATTCCTAACTGCTTCAAAAGTTGACAATTTAGCGAAACAATACAACGATGAGGGGAATGAGGAGTCAAGGAAACAAGCACTTGATGTTATCTCGACTGTTTTTTCGTCACCTAGTTGTCTCAATGGATCATTCCTAGATCTGGAGAAGCATGAGCAAACTGGACTACAGAATCACGGCTTGAACATGGACTGTATCGTCAAAGGAAAACATGAAGAAGCAGAAGTTCACGTCAGACTGATGCTTCTGAGATTACTGAACTACAGACCCATTCGGGAAAAGATCGATAAAAACATAAATGATTTACTGAAGAATTTACGAAAGATGCCACCAGATCTGGAATCCCTTAGAGTTTATTTACTGCTGCCAGAAATTGCATTATATGAAGAACCATTCAATCGTTATTCGTACATTGCTGAGGTCGGAGAAAAGATACTTGAATTGGATACAGATGCGCAGAGGATTTTATGTGTATGGTGGTCCAGGTTACCTGCTACTCTCTTTTCAAAAATCATAACGGCCTTCAAGAGCTGTGTTAAAGACGTGATGAAAGACTTCCAGTCAATGCAGACTGCGCATGAGAAATGGAAGAACGTGCAAATTTCGCTGTTTGTCTTGCAGATACTAAACAAGGTGAATGATGAAGCGAATTTTATAATTCCATATGAAGCATTCTACATCCCCATTATACAACAAAAAGTTGACATCTCATTGGACTACCGGATGTTACTTCATCATCCAGGACCAGATTCATTTTGTTTTTGTCGCTTCCCTTTCACACTCGATGTTCAAGCAAAATCGCAAATTATTCAAACGGATGCTGATTTAAAAATGAAGAGAGCTATTGACAAGAGCATGGCTGAGAATTTTCAAGCTCAAATGCTGAATATGTTACCACAGAACAATCCATTCCTTGTGTTTCACATCAGACGTAATTGCCTTGTTCAAGATACTTTGAGACACATCGAAAACGTTCGACATGGCATAACAACGCGCAGTGATAAAGAGGCGAGAGGAGAATTCATGAAACCCTTGAAAATCGTTTTCGAAGGTGAAGAAGGCATTGATGCTGGCGGACCGAAAAAGGAGTTTTTCTTGCTTCTAACTGAAAAGATATTTGGCAAAGAATATGGAATGTTCACTGGAAATGAAAGTTCCATGAGTGTATGGTTCAACCCCCAGTCATTTGAAGAACCTCACATGTATTACCTGATTGGTGTAATCTGTGGACTGGCTTTATATAACTCGATAATCATCGATGTACATTTTCCACCTGTGTTATACAAGAAGCTTTTAGGCCAGGAGCCGAATTTGGAAGATTTTCGTGGCTTTGATCCTGATTATGCAAGGGAGCCGAATTTGGAAGATTTTCGTGGCTTTGATCCTGATTATGCAAGAGCATTGGAATATCTTCTTAATTACGAAGAGCAGTATGAAGGTGCTATTGAAGAAATATTTGGACAGAATTTTCAGCGAATGGAAGAAAGCTATGGAGAGAAAATAATTGTGAATTTAATTGACGATGGTGCTAATACTTACGTGAAGAAAGAGAACAGGAAGCAGTACGTGAGCCTCGTCGTTGACTACATCTTAACGAAATCAATCTCAACTCAATATGAAGAATTTCGCAAAGGCTTCTTCAGTGTTTGTGACATTGATATACTGGGCATTCTACGGCCTAAAGAGCTGATGGAAATGATTTCAGGGTGTGAAGATTACGACGATTTCACGCTACTCAAAGAGGGTGCTAAATACGAAGGAGAATATCATGAAAATCATCCTGTCATTGTCAACTTTTGGAATGTATTGGAGAATTTCGATGTTGACTTGAAAAAGAAATTTTTAGAGACATCAATGGATTAGCCCTAATATAGGCTGTGAATATGT

Protein

Gene family

Family type	Membership / link
Ubiquitin family	E3\|E3 activity\|HECT · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00632 all species →	HECT	HECT-domain (ubiquitin-transferase)	Domain	Interproscan
PF00415 all species →	RCC1	Regulator of chromosome condensation (RCC1) repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000569 all species →	Domain	HECT domain	Interproscan
IPR000408 all species →	Repeat	Regulator of chromosome condensation, RCC1	Interproscan
IPR009091 all species →	Homologous_superfamily	Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein II	Interproscan
IPR044611 all species →	Family	Ubiquitin-protein ligase E3A/B/C-like	Interproscan
IPR035983 all species →	Homologous_superfamily	HECT, E3 ligase catalytic domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45700 all species →	UBIQUITIN-PROTEIN LIGASE E3C	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004842 all species →	Molecular Function	ubiquitin-protein transferase activity	Interproscan
GO:0000209 all species →	Biological Process	protein polyubiquitination	Interproscan
GO:0061630 all species →	Molecular Function	ubiquitin protein ligase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K10615	HERC4; E3 ubiquitin-protein ligase HERC4	EC:2.3.2.26	Ubiquitin system	ko04121	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.