Gene detail

Detailed information of scaffold43.g22.t4 in Aurelia aurita complex sp. Pacific

Genomic Location: scaffold43:333806...357144
NR annotation: no NCBI-NR hit recorded
Species Aurelia aurita complex sp. Pacific · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

scaffold43.g22.t4

acaatttgaggcagattgtaaaaaactggtttattttcggaatagtttggacacaggtggaaacagttttgctaagactgggtaaatcaaaggcgtctagagagacaaaggtggaaccaagatggtgggagaaatgggtgtttgatacaaacttagacttaaaatgagatgaactcatgtagatttaacaaaagtttccattgcaaatgtctgtccccaaaaccagtctttggtggacagtagatcccacttattctccagaaactgggtacattaattttttctcgtggacatacacataggaccatagatattacaagagctggacgacagtaacgaaactccctggcggagaagcactcatgccattaacagactgctttgcggatattttacttggaattggtgttggagtctcgcagctcactgaaaccataaaagctggtttgagagtcaaggacctgttctcgtactttctgtcggacagcttcagagctggttatgacagcgaggaagatcaattgttcaaagtgatgtacagacttgctagttcagaaagatatttctactaccaactttctttgattcaagagcatttgatgacacccctgctcaaaacagagagctggacgacagtaacgaaacttcctggtggagaagcactcatgccattaacagactgctttggggatattttacttggaattggtgttggagtctcgcagctcactgaaaccataaaagctggtttgagagtcaaggacctgttctcgtactttctgtcggacagcttcagagctggttatgacagatattcgaaatgttattgcgatacattggcagttggtcatcttcattcactttcaaaagctgtcagcaacataatttctaaagcaaaggatcctgtaaaagaaatcttcctaaacctagccttggaacaggcagatctggcagcacttctaagaattccactaacaagatcaagttattatgcaaaatgtgtcgagaagctttctagaatcatgaaggattcaggtgaatcaaacattgaagagattaatcaactccaagaagtcgtacaacgctggcaagactattcagatcatactgctacacgattaagagaagcagacaaaacgagggaattttgggatgaatgtcctacaaaattgattgaagccttgaaagatccttacaggcgtgtattgcgtaccagcaagaatgctcagctctcccttgcaagggcttctagactgaccagtcattcattcatgttattcaatgacgtcttcgttcattcacaatcaaacagacatttcctcgtgtttcccctggttacgatgtgggttgaaccgttattagacactgatcagcaaaagaatgctttaagagtgacatcacctgaggcctcattcgttctaatctctgaatctccttttggaagaacagaatgggtaaaagagttgaacgaagctattgcacaatgtctctcagcgacgtcattacataggatcacatcgcagtcagtaaattccatttctggaatattacgtgcagcagatgcaagggaagcatcatatacatacctcaatcacttgaggtacaaaggagcgaaatattctggcatgtggatgtctggaatgccatttggcagaggaaaaactgaatggcctgatggaatgaagtacgaaggagagttcgaaaatggaaatttccaaggttatggaataatgacctacccaactggaacacacgaggcagaacaacgctacgaaggagactgggttgaaggcaagaggcgtggatatggaaaaatgacgtatcctgatacttccgagtatgtcggtcattgggagaacgatgcgagaaatgggcatggtacattaagaacattttcacctgacggaagccttcaaactgtttacattggtggctggcacaatgatcaaaagtctggatatggagtgcaagattttgttgtcaggggtgaaaaatatattggaatgtggtcgaatgatcagaggcatggatatggcattgttgtcactgttgatggtgtctattatgaaggaagatttttgcaaaataaattggcggggaaaggaattcttctgagtgacgatgatacttgctatgaaggagaattcactgcagatatgcagcttagtggcaagggtgtgttgaccatgccgaatggtgattacatagaaggacattttcatggaaattggggtgaaggaatcaaagtaaatggaacatttaataaatttgccaatccagacccaactatgtcacctattggagaaattggatctagtcaaatgacagttaccgatttcacaataccagcaggaataaagtggaaagcactgtttgaagaattcaaagaagatgttggatgtagcaatgagacgctgtcaatcaatgcagaacaagacagtgtatggaaacacattgacaaatcgatcatcaaaaccagatcatctgatatcagaaggaggtcaacacggaagcgagatatcgataaagtacctgtgaatatttctgatagaaataaaccaaaggattgccatgatattagagaaatgcaatgtcatctggcaaagaatacaggactgaatgttaatacaggtatatatgaaaagatctgtatcctatacgaccaaagtaaagcatagcttatctagctttggccgttaaattaaaatgcaaaaaaagaaaagaaaaatatgagt

Transcript

scaffold43.g22.t4

acaatttgaggcagattgtaaaaaactggtttattttcggaatagtttggacacaggtggaaacagttttgctaagactgggtaaatcaaaggcgtctagagagacaaaggtggaaccaagatggtgggagaaatgggtgtttgatacaaacttagacttaaaatgagatgaactcatgtagatttaacaaaagtttccattgcaaatgtctgtccccaaaaccagtctttggtggacagtagatcccacttattctccagaaactgggtacattaattttttctcgtggacatacacataggaccatagatattacaAGAGCTGGACGACAGTAACGAAACTCCCTGGCGGAGAAGCACTCATGCCATTAACAGACTGCTTTGCGGATATTTTACTTGGAATTGGTGTTGGAGTCTCGCAGCTCACTGAAACCATAAAAGCTGGTTTGAGAGTCAAGGACCTGTTCTCGTACTTTCTGTCGGACAGCTTCAGAGCTGGTTATGACAGCGAGGAAGATCAATTGTTCAAAGTGATGTACAGACTTGCTAGTTCAGAAAGATATTTCTACTACCAACTTTCTTTGATTCAAGAGCATTTGATGACACCCCTGCTCAAAACAGAGAGCTGGACGACAGTAACGAAACTTCCTGGTGGAGAAGCACTCATGCCATTAACAGACTGCTTTGGGGATATTTTACTTGGAATTGGTGTTGGAGTCTCGCAGCTCACTGAAACCATAAAAGCTGGTTTGAGAGTCAAGGACCTGTTCTCGTACTTTCTGTCGGACAGCTTCAGAGCTGGTTATGACAGATATTCGAAATGTTATTGCGATACATTGGCAGTTGGTCATCTTCATTCACTTTCAAAAGCTGTCAGCAACATAATTTCTAAAGCAAAGGATCCTGTAAAAGAAATCTTCCTAAACCTAGCCTTGGAACAGGCAGATCTGGCAGCACTTCTAAGAATTCCACTAACAAGATCAAGTTATTATGCAAAATGTGTCGAGAAGCTTTCTAGAATCATGAAGGATTCAGGTGAATCAAACATTGAAGAGATTAATCAACTCCAAGAAGTCGTACAACGCTGGCAAGACTATTCAGATCATACTGCTACACGATTAAGAGAAGCAGACAAAACGAGGGAATTTTGGGATGAATGTCCTACAAAATTGATTGAAGCCTTGAAAGATCCTTACAGGCGTGTATTGCGTACCAGCAAGAATGCTCAGCTCTCCCTTGCAAGGGCTTCTAGACTGACcagtcattcattcatgttattcaatgacgtcttcgttcattcaCAATCAAACAGACATTTCCTCGTGTTTCCCCTGGTTACGATGTGGGTTGAACCGTTATTAGACACTGATCAGCAAAAGAATGCTTTAAGAGTGACATCACCTGAGGCCTCATTCGTTCTAATCTCTGAATCTCCTTTTGGAAGAACAGAATGGGTAAAAGAGTTGAACGAAGCTATTGCACAATGTCTCTCAGCGACGTCATTACATAGGATCACATCGCAGTCAGTAAATTCCATTTCTGGAATATTACGTGCAGCAGATGCAAGGGAAGCATCATATACATACCTCAATCACTTGAGGTACAAAGGAGCGAAATATTCTGGCATGTGGATGTCTGGAATGCCATTTGGCAGAGGAAAAACTGAATGGCCTGATGGAATGAAGTACGAAGGAGAGTTCGAAAATGGAAATTTCCAAGGTTATGGAATAATGACCTACCCAACTGGAACACACGAGGCAGAACAACGCTACGAAGGAGACTGGGTTGAAGGCAAGAGGCGTGGATATGGAAAAATGACGTATCCTGATACTTCCGAGTATGTCGGTCATTGGGAGAACGATGCGAGAAATGGGCATGGTACATTAAGAACATTTTCACCTGACGGAAGCCTTCAAACTGTTTACATTGGTGGCTGGCACAATGATCAAAAGTCTGGATATGGAGTGCAAGATTTTGTTGTCAGGGGTGAAAAATATATTGGAATGTGGTCGAATGATCAGAGGCATGGATATGGCATTGTTGTCACTGTTGATGGTGTCTATTATGAAGGAAGATTTTTGCAAAATAAATTGGCGGGGAAAGGAATTCTTCTGAGTGACGATGATACTTGCTATGAAGGAGAATTCACTGCAGATATGCAGCTTAGTGGCAAGGGTGTGTTGACCATGCCGAATGGTGATTACATAGAAGGACATTTTCATGGAAATTGGGGTGAAGGAATCAAAGTAAATGGAACATTTAATAAATTTGCCAATCCAGACCCAACTATGTCACCTATTGGAGAAATTGGATCTAGTCAAATGACAGTTACCGATTTCACAATACCAGCAGGAATAAAGTGGAAAGCACTGTTTGAAGAATTCAAAGAAGATGTTGGATGTAGCAATGAGACGCTGTCAATCAATGCAGAACAAGACAGTGTATGGAAACACATTGACAAATCGATCATCAAAACCAGATCATCTGATATCAGAAGGAGGTCAACACGGAAGCGAGATATCGATAAAGTACCTGTGAATATTTCTGATAGAAATAAACCAAAGGATTGCCATGATATTAGAGAAATGCAATGTCATCTGGCAAAGaatacaggactgaatgttaatacaggtatatatgaaaagatctgtatcctatacgaccaaagtaaagcatagcttatctagctttggccgttaaattaaaatgcaaaaaaagaaaagaaaaatatgagt

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02493 all species →	MORN	MORN repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003409 all species →	Repeat	MORN repeat	Interproscan
IPR011993 all species →	Homologous_superfamily	PH-like domain superfamily	Interproscan
IPR051984 all species →	Family	Alsin GEFs and Motor Neuron Regulators	Interproscan
IPR035899 all species →	Homologous_superfamily	Dbl homology (DH) domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46089 all species →	ALSIN HOMOLOG	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005085 all species →	Molecular Function	guanyl-nucleotide exchange factor activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0016197 all species →	Biological Process	endosomal transport	Interproscan
GO:0031267 all species →	Molecular Function	small GTPase binding	Interproscan
GO:0043087 all species →	Biological Process	regulation of GTPase activity	Interproscan
GO:0043231 all species →	Cellular Component	intracellular membrane-bounded organelle	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for scaffold43.g22.t4.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.