Gene detail

Detailed information of scaffold436.g18.t2 in Aurelia aurita complex sp. Pacific

Genomic Location: scaffold436:206922...221174
NR annotation: no NCBI-NR hit recorded
Species Aurelia aurita complex sp. Pacific · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

scaffold436.g18.t2

gctctgtattaaatggctgccccaagaactgtgtaagatatctccctccctatggcaaaattattttggtaaattttcgacagattcaatggaatttagaatttatgagttgtagcaggcactcaattttatgagatcctgcttttatgtatcgtcttttctttccctaggatgttgtgctgatgcgtgctcttcgtgacatgaatctgccaaaatttgtgttcgaagatgttccactgttccttggactgatagcagatttgtttcctggactcgactgtccacgcgtacgatatccaaatttcaacgatgcagtagaagattgtttgaaagacaataaatatgtcccattgccagagcaggttgacaaagtggtacaaatgtatgagacaatgctgacaaggcacacaacgatgattgttggaccaacaggcggtggaaaatctgttgtcatcaacactctgtgtcaagctcaaacaagacttggcgtacctacgaagtcgtacataatgaatgcaaaagcatgctctgtcatcgaattatatggaacacttgatccagtaacacgtgactggaccgatggtttgttgtcaaatatattcagagagatgaacaaaccaactgacaaaaacgagagaaaatatattcttttcgatggagatgtggatgctttgtgggttgaaaatatgaactctgtcatggatgataacaagcttcttacactggcaaatggagaaaggattcgactgcagaaacattgtgctttgctttttgaggttgcagacctgagatacgcctccccagctacagtttcccgttgcggaatggtatatgttgacccaaagaaccttggatatcggccattctgggaaaagtggtgcaatgcaagagtaaacacaaacgaacagaaagtattgctggatttatttgagaaatatgttcctcaatgtatcgatttggtattagatggaattgtggacggcagacaaggacaaaagctaaagacgattgttccacagacaaatctaaacatggtcacacaacttgcaatgatgctgaatgctctactaccatcacttgaaagcgcgtcatacctcgggcctgacatcacagaaggcatcttcatcacatctctcatctggtcagtaggagccggtctactcgaagacggccgggttaaattcgacggctatgttaaacgactttccgcgctttccacaaacccggctgaaggaatatcagttggtccgggcgagcttccgacctcacaaccgacactgtacgagtactattttgattccgcgcaggcaaaatggattccatgggtgaaagtcgtgccggactatgtgcatgatccggaggtaaagttcaatgagattctcgttccaacagttgacaccgtgaggagtaaatggttggttgagctgatggttggtattcataggccagttgtgctggtcggagagactggaacatcaaagacagcaacggtgcaaagttttttgagaaagctggatagtgaggtctatcttcaattgaacatcaatttctcatcccgaacaacttcaatggatgttcaaagaaatttggaagcaaatttcgagaagagaacgaaagatacatatggtccacctatgggaaagaaattgcttgtttttatggatgacatgaatatgccacaggtcgacacatatggaacacaacagccgattgcactcatgaaattgttactggagaaaggaggaatgtacgacaggggtaaagaattgtcattcaagcatttcagagatattggatttttggcagccatgggaaaggctggcggtggcagaaatgaagtcgatcctcgattcgtttcattatttagtgttttcaacatgacattcccatctcaagaatcactaaagaagatctacttgtcaatactcgacggacatttgtctcctttcaaaaaggaagttcgaggtttggcaaacacgttgacagactgcacaatggaactttactcgaagattgttcacagtttgcctcccacaccatcaaagtttcattacatcttcaacttgagagatctctccagaatatatcatggattatgcttgagcacacctgatcgattcgatgatgtctcgcagtttgttcgtgtttggagaaatgaatgctcaagggtgttttatgatcgattgattaatgataaggataaagaacttgtacagggatatttgaaggagctgatagataacaattttgcagaacatagagaagttgccttgagggatccaatcttatatggagattatcgcaattgtttggtgcctgaagaaccaagactttatgaagatgttattgactataatgcaaccaaagctattttcgaggagatcttggaggattataacgctgagaataccccaatgaacctcgttctgtttgacgacgcacttgaacatcttacacgcatacatcgtgttattcgcatggatcaagggcacgcactgctagttggtgtaggtggcagtgggaaacaaagtttaacgcggttggctgcgtttgctgcgggatgcgaggtttttgaaatcacattaagcagaggatattcagagaatgacttcagagaagatttgaaaggactttatcagaaacttggaatggaaaataagaaaatggtgtttttgtttactgatgctcatgttgcgcaagaaggtttcttggagttgattaataacatgctgacatctggaatggtccctgctttattccctgatgacgaaaaagacgctatcatatctcagatgcgtcctgaagcggagaaggtcggtcttggtcctagccgtgaaggtgtatggcaatacttcgtgagcaaatgttcaaacaatctacatatcgtattggcaatgtcacctgttggagataccttgaaaacgagatgccgaaatttccctggtttggtaaacaatacaagtattgactggtttatggagtggccgcagcaggcactctttgcagtcgcatctagattccttgaggcgcaagagaagatccccgaagaccataaagatgacgtaatagaacatgttgtcaaggtccatggctcagttggcgtatacagcaaaatgtttcttcagaagctacgacgcgtgaattacgtcactcctaagaattatttagattttatcaaaacttatgttcgtcttcttgaggaaaaagatcaatttgtactggagcagtgtcgtcgcttggatggaggcttgtcaaaactactcgctgctagtgagcaattggtagaactgaacgaaaaattggaagttcaaaaggttgcagtgacagagaaaacagaggcgtgtgaaactttgttagaagagatcacaacgaagacaaatcaagctaatgaaaagaaaagaatggctgttggaaagaaatcagaaattgctgaagagaaagtcaagattgccaaagagaaggacgttccacaagtcaatatttagaaagtgaactaacagagccgaaacggagcaaaagtagtctaagggatcgtctccaaatattcgtatcaaattcgtatagggaattcgtagcgttatacgatattgatacgatattttagaagccctatacgaatcaattcgtatacaattcgtatgtgattcgcataaattcgtatacaattcgtatatgattcgtatagaattcgtatatgaatcgtatacaattcgtatagcaaattcgtatacaattcgtatagctaattcctatacaattcgtataacaaattcgtatacaattcgtgtgaaaaattcgtatacaattcgtataacaaatccctatacaattc

Transcript

scaffold436.g18.t2

GCTCTGTATTAAATGGCTGCCCCAAGAACTGTGTAAGATATCTCCCTCCCTATGGCAAAATTATTTTGGTAAATTTTCGACAGATTCAATGGAATTTAGAATTTATGAGTTGTAGCAGGCACTCAATTTTATGAGATCCTGCTTTTATGTATCGTCTTTTCTTTCCCTAGGATGTTGTGCTGATGCGTGCTCTTCGTGACATGAATCTGCCAAAATTTGTGTTCGAAGATGTTCCACTGTTCCTTGGACTGATAGCAGATTTGTTTCCTGGACTCGACTGTCCACGCGTACGATATCCAAATTTCAACGATGCAGTAGAAGATTGTTTGAAAGACAATAAATATGTCCCATTGCCAGAGCAGGTTGACAAAGTGGTACAAATGTATGAGACAATGCTGACAAGGCACACAACGATGATTGTTGGACCAACAGGCGGTGGAAAATCTGTTGTCATCAACACTCTGTGTCAAGCTCAAACAAGACTTGGCGTACCTACGAAGTCGTACATAATGAATGCAAAAGCATGCTCTGTCATCGAATTATATGGAACACTTGATCCAGTAACACGTGACTGGACCGATGGTTTGTTGTCAAATATATTCAGAGAGATGAACAAACCAACTGACAAAAACGAGAGAAAATATATTCTTTTCGATGGAGATGTGGATGCTTTGTGGGTTGAAAATATGAACTCTGTCATGGATGATAACAAGCTTCTTACACTGGCAAATGGAGAAAGGATTCGACTGCAGAAACATTGTGCTTTGCTTTTTGAGGTTGCAGACCTGAGATACGCCTCCCCAGCTACAGTTTCCCGTTGCGGAATGGTATATGTTGACCCAAAGAACCTTGGATATCGGCCATTCTGGGAAAAGTGGTGCAATGCAAGAGTAAACACAAACGAACAGAAAGTATTGCTGGATTTATTTGAGAAATATGTTCCTCAATGTATCGATTTGGTATTAGATGGAATTGTGGACGGCAGACAAGGACAAAAGCTAAAGACGATTGTTCCACAGACAAATCTAAACATGGTCACACAACTTGCAATGATGCTGAATGCTCTACTACCATCACTTGAAAGCGCGTCATACCTCGGGCCTGACATCACAGAAGGCATCTTCATCACATCTCTCATCTGGTCAGTAGGAGCCGGTCTACTCGAAGACGGCCGGGTTAAATTCGACGGCTATGTTAAACGACTTTCCGCGCTTTCCACAAACCCGGCTGAAGGAATATCAGTTGGTCCGGGCGAGCTTCCGACCTCACAACCGACACTGTACGAGTACTATTTTGATTCCGCGCAGGCAAAATGGATTCCATGGGTGAAAGTCGTGCCGGACTATGTGCATGATCCGGAGGTAAAGTTCAATGAGATTCTCGTTCCAACAGTTGACACCGTGAGGAGTAAATGGTTGGTTGAGCTGATGGTTGGTATTCATAGGCCAGTTGTGCTGGTCGGAGAGACTGGAACATCAAAGACAGCAACGGTGCAAAGTTTTTTGAGAAAGCTGGATAGTGAGGTCTATCTTCAATTGAACATCAATTTCTCATCCCGAACAACTTCAATGGATGTTCAAAGAAATTTGGAAGCAAATTTCGAGAAGAGAACGAAAGATACATATGGTCCACCTATGGGAAAGAAATTGCTTGTTTTTATGGATGACATGAATATGCCACAGGTCGACACATATGGAACACAACAGCCGATTGCACTCATGAAATTGTTACTGGAGAAAGGAGGAATGTACGACAGGGGTAAAGAATTGTCATTCAAGCATTTCAGAGATATTGGATTTTTGGCAGCCATGGGAAAGGCTGGCGGTGGCAGAAATGAAGTCGATCCTCGATTCGTTTCATTATTTAGTGTTTTCAACATGACATTCCCATCTCAAGAATCACTAAAGAAGATCTACTTGTCAATACTCGACGGACATTTGTCTCCTTTCAAAAAGGAAGTTCGAGGTTTGGCAAACACGTTGACAGACTGCACAATGGAACTTTACTCGAAGATTGTTCACAGTTTGCCTCCCACACCATCAAAGTTTCATTACATCTTCAACTTGAGAGATCTCTCCAGAATATATCATGGATTATGCTTGAGCACACCTGATCGATTCGATGATGTCTCGCAGTTTGTTCGTGTTTGGAGAAATGAATGCTCAAGGGTGTTTTATGATCGATTGATTAATGATAAGGATAAAGAACTTGTACAGGGATATTTGAAGGAGCTGATAGATAACAATTTTGCAGAACATAGAGAAGTTGCCTTGAGGGATCCAATCTTATATGGAGATTATCGCAATTGTTTGGTGCCTGAAGAACCAAGACTTTATGAAGATGTTATTGACTATAATGCAACCAAAGCTATTTTCGAGGAGATCTTGGAGGATTATAACGCTGAGAATACCCCAATGAACCTCGTTCTGTTTGACGACGCACTTGAACATCTTACACGCATACATCGTGTTATTCGCATGGATCAAGGGCACGCACTGCTAGTTGGTGTAGGTGGCAGTGGGAAACAAAGTTTAACGCGGTTGGCTGCGTTTGCTGCGGGATGCGAGGTTTTTGAAATCACATTAAGCAGAGGATATTCAGAGAATGACTTCAGAGAAGATTTGAAAGGACTTTATCAGAAACTTGGAATGGAAAATAAGAAAATGGTGTTTTTGTTTACTGATGCTCATGTTGCGCAAGAAGGTTTCTTGGAGTTGATTAATAACATGCTGACATCTGGAATGGTCCCTGCTTTATTCCCTGATGACGAAAAAGACGCTATCATATCTCAGATGCGTCCTGAAGCGGAGAAGGTCGGTCTTGGTCCTAGCCGTGAAGGTGTATGGCAATACTTCGTGAGCAAATGTTCAAACAATCTACATATCGTATTGGCAATGTCACCTGTTGGAGATACCTTGAAAACGAGATGCCGAAATTTCCCTGGTTTGGTAAACAATACAAGTATTGACTGGTTTATGGAGTGGCCGCAGCAGGCACTCTTTGCAGTCGCATCTAGATTCCTTGAGGCGCAAGAGAAGATCCCCGAAGACCATAAAGATGACGTAATAGAACATGTTGTCAAGGTCCATGGCTCAGTTGGCGTATACAGCAAAATGTTTCTTCAGAAGCTACGACGCGTGAATTACGTCACTCCTAAGAATTATTTAGATTTTATCAAAACTTATGTTCGTCTTCTTGAGGAAAAAGATCAATTTGTACTGGAGCAGTGTCGTCGCTTGGATGGAGGCTTGTCAAAACTACTCGCTGCTAGTGAGCAATTGGTAGAACTGAACGAAAAATTGGAAGTTCAAAAGGTTGCAGTGACAGAGAAAACAGAGGCGTGTGAAACTTTGTTAGAAGAGATCACAACGAAGACAAATCAAGCTAATGAAAAGAAAAGAATGGCTGTTGGAAAGAAATCAGAAATTGCTGAAGAGAAAGTCAAGATTGCCAAAGAGAAGGACGTTCCACAAGTCAATATTTAGAAAGTGAACTAACAGAGCCGAAACGGAGCAAAAGTAGTCTAAGGGATCGTCTCCAAATATTCGTATCAAATTCGTATAGGGAATTCGTAGCGTTATACGATATTGATACGATATTTTAGAAGCCCTATACGAATCAATTCGTATACAATTCGTATGTGATTCGCATAAATTCGTATACAATTCGTATATGATTCGTATAGAATTCGTATATGAATCGTATACAATTCGTATAGCAAATTCGTATACAATTCGTATAGCTAATTCCTATACAATTCGTATAACAAATTCGTATACAATTCGTGTGAAAAATTCGTATACAATTCGTATAACAAATCCCTATACAATTC

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12774 all species →	AAA_6	Hydrolytic ATP binding site of dynein motor region	Domain	Interproscan
PF12780 all species →	AAA_8	P-loop containing dynein motor region D4	Domain	Interproscan
PF17857 all species →	AAA_lid_1	AAA+ lid domain	Domain	Interproscan
PF17852 all species →	Dynein_AAA_lid	Dynein heavy chain AAA lid domain	Domain	Interproscan
PF12775 all species →	AAA_7	P-loop containing dynein motor region	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR035699 all species →	Domain	Dynein heavy chain, hydrolytic ATP-binding dynein motor region	Interproscan
IPR003593 all species →	Domain	AAA+ ATPase domain	Interproscan
IPR024317 all species →	Domain	Dynein heavy chain, AAA module D4	Interproscan
IPR041589 all species →	Domain	Dynein heavy chain 3, AAA+ lid domain	Interproscan
IPR041466 all species →	Domain	Dynein heavy chain, AAA 5 extension domain	Interproscan
IPR043157 all species →	Homologous_superfamily	Dynein heavy chain, AAA1 domain, small subdomain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22878 all species →	UNCHARACTERIZED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0016887 all species →	Molecular Function	ATP hydrolysis activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for scaffold436.g18.t2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.