Gene detail

Detailed information of scaffold44.g42.t2 in Aurelia aurita complex sp. Pacific

Genomic Location: scaffold44:523552...562784
NR annotation: no NCBI-NR hit recorded
Species Aurelia aurita complex sp. Pacific · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

scaffold44.g42.t2

tgtgcacgggggggggggagttcttccatagtaaaggtacctggggatgtgccgcgagcaagggtatactttttcggacttctagtctagccaagggtatccttttttgcaattttggcctagcaacagtctagccaaagcgagctgtggactctaacgaagaagctagaaaacaccatcgacaccttccaacgtagacatctaagaaagattctaggaattaactggcaaagaaatattaccaacaaagagctctatgccagaacgaaatgtaaacaatggagtgaaataataagagaaaggagactaacatggctaggacatctcatgcgattgcatccagaaaaaccagcaaggaaagcccttgaagaatatctcaggaaagtgaaacagccacaaggaagaccaaagacgacctggatgcagacagtaaggcaagatttggccagcatcggaattaaactggatctttcaaaagaagcacaaacattgaatagattgtctgaactgacacaagatagaaagaactggcgtggcattgttgccactgatgttaggttatggttgagaaatgaaatggcaagtcttaaagatatgatgaagaattttattgctgtgtttgcttctcgagctgagaaagaaattgcaattcttatgcctggttatacacatatgcaacgtgctcaacccatacgttggagtcattggctaatgagtcatgcatgggcacttgtgagggattacgatcgactgcaagaagctgattcacgtgttaatgttttgccattgggaagtggtgcattggcaggcaatccatttggagtaagcagaactttacttgctaaagaactgaatttccccaaagtgacagagaacagtcttgatggaacaagtgacagagactttattgcagaattccttttttgggcatctcagaccatgcttcatttaagtaaatgggcagaagatctgatcatttacagttcgaaagagtttggattcatcgcattatcagatgcgtacagcactggaagcagcttaatgccacagaagaaaaacccagacagcttggagctcattcgaggaaaatctggacgtgtttttggaaatctatcaggttttatgatgactttgaagggtcttccaagcacttacaacaaagatttacaggaagacaaagaacagttatttgatgcagtagatacaatgaaaggtgtgctttcagttgcaaatggaacattatcaactttgcaggtcaataaagacgcgtgcttagcagcattgagtccagacatgctggccactgatattgcatactaccttgtcaggaaaggggtaccctttagagatgctcattcgctctccggatctgttgttcgtttagcagaagagaaacatgtctctatcactgaactgaagacagatgatcttaaagcaatacatgagctctttgaagaggatattatgaaaatttgggattacgagcacagcgtagagcaatacaattcaagtggaggtacaagtaaggaaactgttttagaacaaattcaaatgttgaagaaatgggtgagtgaacattaaacagaatcgacctcatgtatgtagcaaattgtaatttagttttgattagaaatattgtttagatgggttgaaatggattagtgacagcaaaagtgacagcatttcggaccattgatattgcgaatcagaaaccctgagctgacagcatatgtgcaatgtgttgggcgttggggactctggagggggatcagtagctgtagcaactgctgtcgtcgttgttctctcgtctggggttcctattgctcagcatcatactactatgctggcctgacatccaatgtgaaacggattctagtatttatcagtaatttatcgtatttgtagctttttgtagtttgattttttgggattttttcttgtgatttttctatgattttgtgatttttgtatggtgattttgtgatttttgtatgtgatttttgtatgtgatttttttgtgattttaaggaaggtgtacgaaaaaaaaatcagtgatttgcccctcgactaaatcctctgaacttgtttctcttttcctattcaatcatttatttgcagcttttgtaatggtttattagtttttatttagttgtattttgttttgttcctttttattttttgtaatagttatgtctagtttataccgggtgcgccaaaataaactatgcacgtttggcaggccacactaaatcgtacactggaccaattttgaatatttgtgacttaatctttagcagaaagcctgaattagatactgggatttttgcacattttttcgttttcagttttttagactagaagcgaatttcttaacttttagttttcggaaggaaatccttgatatatttttactttactttcacttgcttcttgtctcatattactcgtaaggtacttgagcagtgtataaacattggaaaggcttaaaaaacattgttttgaaatgctcacgagggcacaggtagtgagcatgaagatggaacctctaagaaactctgagtattcaaatctgataattttaagaaactttcagtactgactcaaatccttagtttcttacaaaacaaatacgtgtaggtgggtgagcattaaaaactcgttctgcttcatagaagcaaagtgtaatatgatgaaaatagttaatattgggtagtagtcaatcatttttgtttaagggagttgcgattatgtatagagtgggagaaatgcagtgataatatttatcttttgcattcgttaaaatactttgtttcaggaaatgattgaatgcagtttgttctgtaaatttactccggctgacagttcctttgatgagtagcccccaagcaagctggaaagcatttcagtttagtcccaccccagatggcgcaacattgtgttcaaaaaatagacgtttgcctgaatc

Transcript

scaffold44.g42.t2

TGTGCACGGGGgggggggagttcttccatagtaaaggtacctggggatgtgccgcgagcaagggtatactttttcggacttctagtctagccaagggtatccttttttgcaattttggcctagcaacagtctagccaaagCGAGCTGTGGACTCTAACGAAGAAGCtagaaaacaccatcgacaccttccaacgtagacatctaagaaagattctaggaattaactggcaaagaaatattaccaacaaagagctctatgccagaacgaaatgtaaacaatggagtgaaataataagagaaaggagactaacatggctaggacatctcatgcgattgcatccagaaaaaccagcaaggaaagcccttgaagaatatctcaggaaagtgaaacagccacaaggaagaccaaagacgacctggatgcagacagtaaggcaagatttggccagcatcggaattaaactggatctttcaaaagaagcacaaacattgaatagattgtctgaactgacacaagatagaaagaactggcgtggcattGTTGCCACTGATGTTAGGTTATGGTTGAGAAATGAAATGGCAAGTCTTAAAGATATGATGAAGAATTTTATTGCTGTGTTTGCTTCTCGAGCTGAGAAAGAAATTGCAATTCTTATGCCTGGTTATACACATATGCAACGTGCTCAACCCATACGTTGGAGTCATTGGCTAATGAGTCATGCATGGGCACTTGTGAGGGATTACGATCGACTGCAAGAAGCTGATTCACGTGTTAATGTTTTGCCATTGGGAAGTGGTGCATTGGCAGGCAATCCATTTGGAGTAAGCAGAACTTTACTTGCTAAAGAACTGAATTTCCCCAAAGTGACAGAGAACAGTCTTGATGGAACAAGTGACAGAGACTTTATTGCAGAATTCCTTTTTTGGGCATCTCAGACCATGCTTCATTTAAGTAAATGGGCAGAAGATCTGATCATTTACAGTTCGAAAGAGTTTGGATTCATCGCATTATCAGATGCGTACAGCACTGGAAGCAGCTTAATGCCACAGAAGAAAAACCCAGACAGCTTGGAGCTCATTCGAGGAAAATCTGGACGTGTTTTTGGAAATCTATCAGGTTTTATGATGACTTTGAAGGGTCTTCCAAGCACTTACAACAAAGATTTACAGGAAGACAAAGAACAGTTATTTGATGCAGTAGATACAATGAAAGGTGTGCTTTCAGTTGCAAATGGAACATTATCAACTTTGCAGGTCAATAAAGACGCGTGCTTAGCAGCATTGAGTCCAGACATGCTGGCCACTGATATTGCATACTACCTTGTCAGGAAAGGGGTACCCTTTAGAGATGCTCATTCGCTCTCCGGATCTGTTGTTCGTTTAGCAGAAGAGAAACATGTCTCTATCACTGAACTGAAGACAGATGATCTTAAAGCAATACATGAGCTCTTTGAAGAGGATATTATGAAAATTTGGGATTACGAGCACAGCGTAGAGCAATACAATTCAAGTGGAGGTACAAGTAAGGAAACTGTTTTAGAACAAATTCAAATGTTGAAGAAATGGGTGAGTGAACATTAAACAGAATCGACCTCATGTATGTAGCAAATTGTAATTTAGTTTTGATTAGAAATATTGTTTAGATGGGTTGAAATGGATTAGTGACAGCAAAAGTGACAGCATTTcggaccattgatattgcgaatcagaaaccctgagctgacagcatatgtgcaatgtgttgggcgttggggactctggagggggatcagtagctgtagcaactgctgtcgtcgttgttctctcgtctggggttcctattgctcagcatcatactactatgctggcctgacatccaatgtgaaacggattctagtatttatcagtaatttatcgtatttgtagctttttgtagttTGATTTTTTGGGATTTTTTCTTGTGATTTTTCTATGATTTTGTGATTTTTGTATGGTGATTTTGTGATTTTTGTATGTGATTTTTGTATGTGATTTTTTTGTGATTTTAAGGAAGGTGTACGAAAAAAAAATCAGTGATTTGCCCCTCGACTAAATCCTCTGAACTTGTTTCTCTTTTCCTATTCAATCATTTATTTGCAGCTTTTGTAATGGTTTATTAGTTTTTATTTAGTTGTATTTTGTTTTGTTCCTTTTTATTTTTTGTAATAGTTATGTCTAGTTTAtaccgggtgcgccaaaataaactatgcacgtttggcaggccacactaaatcgtacactggaccaattttgaatatttgtgacttaatctttagcagaaagcctgaattagatactgggatttttgcacattttttcgttttcagttttttagactagaagcgaatttcttaacttttagttttcggaaggaaatccttgatatatttttactttactttcacttgcttcttgtctcatattactcgtaaggtacttgagcagtgtataaacattggaaaggcttaaaaaacattgttttgaaatgctcacgagggcacaggtagtgagcatgaagatggaacctctaagaaactctgagtattcaaatctgataattttaagaaactttcagtactgactcaaatccttagtttcttacaaaacaaaTACGTGTAGGTGGGTGAGCATTAAAAACTCGTTCTGCTTCATAGAAGCAAAGTGTAATATGATGAAAATAGTTAATATTGGGTAGTAGTCAATCATTTTTGTTTAAGGGAGTTGCGATTATGTATAGAGTGGGAGAAATGCAGTGATAATATTTATCTTTTGCATTCGTTAAAATACTTTGTTTCAGGAAATGATTGAATGCAGTTTGTTCTGTAAATTTACTCCGGCTGACAGTTCCTTTGATGAGTAGCCCCCAAGCAAGCTGGAAAGCATTTCAGTTTAGTCCCACCCCAGATGGCGCAACATTGTGTTCAAAAAATAGACGTTTGCCTGAATC

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00206 all species →	Lyase_1	Lyase	Domain	Interproscan
PF14698 all species →	ASL_C2	Argininosuccinate lyase C-terminal	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR009049 all species →	Family	Argininosuccinate lyase	Interproscan
IPR022761 all species →	Domain	Fumarate lyase, N-terminal	Interproscan
IPR024083 all species →	Homologous_superfamily	Fumarase/histidase, N-terminal	Interproscan
IPR008948 all species →	Homologous_superfamily	L-Aspartase-like	Interproscan
IPR020557 all species →	Conserved_site	Fumarate lyase, conserved site	Interproscan
IPR029419 all species →	Domain	Argininosuccinate lyase, C-terminal	Interproscan
IPR000362 all species →	Family	Fumarate lyase family	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43814 all species →	ARGININOSUCCINATE LYASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004056 all species →	Molecular Function	argininosuccinate lyase activity	Interproscan
GO:0042450 all species →	Biological Process	arginine biosynthetic process via ornithine	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0003824 all species →	Molecular Function	catalytic activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01755	argH, ASL; argininosuccinate lyase	EC:4.3.2.1	Exosome	ko04147	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.