Gene detail

Detailed information of scaffold445.g7.t1 in Aurelia aurita complex sp. Pacific

Genomic Location: scaffold445:157248...184234
NR annotation: no NCBI-NR hit recorded
Species Aurelia aurita complex sp. Pacific · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

scaffold445.g7.t1

attatggcctctatttggcaaaacgctaacctcgttctgggataaataatgcagtaaactttttctagcgtcaatttgagttgctgtggtgcaaagagttatcgttataaaatagggaaaaacactttattagaaggttattcagctaatgaagcagctttaatcaaaagaagaaaacccataatacaaggagacatactgcacagtgctttgaaatctcagcagtaaagtatattggattgaagaagaaagaaagaaatttgggcctaaatttttggttgaatataacagtcaagtcacaatgaccagccacataacacctgggcagcaagtgattacactttgggcatcggcaaatccaccaacaaatatcgaggccatagttggtgcgctgagaaatcaaactggaagtgaaggaagagtgcaagttgagcatgtggatatcctaccgtcatgtgaccacataacacctgggcagcaagtgattacactttgggcatcggcaaatccaccaacaaatatcgaggccatagttggtgcgctgagaaatcaaactggaagtgaaggaagagtgcaagttgagcatgtggatatcctaccgtcatctgctcatccaagctcatcatttgatgtggcaatatcaggacttctctcaccatcaacatacatccacaatacagatatcttagcagaaattgcaaggattttgaaaccaagtggaaaattcctggttagagagcctgcaggaggaagatctgctgaaaagctcatatcaactttgaaactttctggttttgtcaaaccatcagagccaaaaatatcacagatggacagtgacgcaatacaaatggtagaagttgtttgtcacaagccagattttgaagttggagcaggctcccgaatttccattaaaacaagtataaagaaaccagtagatcaggacgttgctaaagtgtggacgttatctgcaatggaaactaatgacgaggatttggacatcatagactcggatgctttactcgaagaagaagacttgatccgtccaaccactggtaacctcaaaagtgactgcggtacatcaaaagctggcaagaagagagcatgcaaaaattgctcttgtggcctcgcagaggaactagatggaaagaaaccagtgaatccaaagccatacaaatcagcatgcggaaattgcagtcttggagatgcattcaggtgtggtggatgcccttatatcgggatgcccccttttaaaccaggtgaacaagttctgttacccaacaatatgctgaaagcagacgtttgatcgacacttcaggtattactgatatttcaatcataacacagacatttcgtaagtaacacacactggattcttctaactctgaaaatgtatctgaatcacattaaatgatacgctcaacctctttccagagcaggagcgtcaactctttaaaatggcgatttgaaaggtcctctgctctttctgctctttcggtttcgggtgaatggtagaccctatcttttatgtttttgatcggaaccttttcgtccaattcaattcaatagataatttggtaaagcaattcagttcaatagataagtaggtaaaagatttttcgtaattgcgagcgaaaactgtggcgaattgtaataagtctaggtgaatggcttgaaaggaacattggtactttaccattatttacctttggcatttttgttatctttatttcaaaattacaatgctttttatgttgacatcatcaataaataaatcataaaccgggagagcgacagacttaccacgttatagtacagattgataaattaatcttttcttgaacattctaaattattttcctctattgatttagaacttgcaacagttttaaacttggctgaaatttcagaacaattcttttctttaaaacaaaacatgctgtgattttgaaaatgtcacgttagtctatggatacagtatcttcaagcatattgtcgcatttatttctcacgcacaaggaatatctaataccaatgcaaaataggtgtatacatgcgatgattcaagagccaattcacctgagcatataaaagtttaaggttattcagaaatatactacagctttgctaatgtttcgatattcatctttttcggtaactcaaagttactgaagaaggtgtatatatgcgaatgtacacttacactgtctacattctaattaagtattctttgaaatgctggtatatctgtatattgaaagaagtttgtctatttgacatgttaaaaactaaaagtctgtgttgcgaactgcatatgagaggctttgtaagaagtgatgctgcctgtttcattgggactttatctcttccaagttataacgggtgacccaaagaaactccacgagctagatcgcacatagtttccttaaagcaaatgtcatgaacacaaacaaggtgtcagcatgtagctgaaaagctcagctatcttttgagatgttgcttggtaagtttaagttgtgccttctgtccgaaaaacagtttcaaacatagggcaattcgttcatttctcggacagttccctccttttccagtccatgtattagaagatgtgaaaattaagccaagttctaaatttgcttaggagcattaaatttgaatgaggaacacagctcagtcattttgcgtcattttgcaaacaaaaaatctccccgacttcaaatccgtcgctacgttgagttttcacaaaatgttgactggaaaatgatggcgattatttcactcaaaatggggaatctgggattcgaaattttctttgaatctgttttttcggatggttatcattgcttaagatgaccatgcagcagctcaaaagatagctaagcctttcaagtaaactgtgatacaaagcaattgacaataggttttgattccagagagcttgttatgagctagctgatgaagtttttctttggtcaccgggtaagtaatgtccgcaaaaagtaacaataagccatagtaatgcaatgcttgaaattgtaagctgaaatgtaagtaaactatcgaattttgg

Transcript

scaffold445.g7.t1

ATTATGGCCTCTATTTGGCAAAACGCTAACCTCGTTCTGGGATAAATAATGCAGTAAACTTTTTCTAGCGTCAATTTGAGTTGCTGTGGTGCAAAGAGTTATCGTTATAAAATAGGGAAAAACACTTTATTAGAAGGTTATTCAGCTAATGAAGCAGCTTTAATCAAAAGAAGAAAACCCATAATACAAGGAGACATACTGCACAGTGCTTTGAAATCTCAGCAGTAAAGTATATTGGATTGAAGAAGAAAGAAAGAAATTTGGGCCTAAATTTTTGGTTGAATATAACAGTCAAGTCACAATGACCAGCCACATAACACCTGGGCAGCAAGTGATTACACTTTGGGCATCGGCAAATCCACCAACAAATATCGAGGCCATAGTTGGTGCGCTGAGAAATCAAACTGGAAGTGAAGGAAGAGTGCAAGTTGAGCATGTGGATATCCTACCGTCATGTGACCACATAACACCTGGGCAGCAAGTGATTACACTTTGGGCATCGGCAAATCCACCAACAAATATCGAGGCCATAGTTGGTGCGCTGAGAAATCAAACTGGAAGTGAAGGAAGAGTGCAAGTTGAGCATGTGGATATCCTACCGTCATCTGCTCATCCAAGCTCATCATTTGATGTGGCAATATCAGGACTTCTCTCACCATCAACATACATCCACAATACAGATATCTTAGCAGAAATTGCAAGGATTTTGAAACCAAGTGGAAAATTCCTGGTTAGAGAGCCTGCAGGAGGAAGATCTGCTGAAAAGCTCATATCAACTTTGAAACTTTCTGGTTTTGTCAAACCATCAGAGCCAAAAATATCACAGATGGACAGTGACGCAATACAAATGGTAGAAGTTGTTTGTCACAAGCCAGATTTTGAAGTTGGAGCAGGCTCCCGAATTTCCATTAAAACAAGTATAAAGAAACCAGTAGATCAGGACGTTGCTAAAGTGTGGACGTTATCTGCAATGGAAACTAATGACGAGGATTTGGACATCATAGACTCGGATGCTTTACTCGAAGAAGAAGACTTGATCCGTCCAACCACTGGTAACCTCAAAAGTGACTGCGGTACATCAAAAGCTGGCAAGAAGAGAGCATGCAAAAATTGCTCTTGTGGCCTCGCAGAGGAACTAGATGGAAAGAAACCAGTGAATCCAAAGCCATACAAATCAGCATGCGGAAATTGCAGTCTTGGAGATGCATTCAGGTGTGGTGGATGCCCTTATATCGGGATGCCCCCTTTTAAACCAGGTGAACAAGTTCTGTTACCCAACAATATGCTGAAAGCAGACGTTTGATCGACACTTCAGGTATTACTGATATTTCAATCATAACACAGACATTTCGTAAGTAACACACACTGGATTCTTCTAACTCTGAAAATGTATCTGAATCACATTAAATGATACGCTCAACCTCTTTCCAGAGCAGGAGCGTCAACTCTTTAAAATGGCGATTTGAAAGGTCCTCTGCTCTTTCTGCTCTTTCGGTTTCGGGTGAATGGTAGACCCTATCTTTTATGTTTTTGATCGGAACCTTTTCGTCCAATTCAATTCAATAGATAATTTGGTAAAGCAATTCAGTTCAATAGATAAGTAGGTAAAAGATTTTTCGTAATTGCGAGCGAAAACTGTGGCGAATTGTAATAAGTCTAGGtgaatggcttgaaaggaacattggtactttaccattatttacctttggcatttttgttatctttatttcaaaattacaatgctttttatgttgacatcatcaataaataaatcataaaccgggagagcgacagacttaccacgttatagtacagattgataaattaatcttttcttgaacattctaaattattttcctctattgatttagaacttgcaacagttttaaacttggctgaaatttcagaacaattcttttctttaaaacaaaacatgctgtgattttgaaaaTGTCACGTTAGTCTATGGATACAGTATCTTCAAGCATATTGTCGCATTTATTTCTCACGCACAAGGAATATCTAATACCAATGCAAAATAGGTGTATACATGCGATGATTCAAGAGCCAATTCACCTGAGCATATAAAAGTTTAAGGTTATTCAGAAATATACTACAGCTTTGCTAATGTTTCGATATTCATCTTTTTCGGTAACTCAAAGTTACTGAAGAAGGTGTATATATGCGAATGTACACTTACACTGTCTACATTCTAATTAAGTATTCTTTGAAATGCTGGTATATCTGTATATTGAAAGAAGTTTGTCTATTTGACATGTTAAAAACTAAAAGTCTGTGTTGCGAACTGCATATGAGAGGCTTTGTAAGAAGTGATGCTGCCTGTTTCATTGGGACTTTATCTCTTCCAAGTTATAACGGGTGACCCAaagaaactccacgagctagatcgcacatagtttccttaaagcaaatgtcatgaacacaaacaaggtgtcagcatgtagctgaaaagctcagctatcttttgagatgttgcttggtaagtttaagttgtgccttctgtccgaaaaacagtttcaaacatagggcaattcgttcatttctcggacagttccctccttttccagtccatgtattagaagatgtgaaaattaagccaagttctaaatttgcttaggagcattaaatttgaatgaggaacacagctcagtcattttgcgtcattttgcaaacaaaaaatctccccgacttcaaatccgtcgctacgttgagttttcacaaaatgttgactggaaaatgatggcgattatttcactcaaaatggggaatctgggattcgaaattttctttgaatctgttttttcggatggttatcattgcttaagatgaccatgcagcagctcaaaagatagctaagcctttcaagtaaactgtgatacaaagcaattgacaataggttttgattccagagagcttgttatgagctagctgatgaagtttttcttTGGTCACCGGGTAAGTAATGTCCGCAAAAAGTAACAATAAGCCATAGTAATGCAATGCTTGAAATTGTAAGCTGAAATGTAAGTAAACTATCGAATTTTGG

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF20922 all species →	Anamorsin_N	Anamorsin, N-terminal	Domain	Interproscan
PF05093 all species →	CIAPIN1	Cytokine-induced anti-apoptosis inhibitor 1, Fe-S biogenesis	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR029063 all species →	Homologous_superfamily	S-adenosyl-L-methionine-dependent methyltransferase superfamily	Interproscan
IPR049011 all species →	Domain	Anamorsin, N-terminal domain, metazoan-type	Interproscan
IPR046408 all species →	Domain	Anamorsin, C-terminal	Interproscan
IPR007785 all species →	Family	Anamorsin	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13273 all species →	ANAMORSIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0016226 all species →	Biological Process	iron-sulfur cluster assembly	Interproscan
GO:0051536 all species →	Molecular Function	iron-sulfur cluster binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K22746	CIAPIN1, DRE2; anamorsin	-	Signaling proteins	-	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.