Gene detail

Detailed information of scaffold446.g10.t2 in Aurelia aurita complex sp. Pacific

Genomic Location: scaffold446:118147...131544
NR annotation: no NCBI-NR hit recorded
Species Aurelia aurita complex sp. Pacific · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

scaffold446.g10.t2

aaagctaaattcacagcgctagagtcaaccaaatccgtatttttattttttttgggacacccggtagtttacaatgctaaatgttgatacaaagaatgatgtgtccctgacctacaaattacaaaatgtgtgcctttcaagcaataatcttcctctgtagaaacataatatatccatcgtagcaacgagaactcttggtattatcaacaacaaacgtactcgagaacggactgcctaaatagctcctttgtgagagctcacagtgacctcttatttcagagttatgttatgagtccctactgaccgaattgacatcaacaaatcagggagacaagagactcaaggtcataagtctaccgcgtgttcagagcgattactgattgtagatgatgcgattttacggcctgcagattgtagttgccaataaatgaaattcgactggatgctttggctggctaacgttgccttcaacctctaaataaatgaagacaaaagaatcattttcacagaaattcatgcaaatggcagaaaatgtcccttcaaacttattcaaccatgctgcctttcaggaactacagtatagtctgtctttaattagatgtcgtgtgcaaatacacgcgaataacaataatcaaaagggatttgcatgagtattttacgctgtcgcaaacgtcacttgacatctaatctgagatggactttaaactcactgtattgtaataattcttttcagtcagcaactagagattcactcattataattgatgaacttggtcgcggaacatcaacctatgatggttttggactggcatgggctatctccgagtaagtactttgtgtctgtccaaaatgataaatcagcgtttgctataatgaaccaggttccccaaggaatttcacgagccagattaaaaatagccatctgaaatagaattttatctaaagctcctttgtggcaacgattagttggaaggcttggcggtctcttgaaatagtgcgtagtcattcagagctattgttacagttcgaaaagctagatttaaagaaaatttcgaatcctacgtttcttattcaacgtgaataatcgctacccttttccagttaacattttatgaaaacttaatgttaaaggtggattgttagccaaatgattgacccctgttccttcttaaaatgttgtgcttgcatgccaatttggatctcagcttttatcaaatcttcctacacatggaccgtaaaaggacgggaaagtctaaggaatgaatggactagcaggtttttgaaattggcgtttcggaggataatcatgacttgaaatgactgagcaacatctcaagggataggatacctaaatcctttcagttacatgctgatacgttgtttgtgttcataacaattgctttcaggcagctattcgccagtcgtgaattcgtgaattcttaaggacattcgttaaaaacatggattctgctacaatttcactgtgttaccaatcattattacctgataaaaggtctcggctcgctatctgttagagagctgatcaggtttgaaacagcagctactgttttcaaataactttgcccagatcatttggcccaaatgtttcaaagacagcgagaacaggcagtaaggacgctaagaatcacccaaacggatttgaaactgcctttgtttcgaacaacaaatggacaggaatcatttgcgtatcgaggggcgagtgtttggaatggtctaaatcatcaaatcaaactgtctccctcattatcaaattcaaattaaaactaaaggaaggttttcttttgttgcttattaacagtgtattaagtagacttatgacgatgagtttcttgtttccctgtgctctttgacttcttgatggcgcttcagtcaacagagactcataatattactctgaaaaagttgaccctattaggcctaatatgctgggattcctagcataccaatcagattgcgagatttggcgaagaacaatcagtttcgaaccttcaattcgattgacgcagcttactaaatttgaaggaagttgctgcagcagtcccggtattagcagcaactgggttggttgtcgttgtgaagcttgacgaaattgctgcagcagctatcgaaagttcagcttcagacactgagagatctggagtagtaggagacgatattatttgatctcctggcgaagacataatgattatgcaggcatccagacgttgagagaagcatgaaaagcacaagattagcagtggcaatcgcacattgactcaggaacaagtgaatgaagagatagaacacactccctaaaaccacatggaggactacccaaataaggacagccaattaggaacataaaccttgattgggcaatacctgatggtatgatatgataccatgagaaacctacgtggcatcaactgatcctattcacgtgactagaaatacctgaaaaaccaccccactgcaagcactgtgctcctccccagtagaccaaaggtatgagtgccaacccaagccaagcacgaatccctgaccccatatttagactcacattgaagctatgccacaatgtccacatcgaatgcagaagatagggtcagacatattgcaacagaactgaagagtttttgtttatttgcgacacactttcacgagctgaccggtttagctgactgtgttaccagcgtatcaaaccagcacgtaaccgcaatgacggttgatggaagtctgacgttgctgtataaagtcaaaccaggcgtatgtgatcagagctttggaattcatgttgccgagcttgcgcattttccctcgcacgtgattgaggaaggaaccgaactgatcgatgactttctacgaaaggttgcagagattccggttgacaaactttctgatgaagacattcaagccaaaatgaaagacatcaaaagtgagatggcagccaatgacaatttgtatatcaaggaattattagttaaataaagaataaaagcatttttacaccaactgtacaattaaatgaaaatctattgttgtcatatgatcgattagtttgtttgcagcaaatattttctctgctgtgataaaactattgcatgtga

Transcript

scaffold446.g10.t2

aaagctaaattcacagcgctagagtcaaccaaatccgtatttttattttttttgggacacccggtAGTTTACAATGCTAAATGttgatacaaagaatgatgtgtccctgacctacaaattacaaaatgtgtgcctttcaagcaataatcttcctctgtagaaacataatatatccatcgtagcaacgagaactcttggtattatcaacaacaaacgtactcgagaacggactgcctaaatagctcctttgtgagagctcacagtgacctcttatttcagagttatgttatgagtccctactgaccgaattgacatcaacaaatcagggagacaagagactcaaggtcataagtctaCCGCGTGTTCAGAGCGATTACTGATTGTAGATGATGCGATTTTACGGCCTGCAGATTGTAGTTGCCAATAAATGAAATTCGACTGGATGCTTTGGCTGGCTAACGTTGCCTTCAACCTCTAAATAAATGAAGACAAAAGAATCATTTTCACAGAAATTCATGCAAATGGCAGAAAATGTCCCTTCAAACTTATTCAACCATGCTGCCTTTCAGGAACTACAGTATAGTCTGTCTTTAATTAGATGTCGTGTGCAAATACACGCGAATAACAATAATCAAAAGGGATTTGCATGAGTATTTTACGCTGTCGCAAACGTCACTTGACATCTAATCTGAGATGGACTTTAAACTCACTGTATTGTAATAATTCTTTTCAGTCAGCAACTAGAGATTCACTCATTATAATTGATGAACTTGGTCGCGGAACATCAACCTATGATGGTTTTGGACTGGCATGGGCTATCTCCGAGTAAGTACTTTGTGTCTGTCCAAAATGATAAATCAGCGTTTGCTATAATGAACCAGGTTCCCCaaggaatttcacgagccagattaaaaatagccatctgaaatagaattttatctaaagctcctttgtggcaacgattagttggaaggcttggcggtctcttgaaatagtgcgtagtcattcagagctattgttacagttcgaaaagctagatttaaagaaaatttcgaatcctacgtttcttattcaacgtgaataatcgctacccttttccagttaacattttatgaaaacttaatgttaaaggtggattgttagccaaatgattgacccctgttccttcttaaaatgttgtgcttgcatgccaatttggatctcagcttttatcaaatcttcctacacatggaccgtaaaaggacgggaaagtctaaggaatgaatggactagcaggtttttgaaattggcgtttcggaggataatcatgacttgaaatgactgagcaacatctcaagggataggatacctaaatcctttcagttacatgctgatacgttgtttgtgttcataacaattgctttcaggcagctattcgccagtcgtgaattcgtgaattcttaaggacattcgttaAAAACATGGATTCTGCTACAATTTCACTGTGTTACCAATCATTATTACctgataaaaggtctcggctcgctatctgttagagagctgatcaggtttgaaacagcagctactgttttcaaataactttgcccagatcatttggcccaaatgtttcaaagacagcgagaacaggcagtaaggacgctaagaatcacccaaacggatttgaaactgcctttgtttcgaacaacaaatggacaggaatcatttgcgtatcgaggggcgagtgtttggaatggtctaaatcatcaaatcaaactgtctccctcattatcaaattcaaattaaaactaaaggaaggttttcttttgttgctTATTAACAGTGTATTAAGtagacttatgacgatgagtttcttgtttccctgtgctctttgacttcttgatggcgcttcagtcaacagagactcataatattactctgaaaaagttgaccctattaggcctaatatgctgggattcctagcataccaatcagattgcgagatttggcgaagaacaatcagtttcgaaccttcaattcgattgacgcagcttactaaatttgaaggaagttgctgcagcagTCCCGGTATTAGCAGCAACTGGGTTGGTTGTCGTTGTGAAGCTTGACGAAATTGCTGCAGCAGCTATCGAAAGTTCAGCTTCAGACACTGAGAGATCTGGAGTAGTAGGAGACGATATTATTTGATCTCCTGGCGAAGACATAATGATTATGCAGGCATCCAGACGTTGAGAGAAGCATGAAAAGCACAAGATTAGCAGTGGCAATCGCACATTGACTCAGGAACAAGTGAATGAAGAGATAGAACACACTCCCTAAAaccacatggaggactacccaaataaggacagccaattaggaacataaaccttgattgggcaatacctgatggtatgatatgataccatgagaaacctacgtggcatcaactgatcctattcacgtgactagaaatacctgaaaaaccaccccactgcaagcactgtgctcctccccagtagaccaaaggtatgagtgccaacccaagccaagcacgaatccctgaccccatatttagactcacattgaagctatgccacaatgtcCACatcgaatgcagaagatagggtcagACATATTGCAACAGAACTGAAGAGTTTTTGTTTATTTGCGACACACTTTCACGAGCTGACCGGTTTAGCTGACTGTGTTACCAGCGTATCAAACCAGCACGTAACCGCAATGACGGTTGATGGAAGTCTGACGTTGCTGTATAAAGTCAAACCAGGCGTATGTGATCAGAGCTTTGGAATTCATGTTGCCGAGCTTGCGCATTTTCCCTCGCACGTGATTGAGGAAGGAACCGAACTGATCGATGACTTTCTACGAAAGGTTGCAGAGATTCCGGTTGACAAACTTTCTGATGAAGACATTCAAGCCAAAATGAAAGACATCAAAAGTGAGATGGCAGCCAATGACAATTTGTATATCAAGGAATTATTAGTTAAATAAAGAATAAAAGCATTTTTACACCAACTGTACAATTAAATGAAAATCTATTGTTGTCATATGATCGATTAGTTTGTTTGCAGCAAATATTTTCTCTGCTGTGATAAAACTATTGCATGTGA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00488 all species →	MutS_V	MutS domain V	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR045076 all species →	Family	DNA mismatch repair MutS family	Interproscan
IPR000432 all species →	Domain	DNA mismatch repair protein MutS, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11361 all species →	DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003690 all species →	Molecular Function	double-stranded DNA binding	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006298 all species →	Biological Process	mismatch repair	Interproscan
GO:0006312 all species →	Biological Process	mitotic recombination	Interproscan
GO:0030983 all species →	Molecular Function	mismatched DNA binding	Interproscan
GO:0032301 all species →	Cellular Component	MutSalpha complex	Interproscan
GO:0140664 all species →	Molecular Function	ATP-dependent DNA damage sensor activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for scaffold446.g10.t2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.