Gene detail

Detailed information of scaffold446.g2.t1 in Aurelia aurita complex sp. Pacific

Genomic Location: scaffold446:28485...37354
NR annotation: no NCBI-NR hit recorded
Species Aurelia aurita complex sp. Pacific · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

scaffold446.g2.t1

nnnnaatgtaaaaaaggcaaacgaagtcaaactggtgcctgagtcatgggtaagtgcattattcagctctagaattttaccattactttttaagtgcaatggaatgagttttaagcgaggacaagcttaggcccaaatgatatctctaccagaaatcattagaaattgcctccaattttgagatatgatagcagtaaaggagtttgggttattgctgagatttagcttatgagaagtaccatactagagggcaataatcaaaattttaatatacaaagctctggacaagaatcttcttttcattaaagccaatatattgtttcagtctttttaaaacattgagttgtgatgcggcttttctgcaaatttcagagatatgctgttcaaagttcagtttatgatctagttgaatacctagcaatttaaccgtttcttccgatttgattatttttccttggatgttgaaattttctccacttgtattcgttcgatcctgcatccaagtactgcatccaagtggtgttcttactgcatatgtttcatcatgttccccttattctacttcaagctggcgcaacagacttggggaatcttggccaatcaatagcaaaaattctgatgagaattatgtctatggaattcatcgtgagcgtacaaaaagcccacaagtaaatgtcatggtatgtggacattctttcgaaatggttgtggatacaggtgcgacaataactgtcattgatcaagaaaccttttccaaaatgagaaatgtgaagctacagagtacacagacaaaagcctttgcatacgactgtaaaaaaccagtaaaattcacaggaaaattcgaggcaaccgtcgaaacaaagaaacgtatcaacgtagcaacattgtatgttgtgaaaggttcaaacaatagcggcaatttgatgtctctttcaacagccaaagggttgggattgattagtttgcatatcaatcaggtgacaacaaaatattgcagcatagagaatatcttgcagaaacacagcaaaatattttattgccttggaaaattgaaacacacaaaagtcccgttaagcattgacgtcaataaagcaccgaaagtacaaccccagaggacaataccgtatcatgtacgtcagaaagtcaaaactgcattgaaagagctagaagaacaggacattattgagaaagtaccgggcaatgaaggaactccatgggtatcacccatagtagtagtaccgaagaaagatggtggagtaagaaatagtgttgacatgcgacttgcaaatgaggctatccaaagaataaccctgccgattatttatccagacatcctacgtcagtttgcagaaacaagagaaaatgacagcagagtaaatacattttttgttcgtaattgcattcctaaagccatgacacttgaagaaatctcagaagctactgatcaagatcgagttcttaaaggacttcgagcagctatacgtttgaatcaatgggattacgacctcgtgaagccatatcacctattcaaagatgaacttacgattgggaagcagaacgtagttcttagaggatccaaaattgtcatttcacagtcgttacagaagaaagctgtcgatatagaacatgaaagccatcaaggaatttctaaaacaaaagctcttttgagagaaaaggtttggtttacaggaatcaatgaacttgttaaagcaactcttgaatcatgtttaacatgtcaagcagtaggaaaagcagcacctccagaaccagttcgacttacaagtatgccagaagcaccatgggacttggtacatgttgactttgttggaccattcccatcgagtgaatatctgttattagtcatagatcgttattcgcgttatccagaggtagagacagttcgttcaaagagagcatcgattatcatacctaaattggataagatatttgctacacatggtattccgtccattattaaatcagacaatggaccaccattctcgagtaatgagctcagcaattattgcacagcacttggaataaaccatgacccagtaacacagtattggcccaatcaaatggagcagtggagagatttaatcaaccacttgagaaagcgatacaaacagccgtactaggaggaagagtttggagacaagaaataaatcttttcttattgcaatatcgtacaactccccacagtgtaaccaaagttgcaccttgtgaactttctagaaaagctgccgagcattgaaagaaagcttgttgtagatagagacgtcgaagcacgtgaaaaccaggttaaaagttaaacttaccacaagcaatatgcggacaaacgtagaaacgccaaagaaagcactataaccgtt

Transcript

scaffold446.g2.t1

NNNNAATgtaaaaaaggcaaacgaagtcaaactggtgcctgagtcatgggtaagtgcattattcagctctagaattttaccattactttttaagtgcaatggaatgagttttaagcgaggacaagcttaggcccaaatgatatctctaccagaaatcattagaaattgcctccaattttgagatatgatagcagtaaaggagtttgggttattgctgagatttagcttatgagaagtaccatactagagggcaataatcaaaattttaatatacaaagctctggacaagaatcttcttttcattaaagccaatatattgtttcagtctttttaaaacattgagttgtgatgcggcttttctgcaaatttcagagatatgctgttcaaagttcagtttatgatctagttgaatacctagcaatttaaccgtttcttccgatttgattatttttccttggatgttgaaattttctccacttgtattcgttcgatCCTGCATCCAAGTACTGCATCCAAGTGGTGTTCTTACTGCATATGTTTCATCATGTTCCCCTTATTCTACTTCAAGCTGGCGCAACAGACTTGGGGAATCTTGGCCAATCAATAGCAAAAATTCTGATGAGAATTATGTCTATGGAATTCATCGTGAGCGTACAAAAAGCCCACAAGTAAATGTCATGGTATGTGGACATTCTTTCGAAATGGTTGTGGATACAGGTGCGACAATAACTGTCATTGATCAAGAAACCTTTTCCAAAATGAGAAATGTGAAGCTACAGAGTACACAGACAAAAGCCTTTGCATACGACTGTAAAAAACCAGTAAAATTCACAGGAAAATTCGAGGCAACCGTCGAAACAAAGAAACGTATCAACGTAGCAACATTGTATGTTGTGAAAGGTTCAAACAATAGCGGCAATTTGATGTCTCTTTCAACAGCCAAAGGGTTGGGATTGATTAGTTTGCATATCAATCAGGTGACAACAAAATATTGCAGCATAGAGAATATCTTGCAGAAACACAGCAAAATATTTTATTGCCTTGGAAAATTGAAACACACAAAAGTCCCGTTAAGCATTGACGTCAATAAAGCACCGAAAGTACAACCCCAGAGGACAATACCGTATCATGTACGTCAGAAAGTCAAAACTGCATTGAAAGAGCTAGAAGAACAGGACATTATTGAGAAAGTACCGGGCAATGAAGGAACTCCATGGGTATCACCCATAGTAGTAGTACCGAAGAAAGATGGTGGAGTAAGAAATAGTGTTGACATGCGACTTGCAAATGAGGCTATCCAAAGAATAACCCTGCCGATTATTTATCCAGACATCCTACGTCAGTTTGCAGAAACAAGAGAAAATGACAGCAGAGTAAATACATTTTTTGTTCGTAATTGCATTCCTAAAGCCATGACACTTGAAGAAATCTCAGAAGCTACTGATCAAGATCGAGTTCTTAAAGGACTTCGAGCAGCTATACGTTTGAATCAATGGGATTACGACCTCGTGAAGCCATATCACCTATTCAAAGATGAACTTACGATTGGGAAGCAGAACGTAGTTCTTAGAGGATCCAAAATTGTCATTTCACAGTCGTTACAGAAGAAAGCTGTCGATATAGAACATGAAAGCCATCAAGGAATTTCTAAAACAAAAGCTCTTTTGAGAGAAAAGGTTTGGTTTACAGGAATCAATGAACTTGTTAAAGCAACTCTTGAATCATGTTTAACATGTCAAGCAGTAGGAAAAGCAGCACCTCCAGAACCAGTTCGACTTACAAGTATGCCAGAAGCACCATGGGACTTGGTACATGTTGACTTTGTTGGACCATTCCCATCGAGTGAATATCTGTTATTAGTCATAGATCGTTATTCGCGTTATCCAGAGGTAGAGACAGTTCGTTCAAAGAGAGCATCGATTATCATACCTAAATTGGATAAGATATTTGCTACACATGGTATTCCGTCCATTATTAAATCAGACAATGGACCACCATTCTCGAGTAATGAGCTCAGCAATTATTGCACAGCACTTGGAATAAACCATGACCCAGTAACACAGTATTGGCCCAATCAAATGGAGCAGTGGAGAGATTTAATCAACCACTTGAGAAAGCGATACAAACAGCCGTACTAGGAGGAAGAGTTTGGAGACAAGAAATAAATCTTTTCTTATTGCAATATCGTACAACTCCCCACAGTGTAACCAAAGTTGCACCTTGTGAACTTTCTAGAAAAGCTGCCGAGCATTGAAAGAAAGCTTGTTGTAGATAGAGACGTCGAAGCACGTGAAAACCAGGTTAAAAGTTAAACTTACCACAAGCAATATGCGGACAAACGTAGAAACGCCAAAGAAAGCACTATAACCGTT

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00077 all species →	RVP	Retroviral aspartyl protease	Domain	Interproscan
PF17921 all species →	Integrase_H2C2	Integrase zinc binding domain	Domain	Interproscan
PF00665 all species →	rve	Integrase core domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR043502 all species →	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR021109 all species →	Homologous_superfamily	Aspartic peptidase domain superfamily	Interproscan
IPR001584 all species →	Domain	Integrase, catalytic core	Interproscan
IPR018061 all species →	Domain	Retropepsins	Interproscan
IPR001969 all species →	Active_site	Aspartic peptidase, active site	Interproscan
IPR050951 all species →	Family	Retrovirus-related Pol polyprotein	Interproscan
IPR041588 all species →	Domain	Integrase zinc-binding domain	Interproscan
IPR012337 all species →	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR036397 all species →	Homologous_superfamily	Ribonuclease H superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR37984 all species →	PROTEIN CBG26694	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0015074 all species →	Biological Process	DNA integration	Interproscan
GO:0004190 all species →	Molecular Function	aspartic-type endopeptidase activity	Interproscan
GO:0006508 all species →	Biological Process	proteolysis	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for scaffold446.g2.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.