Gene detail

Detailed information of scaffold447.g3.t1 in Aurelia aurita complex sp. Pacific

Genomic Location: scaffold447:25747...36594
NR annotation: no NCBI-NR hit recorded
Species Aurelia aurita complex sp. Pacific · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

scaffold447.g3.t1

catctattttgaaacccataacccaaattggagaagacctgtatgtgtttgaattttttagctgaaaccaaattcatcccttgtttttaacgattttttcactgatttaaactcaagcaaataacagccgtgattcttagttattaatgtactttttcaaattgcatcattgatataaatgtattatattgcggtaggtctgtcgcaagaagcaaaataaaagtaacacttattagttcggaactacacgtcagcttggggaagctccggagactttcacgattacctcttccatatggatttcggcggcttcctgttgcatgcctctttgctccatcttttctatcttatactcttgaaagagcattacaattatgcgggcaacgagcagaattacagagatgatcaaaatggcaaagataaggacttggttattctttccgtttgaccagtcgggtttaagaattccagcaaaagctgcaacaaaggcaacatattccacgaacactcctcgcatgtaatcacggaaaacgacattttgtaatgtgaaccaaaggagcataccgaaaagtaaaagtaccaaaactgctgtcgccgttttagtcccaaacaggccagttttatattcaaggtatattatcagattaagacacattatgaatatcacccaggaaatataaaacgaaatgccattttgagcatagaagaggaaagcgacgtcaaatttctgttgctgacttggttgatttccatcctcctcttctcttgatagtctttgatggtattggtgcccagcacatgaactgtttattaaacttagtgccagagtcaatgaaacaatgcatatcaagattaacaacagttcaagctgtgcccttgcccatgcaaaaaaccaaagcgaaaaacacacgctcgagaacataaagtagacgtagaattttgttgggaaaacatcagtaggattttctctcgatatgaagccaatcgtgtagaagagccaaatctgtagaaatatgatgaatccccataaatttttaaaagttttgtcacttggtgttatgtcgctgataaatttattctttacgctgacttgagcatgtggaaatacaggcgaaggctttgtagatatgtacattacagcagccaggccaatgaaagcaattacgtttgctgcaattagtactctttttgcatgcatattgattatcgtcggccgcactttgaagtttgtaattcttcgttgcttcttttaacgtgacgttgctttggtcaattcaaatttgggtatccttgttatgttacatggagctatgttgagttgtggatacctgctatttgagcaaatactgttcttaaaagccgtgaaagtgtgcatgcagggcaaacatattgtggaaggtccaattgcgtgttgtaaaaaccagacccaaacccaaaagagaaccgcatagcatatttcaaaacaagttagggcctgcatagacggtggtgtcttgcataaaatagaaatttgataaacaagatggctgtcgtcatgccaaaggaacacccgaaaagaatgcttggtcaaggcataagttatgaggaaaaatcagatcacacacctatcaaatcattgatttgctgtattgttggggtagcactgatttgcctagtcgcacagtctgtttatctcagtaagctgcttggtgcattggaacgaaaggtggccttcaaggcgagagattatcgctcaacgaatgccttacctgatcttgctcgaatgaagtttaccacatatcatatgagaaagcaacagttaagaatgtcgaaaaggatctcagaattagagaagcaagtggaatatacacgtacctgggtgcatatttattcatcagataagaggcgagccagaagaagcgcctggcaacagaccaatgaggagtatatgttattcaagcttatacgaggggcatcattgtcaaagaaaaacaacaatacagtgatatgtatgcccgggcagaagggggaaaagggcgacagaggagcaaaaggcaaagctggccctcgtggtttaaaaggagacccaggaactaatgggccgaaaggagcaagtggaccggtcggttttcgtggtagaaagggggagaagggccaaaaaggagataatggggctacaggtattcctggtaggtcagttcaaaagccaaagatcgtttcgcatttgccatcaatcacaaaagttgaaggttccactttgattgtaggctgtgagactacaggccacccagagcccaaagtgacctggactttcaacggaaaacagatcgacagacgatataaattcccaactaaaggaatcctaagggtagagaacattagctactcagatagaggggatatgaattgtctcgcagagaacatatttgggaaagacatcagaagtatgaaattagatgtacacacaaaacctgtggtatctttagtcagcatagtggagaccagagaaggcaacacaattggacttgaatgtaacagcacagggaacccaactccaacaataagatggcgaaaggccgttggttatatgcgtggcatagaatcacagtttggtagcagtaccagaagattggtcataaacaaaacagttattggagacagtgggcactatgtttgcacagctgataacaaaattggccaggatagcaagacagttctcgtcgttgtttcttcttcgaagccagactgctcaacatggcgagaaagaggctatacaaaaagtggtgtgtactcaatttcaccagatgggggcttgccatttgacgtattctgtgacatggagaccggggttaaaggatggactgttttccaaagaagggctgatggaacagaagaattcttttcgcgaagatggaatgactataaagttggatttggaacacttacgaacgaattttggctcggtaatgacaaaattcaccgaataacacaacgaggaaatatgatggttcgctttgatctcgaagattatactggaaagaaagtgtacgccgaatatgattcgttttcggtcgagggcgagagaacaaaatataaggttcatgctgggaaatattctggcaatgccggtgattccttcaaaaggcacaatggaagaccattttcaacacgtgaaatgggaggctgtgcagcaagctatggagcatggtggtatgaaaactgtcactactcaaacctgaatggaatgtacttaaggggtgatcacaagtcatatgccaatggagttaattggtatcactttaaagggtatcatcattcgatgagaaggactgagatcaaagtcagaccgaaatgattaagaatgactgttcacattgttctcattcggtagtagcaatgagcatattttataaatgagcatcataaaatcttctaaatttagtatactgtatatttaattttttaatgcgctctgtgtctgtctgaccacgcaaccccttcctcctccgtcaccttttctaaggggtctccatgtataccttgccttgcaggtgaggggtgtcatcggtgtttcgcgcttggcgtcggttggtgggtctatgggggacaggggggagagcttgcagcatagattgcatgcaacaagatatcaaatgtggagtacctcagggctcttgccttggtccactcctatttctgatatacgttaatgacttgccgtttgccttggacagaactagggccacaatgtatgcggatgaaacgagcatttcttactccttgagatctgttactgatttgacccaagtcataaatactgatctagatagcattcgtttatggttagagggcaataaactttctctaaatgttgccaaaactcaaagcataattctgggttctggcgtacgattgcggagtcttggacgaaacgatgatagcgctagtcccgactttcaaatcaatgaggataggatagcctttaaaagtaatgtgaaatatctcggtgtacaaattgattcccaactaagttggaaagaacatagtcgcactcagtaagatttcacaaggagtaggaatgctgaagtattccaaaaaatttctgtctttagagactgcccagaaattttatttaggcatagtagaaccacatatcagatattttgctccgtctggggtggcgctggcgatacagtcctacaaaagctccaaagaatacagaatcgagctgctcgcatcgttacaaacagtccttttgacaaagcatcactgccgtcgatttctcaacttgggtggctaaatataaaagaaatgattaatttcgaaactgctaccatggtttataaatcgctccatggactagcccctccttacatgcaggacatgtttcacaaactgtctgattgtaggaatcgagtcctacggagtactgaaacagatcttgagatcccacgttataaatcatctaatgggcaacgaagcttttcgtatcgcggagtgactgtttggaaccaattgagccccgaacttaaaaccgccccgtcactggcgatttttaaaaacaggctcaagaccttttcgaaaaatcatagatatatccccggatgaagactattacatcgaaaccagtgtttggtcaatttttcttttcttttctcttcaaattgagattttcttccttgtatttattgtagagtttatatcatagatacaccatgtaattaggttagattttattgttttttttagcagggcacattgtaaaacagttttcttatatataaactgaatgtattacc

Transcript

scaffold447.g3.t1

CATCTATTTTGAAACCCATAACCCAAATTGGAGAAGACCTGTATGTGTTTGAATTTTTTAGCTGAAACCAAATTCATCCCTTGTTTTTAACGATTTTTTCACTGATTTAAACTCAAGCAAATAACAGCCGTGATTCTTAGTTATTAATGTACTTTTTCAAATTGCATCATTGATATAAATGTATTATATTGCGGTAGGTCTGTCGCAAGAAGCAAAATAAAAGTAACACTTATTAGTTCGGAACTACACGTCAGCTTGGGGAAGCTCCGGAGACTTTCACGATTACCTCTTCCATATGGATTTCGGCGGCTTCCTGTTGCATGCCTCTTTGCTCCATCTTTTCTATCTTATACTCTTGAAAGAGCATTACAATTATGCGGGCAACGAGCAGAATTACAGAGATGATCAAAATGGCAAAGATAAGGACTTGGTTATTCTTTCCGTTTGACCAGTCGGGTTTAAGAATTCCAGCAAAAGCTGCAACAAAGGCAACATATTCCACGAACACTCCTCGCATGTAATCACGGAAAACGACATTTTGTAATGTGAACCAAAGGAGCATACCGAAAAGTAAAAGTACCAAAACTGCTGTCGCCGTTTTAGTCCCAAACAGGCCAGTTTTATATTCAAGGTATATTATCAGATTAAGACACATTATGAATATCACCCAGGAAATATAAAACGAAATGCCATTTTGAGCATAGAAGAGGAAAGCGACGTCAAATTTCTGTTGCTGACTTGGTTGATTTCCATCCTCCTCTTCTCTTGATAGTCTTTGATGGTATTGGTGCCCAGCACATGAACTGTTTATTAAACTTAGTGCCAGAGTCAATGAAACAATGCATATCAAGATTAACAACAGTTCAAGCTGTGCCCTTGCCCATGCAAAAAACCAAAGCGAAAAACACACGCTCGAGAACATAAAGTAGACGTAGAATTTTGTTGGGAAAACATCAGTAGGATTTTCTCTCGATATGAAGCCAATCGTGTAGAAGAGCCAAATCTGTAGAAATATGATGAATCCCCATAAATTTTTAAAAGTTTTGTCACTTGGTGTTATGTCGCTGATAAATTTATTCTTTACGCTGACTTGAGCATGTGGAAATACAGGCGAAGGCTTTGTAGATATGTACATTACAGCAGCCAGGCCAATGAAAGCAATTACGTTTGCTGCAATTAGTACTCTTTTTGCATGCATATTGATTATCGTCGGCCGCACTTTGAAGTTTGTAATTCTTCGTTGCTTCTTTTAACGTGACGTTGCTTTGGTCAATTCAAATTTGGGTATCCTTGTTATGTTACATGGAGCTATGTTGAGTTGTGGATACCTGCTATTTGAGCAAATACTGTTCTTAAAAGCCGTGAAAGTGTGCATGCAGGGCAAACATATTGTGGAAGGTCCAATTgcgtgttgtaaaaaccagaccCAAACCCAAAAGAGAACCGCATAGCATATTTCAAAACAAGTTAGGGCCTGCATAGACGGTGGTGTCTTGCATAAAATAGAAATTTGATAAACAAGATGGCTGTCGTCATGCCAAAGGAACACCCGAAAAGAATGCTTGGTCAAGGCATAAGTTATGAGGAAAAATCAGATCACACACCTATCAAATCATTGATTTGCTGTATTGTTGGGGTAGCACTGATTTGCCTAGTCGCACAGTCTGTTTATCTCAGTAAGCTGCTTGGTGCATTGGAACGAAAGGTGGCCTTCAAGGCGAGAGATTATCGCTCAACGAATGCCTTACCTGATCTTGCTCGAATGAAGTTTACCACATATCATATGAGAAAGCAACAGTTAAGAATGTCGAAAAGGATCTCAGAATTAGAGAAGCAAGTGGAATATACACGTACCTGGGTGCATATTTATTCATCAGATAAGAGGCGAGCCAGAAGAAGCGCCTGGCAACAGACCAATGAGGAGTATATGTTATTCAAGCTTATACGAGGGGCATCATTGTCAAAGAAAAACAACAATACAGTGATATGTATGCCCGGGCAGAAGGGGGAAAAGGGCGACAGAGGAGCAAAAGGCAAAGCTGGCCCTCGTGGTTTAAAAGGAGACCCAGGAACTAATGGGCCGAAAGGAGCAAGTGGACCGGTCGGTTTTCGTGGTAGAAAGGGGGAGAAGGGCCAAAAAGGAGATAATGGGGCTACAGGTATTCCTGGTAGGTCAGTTCAAAAGCCAAAGATCGTTTCGCATTTGCCATCAATCACAAAAGTTGAAGGTTCCACTTTGATTGTAGGCTGTGAGACTACAGGCCACCCAGAGCCCAAAGTGACCTGGACTTTCAACGGAAAACAGATCGACAGACGATATAAATTCCCAACTAAAGGAATCCTAAGGGTAGAGAACATTAGCTACTCAGATAGAGGGGATATGAATTGTCTCGCAGAGAACATATTTGGGAAAGACATCAGAAGTATGAAATTAGATGTACACACAAAACCTGTGGTATCTTTAGTCAGCATAGTGGAGACCAGAGAAGGCAACACAATTGGACTTGAATGTAACAGCACAGGGAACCCAACTCCAACAATAAGATGGCGAAAGGCCGTTGGTTATATGCGTGGCATAGAATCACAGTTTGGTAGCAGTACCAGAAGATTGGTCATAAACAAAACAGTTATTGGAGACAGTGGGCACTATGTTTGCACAGCTGATAACAAAATTGGCCAGGATAGCAAGACAGTTCTCGTCGTTGTTTCTTCTTCGAAGCCAGACTGCTCAACATGGCGAGAAAGAGGCTATACAAAAAGTGGTGTGTACTCAATTTCACCAGATGGGGGCTTGCCATTTGACGTATTCTGTGACATGGAGACCGGGGTTAAAGGATGGACTGTTTTCCAAAGAAGGGCTGATGGAACAGAAGAATTCTTTTCGCGAAGATGGAATGACTATAAAGTTGGATTTGGAACACTTACGAACGAATTTTGGCTCGGTAATGACAAAATTCACCGAATAACACAACGAGGAAATATGATGGTTCGCTTTGATCTCGAAGATTATACTGGAAAGAAAGTGTACGCCGAATATGATTCGTTTTCGGTCGAGGGCGAGAGAACAAAATATAAGGTTCATGCTGGGAAATATTCTGGCAATGCCGGTGATTCCTTCAAAAGGCACAATGGAAGACCATTTTCAACACGTGAAATGGGAGGCTGTGCAGCAAGCTATGGAGCATGGTGGTATGAAAACTGTCACTACTCAAACCTGAATGGAATGTACTTAAGGGGTGATCACAAGTCATATGCCAATGGAGTTAATTGGTATCACTTTAAAGGGTATCATCATTCGATGAGAAGGACTGAGATCAAAGTCAGACCGAAATGATTAAGAATGACTGTTCACATTGTTCTCATTCGGTAGTAGCAATGAGCATATTTTATAAATGAGCATCATAAAATCTTCTAAATTTAGTATACTGTATATTTAATTTTTTAATGCGCTCTGTGTCTGTCTGACCACGCAACCCCTTCCTCCTCCGTCACCTTTTCTAAGGGGTCTCCATGTATACCTTGCCTTGCAGGTGAGGGGTGTCATCGGTGTTTCGCGCTTGGCGTCGGTTGGTGGGTCTATGGGGGACAGGGGGGAGAGCTTGCAGCATAGATTGCATGCAacaagatatcaaatgtggagtacctcagggctcttgccttggtccactcctatttctgatatacgttaatgacttgccgtttgccttggacagaactagggccacaatgtatgcggatgaaacgagcatttcttactccttgagatctgttactgatttgacccaagtcataaatactgatctagatagcattcgtttatggttagagggcaataaactttctctaaatgttgccaaaactcaaagcataattctgggttctggcgtacgattgcggagtcttggacgaaacgatgatagcgctagtcccgactttcaaatcaatgaggataggatagcctttaaaagtaatgtgaaatatctcggtgtacaaattgattcccaactaagttggaaagaacatagtcgcactcagtaagatttcacaaggagtaggaatgctgaagtattccaaaaaatttctgtctttagagactgcccagaaattttatttaggcatagtagaaccacatatcagatattttgctccgtctggggtggcgctggcgatacagtcctacaaaagctccaaagaatacagaatcgagctgctcgcatcgttacaaacagtccttttgacaaagcatcactgccgtcgatttctcaacttgggtggctaaatataaaagaaatgattaatttcgaaactgctaccatggtttataaatcgctccatggactagcccctccttacatgcaggacatgtttcacaaactgtctgattgtaggaatcgagtcctacggagtactgaaacagatcttgagatcccacgttataaatcatctaatgggcaacgaagcttttcgtatcgcggagtgactgtttggaaccaattgagccccgaacttaaaaccgccccgtcactggcgatttttaaaaacaggctcaagaccttttcgaaaaatcatagatatatccccggatgaagactattacatcgaaaccagtgtttggtcaatttttcttttcttttctcttcaaattgagattttcttccttgtatttattgtagagtttatatcatagatacaccatgtaattaggttagattttattgttttttttagcagggcacattgtaaaacagttttcttatatataaactgaatgtattacc

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00147 all species →	Fibrinogen_C	Fibrinogen beta and gamma chains, C-terminal globular domain	Domain	Interproscan
PF07679 all species →	I-set	Immunoglobulin I-set domain	Domain	Interproscan
PF01391 all species →	Collagen	Collagen triple helix repeat (20 copies)	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR036056 all species →	Homologous_superfamily	Fibrinogen-like, C-terminal	Interproscan
IPR014716 all species →	Homologous_superfamily	Fibrinogen, alpha/beta/gamma chain, C-terminal globular, subdomain 1	Interproscan
IPR007110 all species →	Domain	Immunoglobulin-like domain	Interproscan
IPR002181 all species →	Domain	Fibrinogen, alpha/beta/gamma chain, C-terminal globular domain	Interproscan
IPR003598 all species →	Domain	Immunoglobulin subtype 2	Interproscan
IPR013098 all species →	Domain	Immunoglobulin I-set	Interproscan
IPR050373 all species →	Family	Fibrinogen C-terminal domain-containing protein	Interproscan
IPR008160 all species →	Repeat	Collagen triple helix repeat	Interproscan
IPR036179 all species →	Homologous_superfamily	Immunoglobulin-like domain superfamily	Interproscan
IPR003599 all species →	Domain	Immunoglobulin subtype	Interproscan
IPR020837 all species →	Conserved_site	Fibrinogen, conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR19143 all species →	FIBRINOGEN/TENASCIN/ANGIOPOEITIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005615 all species →	Cellular Component	extracellular space	Interproscan
GO:0062023 all species →	Cellular Component	collagen-containing extracellular matrix	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for scaffold447.g3.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.