Gene detail

Detailed information of scaffold45.g13.t1 in Morbakka virulenta

Genomic Location: scaffold45:378362...383875
NR annotation: XP_047127971.1, PAN2-PAN3 deadenylation complex catalytic subunit PAN2 isoform X1 [Hydra vulgaris]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

Protein

Uniprot

Uniprot term	Description
A1Z7K9	PAN2-PAN3 deadenylation complex catalytic subunit PAN2 OS=Drosophila melanogaster OX=7227 GN=PAN2 PE=1 SV=1
Q2ULU6	PAN2-PAN3 deadenylation complex catalytic subunit pan2 OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) OX=510516 GN=pan2 PE=3 SV=1
P53015	PolyA-specific ribonuclease subunit panl-2 OS=Caenorhabditis elegans OX=6239 GN=panl-2 PE=4 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF20770	PAN2_N	PAN2 N-terminal	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR048841	Domain	PAN2-PAN3 deadenylation complex catalytic subunit PAN2, N-terminal	Interproscan
IPR015943	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR050785	Family	PAN2-PAN3 complex catalytic subunit	Interproscan
IPR036322	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15728	DEADENYLATION COMPLEX CATALYTIC SUBUNIT PAN2	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0000289	Biological Process	nuclear-transcribed mRNA poly(A) tail shortening	Interproscan
GO:0000932	Cellular Component	P-body	Interproscan
GO:0004535	Molecular Function	poly(A)-specific ribonuclease activity	Interproscan
GO:0031251	Cellular Component	PAN complex	Interproscan