Gene detail

Detailed information of scaffold45.g77.t1 in Aurelia aurita

Genomic Location: scaffold45:987394...996493
NR annotation: no NCBI-NR hit recorded
Species abbreviation AAURI1 · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

scaffold45.g77.t1

cactcctgtttacataagatttacatgttggctgcaaaattattttggatctaatcaaaagcacagtcaaaagtcttattttcaaatcttctcattttacgccagtgattagagtgtccttgatttgttagatttgtttcgttgtgacatcgaggtgcgaggagtcaacttagtaatttttgtaatgcgaggaggtaacaattggaaaaaaacttatttgcgaggagtcctgatggcgttaaatgcgatgtggagaggaggggttaattttttgaccccatgtacacccacgaaattgggaataggaaatcactataatcggactggggttcaaacgcgtattgttacttgatttctctgcagaacatttcctctgacatccattgacccacgtggtcaaatttggcgcccatgtgagcatcctttcactctggcggcttgccttctgattggttaatttaaataagtaaccaatcagagatcgaattgaggtcacatggtgtgaggtgcgcgtgacttgttgttttggtgtttccacctcagtaacaaatttgcgatcgaagccgaagactgcagtgaaacaaatccgcattatttataacaaaaatgagcctagaaactttgctagaggctgcaaagatacttcaagaccaagataatggtattttgttttcatcgccgctaaaatgcaaagaaaggaaagcaacacgaagatcacaaacttacagggcgactcataaccaacttgaaaagaatagacgtgcacacttgagagactgcctaacctccttgagggatcttgttccaacgccacctgaccaaacgaaagcgacgacattgagtcttctccagagtgcgaagcaatatatcaaagtccttgaagtccatgacaaagaagcacaaataataaaaaagaaactgttttctgagcagcaaaaacttaggagaaaactgactggtcttgtctcaggatcacatcttgaagagacgccatgtaaagcaccaaaactcgactgtgaagaaatagatgttgaaaatgacgatgaaactgggtatggatcaggggatgacaggagcagcacagatagctcagggagccattagctgcgaaatgtggttttatgaagaagaaatttctcaatcctgaaattatttgtacaaaatgcacagaatgtggactgccaatgctcaaagcaacaatgatggaatctaaattcaaatgcataagatgtctagaagacattcattctggaaatgaatgaaaaattaataatcactctttctatcatgctgcttatacaatacgtttccaaactccaagcctgatattttccccatcatttcccagcaaatagagatgaatttaatcaaatgttgcttgcccaaaaagaagttttattatcattgggaactgggtattttgagtggagtgaattctgcaaaaaaggcctaaatttgtaatttgtaagcaagccattttacatcaattgaggcaaagctgatttctctgcagtgcagccaataggacaagcaaatagaataaaatgaagcacagaaaatgttcaacaaatagtttattctatttatattaaaaattatgccctttctgtgcccaagattcttacgctgtattcaccactggaattgttttgcaaacgttgcactaataaggcttgcattttatgacacaagccttacttgagcagatttgtgtctcatttgaatagcagcaattaagactttttccaatgtgaattcagtattaaggctggtttccagtcaatgcagttttccaagcggacgggagtcctattgtttacgagagaaaatgttgctttgaatttgaatagaaagttacgcctgagtaaccttttattgtgtacattccacccgcttggaaaattgcactgactggaaatcagcctttagagatgatttcattcaatatgttatggtaagcatttattcccttagatttcttcattgtacagtttaaacgaaaccaagtaaatagatctccatgtgtatgattttagtattgaaatatcataaaactttcaaagaaatgtggcagcttggaatgagagcttggaaaattcaatggtagaataatagcaaaatagctaaagtttatttcaagccattcaatcgaaagaaagatgcaatagcatttacacttagccttttaaagatttaacgtctatgctggtctgaaacatcaccagtgtggctagatgctactttgatatgaattacatagatattttcacctgcttctacaacaaagaatgctattaatttggcaaatattattgaactaagcattgcttctcattatgtagtaagccccaggtaccagtaaaaagcatggtgtctgcttgtttttaatggcaataaaaattcacctttcatgaatgtttggactaatcattgcacatttttgcaaattgtttgtactaattaagcaccaattgtgacttggtcaaaaagtgctgttatcaaccttatatggaagaatttttggagtttattctgatagatggtaaatttttgctgaaatttcttgctctattattattcaaattcccctttgaaaatcgtgtcttaagctctgcttttatacaagctacagtcttatttgtggaattttgtagcaacggtatgtgaataatttgtaaacccagaagactgcaaaattccccacagaccattcctcgattatgaaaagagacggagtgtgcatggcccgttctattttgtcatgttgctctctttccaagctgtcacaactctagtcttaaatgtgattgttttgtcacaattttggggctgttgtaaagcccttctactctttagctgtcttgaaattgttttatctgctaaattaagttatttgtgatatcttctctttagtccgtagccaaaaatgatcatgaaaattgtaaataaagcttggaaatataaacgaggcaatattttgttccatgttcccttgatagtgtgcagaggcgctgcagaattgcgctaggtggatttagaagtaaatttatcaactcttg

Transcript

scaffold45.g77.t1

cactcctgtttacataagatttacatgttggctgcaaaattattttggatctaatcaaaagcacagtcaaaagtcttattttcaaatcttctcattttacgccagtgattagagtgtccttgatttgttagatttgtttcgttgtgacatcgaggtgcgaggagtcaacttagtaatttttgtaatgcgaggaggtaacaattggaaaaaaacttatttgcgaggagtcctgatggcgttaaatgcgatgtggagaggaggggttaattttttgaccccatgtacacccaCGAAATTGGGAATAGGAAATCACTATAATCGGACTGGGGTTCAAACGCGTATTGTTACTTGATTTCTCTGCAGAACATTTCCTCTGACATCCATTGACCCACGTGGTCAAATTTGGCGCCCATGTGAGCATCCTTTCACTCTGGCGGCTTGCCTTCTGATTGGTTAATTTAAATAAGTAACCAATCAGAGATCGAATTGAGGTCACATGGTGTGAGGTGCGCGTGACTTGTTGTTTTGGTGTTTCCACCTCAGTAACAAATTTGCGATCGAAGCCGAAGACTGCAGTGAAACAAATCCGCATTATTTATAACAAAAATGAGCCTAGAAACTTTGCTAGAGGCTGCAAAGATACTTCAAGACCAAGATAATGGTATTTTGTTTTCATCGCCGCTAAAATGCAAAGAAAGGAAAGCAACACGAAGATCACAAACTTACAGGGCGACTCATAACCAACTTGAAAAGAATAGACGTGCACACTTGAGAGACTGCCTAACCTCCTTGAGGGATCTTGTTCCAACGCCACCTGACCAAACGAAAGCGACGACATTGAGTCTTCTCCAGAGTGCGAAGCAATATATCAAAGTCCTTGAAGTCCATGACAAAGAAGCACAAATAATAAAAAAGAAACTGTTTTCTGAGCAGCAAAAACTTAGGAGAAAACTGACTGGTCTTGTCTCAGGATCACATCTTGAAGAGACGCCATGTAAAGCACCAAAACTCGACTGTGAAGAAATAGATGTTGAAAATGACGATGAAACTGGGTATGGATCAGGGGATGACAGGAGCAGCACAGATAGCTCAGGGAGCCATTAGCTGCGAAATGTGGTTTTATGAAGAAGAAATTTCTCAATCCTGAAATTATTTGTACAAAATGCACAGAATGTGGACTGCCAATGCTCAAAGCAACAATGATGGAATCTAAATTCAAATGCATAAGATGTCTAGAAGACATTCATTCTGGAAATGAATGAAAAATTAATAATCACTCTTTCTATCATGCTGCTTATACAATACGTTTCCAAACTCCAAGCCTGATATTTTCCCCATCATTTCCCAGCAAATAGAGATGAATTTAATCAAATGTTGCTTGCCCAAAAAGAAGTTTTATTATCATTGGGAACTGGGTATTTTGAGTGGAGTGAATTCTGCAAAAAAGGCCTAAATTTGTAATTTGTAAGCAAGCCATTTTACATCAATTGAGGCAAAGCTGATTTCTCTGCAGTGCAGCCAATAGGACAAGCAAATAGAATAAAATGAAGCACAGAAAATGTTCAACAAATAGTTTATTCTATTTATATTAAAAATTATGCCCTTTCTGTGCCCAAGATTCTTACGCTGTATTCACCACTGGAATTGTTTTGCAAACGTTGCACTAATAAGGCTTGCATTTTATGACACAAGCCTTACTTGAGCAGatttgtgtctcatttgaatagcagcaattaagactttttccaatgtgaattcagtattaaggctggtttccagtcaatgcagttttccaagcggacgggagtcctattgtttacgagagaaaatgttgctttgaatttgaatagaaagttacgcctgagtaaccttttattgtgtacattccacccgcttggaaaattgcactgactggaaatcagcctttagagATGATTTCATTCAATATGTTATGGTAAGCATTTATTCCCTTAGATTTCTTCATTGTACAGTTTAAACGAAACCAAGTAAATAGATCTCCATGTGTATGATTTTAGTATTGAAATATCATAAAACTTTCAAAGAAATGTGGCAGCTTGGAATGAGAGCTtggaaaattcaatggtagaataatagcaaaatagctaaagtttatttcaagccattcaatcgaaagaaagatgcaatagcatttacacttagccttttaaagatttaacgtctatgctGGTCTGAAACATCACCAGTGTGGCTAGATGCTACTTTGATATGAATTACATAGATATTTTCACCTGCTTCTACAACAAAGAATGCTATTAATTTGGCAAATATTATTGAACTAAGCATTGCTTCTCATTATGTAGTAAGCCCCAGGTACCAGTAAAAAGCATGGTGTCTGCTTGTTTTTAATGGCAATAAAAATTCACCTTTCATGAATGTTTGGACTAATCATTGCACATTTTTGCAAATTGTTTGTACTAATTAAGCACCAATTGTGACTTGGTCAAAAAGTGCTGTTATCAACCTTATATGGAAGAATTTTTGGAGTTTATTCTGATAGATGGTAAATTTTTGCTGAAATTTCTTGCTCTATTATTATTCAAATTCCCCTTTGAAAATCGTGTCTTAAGCTCTGCTTTTATACAAGCTACAGTCTTATTTGTGGAATTTTGTAGCAACGGTATGTGAATAATTTGTAAACCCAGAAGACTGCAAAATTCCCCACAGACCATTCCTCGATTATGAAAAGAGACGGAGTGTGCATGGCCCGTTCTATTTTGTCATGTTGCTCTCTTTCCAAGCTGTCACAACTCTAGTCTTAAATGTGATTGTTTTGTCACAATTTTGGGGCTGTTGTAAAGCCCTTCTACTCTTTAGCTGTCTTGAAATTGTTTTATCTGCTAAATTAAGTTATTTGTGATATCTTCTCTTTAGTCCGTAGCCAAAAATGATCATGAAAATTGTAAATAAAGCTTGGAAATATAAACGAGGCAATATTTTGTTCCATGTTCCCTTGATAGTGTGCAGAGGCGCTGCAGAATTGCGCTAGGTGGATTTAGAAGTAAATTTATCAACTCTTG

Protein

Gene family

Family type	Membership / link
Transcription factor family	bHLH · all TF in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00010 all species →	HLH	Helix-loop-helix DNA-binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036638 all species →	Homologous_superfamily	Helix-loop-helix DNA-binding domain superfamily	Interproscan
IPR011598 all species →	Domain	Myc-type, basic helix-loop-helix (bHLH) domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11969 all species →	MAX DIMERIZATION, MAD	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0046983 all species →	Molecular Function	protein dimerization activity	Interproscan
GO:0000978 all species →	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981 all species →	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K09114	MXD, MAD; MAX dimerization protein	-	Transcription factors	ko03000	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.