Gene detail

Detailed information of scaffold452.g7.t3 in Aurelia aurita complex sp. Pacific

Genomic Location: scaffold452:75747...105164
NR annotation: no NCBI-NR hit recorded
Species Aurelia aurita complex sp. Pacific · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

scaffold452.g7.t3

gtttggtgtgtatgattcattcatacataaagtacttgaagaaaacaatataaattccttatcagttactcccaagccaagatggccgccgcggaactgggagtgctcccgtttgttcggggaatagatctgtcgagaaatgactttcaggacacatttccaggcaaggttggtaacatgggtaacctcagatggttgaggttagacaattcaaaccttgaaaagctacctgacacacttggtaatctttcaaagctggaacatttatcattggtaaaaaataatttgacatcacttcatggagacattccggctttatccaacctgaaggtcataaatgcaagacacaatgaactgaaaaatcatggcgttccttcagaaatgttcaagttagatgatctcctcactgtggaacatttatcactggtaaaaaataatttaacatcacttcatggagacattcctgctttatccaacctgaaggtcataaatgcaagacacaatgaactgaaaaatcacggcgttccttcagaaatgttcaagttggatgatctcctcactgtggatttgagtcataaccacttggaagaagttcctgaagaagcagaaaatgcaacaagtctccttgtattgaacctcagccataacaaaattacttccattccaaaccagttgtttatgaacttgacagatctcatctacttggacctgagtgacaatctcatagaaactatcccaccacagttaagaagacttactggcttgcaaactctgatcttgaataataacccattgctccatgcacagctaaggcagctaccatcgcttctacaacttcacacattgcatttgagaaacacacagagaactatatccaatatgccaaacaaactggacaatctggaaaatttaacagatgtagacctctcacacaacgacctaccgagagtgcctgaaccaatctacagaataacaagtctaaagcgccttgacctcagtcataatcaaataacagagctttcaactcttattgattcatggaccaaactcgaaacactaaacctatctcgaaatcaactcactgctctaccgtcaaccatatgcaagcttacaagcttaaaaagactttatgtaaatggaaaccagctcacattcgaaggaattcctcttggtattggaagagggattcatttcttggccaatattaaggacttggatgtacgaaataacccacacttggttatgcctcccaagccagtgtcccaaaacgaggctgatgtggaattctataacatcgacttctcatatcagactcagctgagatacgctgcggggcattctccctccgccatacagatttctaaagacccgatcgcgaggaagctccgtctgcgtggacgtcggtatcaaaccttgactgacacatcagacaagaagttaaagatcgagaactttctacccgttccagtcgatgaagcattatttgggagattctatgatggtgactgctacatcgtagtacagacgatctatgacgacacagatcaacttgaatggcaaatatattattggataggacaacattcaacacttgacaagaaagcatgctctgcaattcatgcagtgaacctccgaaatctgcttggagcagagagcagaactcagagagaagaacaaggcgacgaaactgaagaatttttaaatctttttgaaaatggtgtctcatatattgaaggaggaactggcagtggattttttacagtcgaggaaccaccacatgttacacgaatgtacagagtcgttggaaaccaaggattccacattgaaccggttccacttgactggcattccctcgatccaaaatttgctttcatttgtgatgctggtaaacatgtttacgtttggtcaggcaaaaaggcaccattgatgacaaaaaccaaggcaaggttactcgcagaaaagatagtacgaattgaccgaaaagacaaagcggaaatccaccaaatgcatcagggtcatgaagatgatcaaccattttgggaaatagttggagaaccacacggagcagttgttgaacatcaagaatttgggcttttcaagccttccagacctattctttataaagttggacttggcatgggataccttgagttaccacaagttgaaataccaaagaagaaactctcaagagatttactcgatacgaaaaatgtatatattttggattgctggtcggagatttttatatggattggacgtcgttctgcaagactcgtcagggctgctgcgttgaaattggctcaagaactttgtacgatgctaggaagacataaaattgcgacagtaacaagaatccttgaagggtaatgatttctgttcagctagacctcgtttacactgaaccggtacggtcnnnnnnnnnnnnnnnn

Transcript

scaffold452.g7.t3

GTTTGGTGTGTATGATTCATTCATACATAAAGTACTTGAAGAAAACAATATAAATTCCTTATCAGTTACTCCCAAGCCAAGATGGCCGCCGCGGAACTGGGAGTGCTCCCGTTTGTTCGGGGAATAGATCTGTCGAGAAATGACTTTCAGGACACATTTCCAGGCAAGGTTGGTAACATGGGTAACCTCAGATGGTTGAGGTTAGACAATTCAAACCTTGAAAAGCTACCTGACACACTTGGTAATCTTTCAAAGCTGGAACATTTATCATTGGTAAAAAATAATTTGACATCACTTCATGGAGACATTCCGGCTTTATCCAACCTGAAGGTCATAAATGCAAGACACAATGAACTGAAAAATCATGGCGTTCCTTCAGAAATGTTCAAGTTAGATGATCTCCTCACTGTGGAACATTTATCACTGGTAAAAAATAATTTAACATCACTTCATGGAGACATTCCTGCTTTATCCAACCTGAAGGTCATAAATGCAAGACACAATGAACTGAAAAATCACGGCGTTCCTTCAGAAATGTTCAAGTTGGATGATCTCCTCACTGTGGATTTGAGTCATAACCACTTGGAAGAAGTTCCTGAAGAAGCAGAAAATGCAACAAGTCTCCTTGTATTGAACCTCAGCCATAACAAAATTACTTCCATTCCAAACCAGTTGTTTATGAACTTGACAGATCTCATCTACTTGGACCTGAGTGACAATCTCATAGAAACTATCCCACCACAGTTAAGAAGACTTACTGGCTTGCAAACTCTGATCTTGAATAATAACCCATTGCTCCATGCACAGCTAAGGCAGCTACCATCGCTTCTACAACTTCACACATTGCATTTGAGAAACACACAGAGAACTATATCCAATATGCCAAACAAACTGGACAATCTGGAAAATTTAACAGATGTAGACCTCTCACACAACGACCTACCGAGAGTGCCTGAACCAATCTACAGAATAACAAGTCTAAAGCGCCTTGACCTCAGTCATAATCAAATAACAGAGCTTTCAACTCTTATTGATTCATGGACCAAACTCGAAACACTAAACCTATCTCGAAATCAACTCACTGCTCTACCGTCAACCATATGCAAGCTTACAAGCTTAAAAAGACTTTATGTAAATGGAAACCAGCTCACATTCGAAGGAATTCCTCTTGGTATTGGAAGAGGGATTCATTTCTTGGCCAATATTAAGGACTTGGATGTACGAAATAACCCACACTTGGTTATGCCTCCCAAGCCAGTGTCCCAAAACGAGGCTGATGTGGAATTCTATAACATCGACTTCTCATATCAGACTCAGCTGAGATACGCTGCGGGGCATTCTCCCTCCGCCATACAGATTTCTAAAGACCCGATCGCGAGGAAGCTCCGTCTGCGTGGACGTCGGTATCAAACCTTGACTGACACATCAGACAAGAAGTTAAAGATCGAGAACTTTCTACCCGTTCCAGTCGATGAAGCATTATTTGGGAGATTCTATGATGGTGACTGCTACATCGTAGTACAGACGATCTATGACGACACAGATCAACTTGAATGGCAAATATATTATTGGATAGGACAACATTCAACACTTGACAAGAAAGCATGCTCTGCAATTCATGCAGTGAACCTCCGAAATCTGCTTGGAGCAGAGAGCAGAACTCAGAGAGAAGAACAAGGCGACGAAACTGAAGAATTTTTAAATCTTTTTGAAAATGGTGTCTCATATATTGAAGGAGGAACTGGCAGTGGATTTTTTACAGTCGAGGAACCACCACATGTTACACGAATGTACAGAGTCGTTGGAAACCAAGGATTCCACATTGAACCGGTTCCACTTGACTGGCATTCCCTCGATCCAAAATTTGCTTTCATTTGTGATGCTGGTAAACATGTTTACGTTTGGTCAGGCAAAAAGGCACCATTGATGACAAAAACCAAGGCAAGGTTACTCGCAGAAAAGATAGTACGAATTGACCGAAAAGACAAAGCGGAAATCCACCAAATGCATCAGGGTCATGAAGATGATCAACCATTTTGGGAAATAGTTGGAGAACCACACGGAGCAGTTGTTGAACATCAAGAATTTGGGCTTTTCAAGCCTTCCAGACCTATTCTTTATAAAGTTGGACTTGGCATGGGATACCTTGAGTTACCACAAGTTGAAATACCAAAGAAGAAACTCTCAAGAGATTTACTCGATACGAAAAATGTATATATTTTGGATTGCTGGTCGGAGATTTTTATATGGATTGGACGTCGTTCTGCAAGACTCGTCAGGGCTGCTGCGTTGAAATTGGCTCAAGAACTTTGTACGATGCTAGGAAGACATAAAATTGCGACAGTAACAAGAATCCTTGAAGGGTAATGATTTCTGTTCAGCTAGACCTCGTTTACACTGAACCGGTACGGTCNNNNNNNNNNNNNNNN

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13855 all species →	LRR_8	Leucine rich repeat	Repeat	Interproscan
PF00626 all species →	Gelsolin	Gelsolin repeat	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR032675 all species →	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan
IPR003591 all species →	Repeat	Leucine-rich repeat, typical subtype	Interproscan
IPR001611 all species →	Repeat	Leucine-rich repeat	Interproscan
IPR050216 all species →	Family	Leucine-rich repeat domain-containing protein	Interproscan
IPR029006 all species →	Homologous_superfamily	ADF-H/Gelsolin-like domain superfamily	Interproscan
IPR007123 all species →	Domain	Gelsolin-like domain	Interproscan
IPR007122 all species →	Family	Villin/Gelsolin	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR48051 all species →	-	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0051015 all species →	Molecular Function	actin filament binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K27496	FLII; flightless I actin remodeling protein	-	Cytoskeleton proteins	ko04812	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.