Gene detail

Detailed information of scaffold454.g4.t2 in Aurelia aurita complex sp. Pacific

Genomic Location: scaffold454:26741...36134
NR annotation: no NCBI-NR hit recorded
Species Aurelia aurita complex sp. Pacific · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

scaffold454.g4.t2

atcaaaattaactaaaaattaacactttcggcattgaaaatacaagaaacacgtaagaaacttttgatagcaaaatggcccaaaaatttaagaaactgcctaccagccccagaccttaattttttaaaaaaaatgagtgtaccctaccaaaatatagcaaaataccacaaatgctggaaaactaaaaaacatggttatcaacaacttatttcgaaggattagaaaatgactgcgatgtccacgttttaggtttttccctatactaaaagtcagcaagtgaattagcataacacatggcgctccgttggctgcaactgcttggtaagccatggcgatccaatttaaacggcaatccaaggtcaaaccggaagttggcaggatcttacaggttgcgtaatcttaaatgttctttgctcgatgttagatgttcgatgttagatgttcgatgttagatctttgatgttagatcttctatcttcgatgttagatctcgatcttcgatgttagatcttcgatgttagatcttcgatgttagatcttcgatgttagatctcgatgttagatcttcaatgttagatgttagatcttcgatgttagatctttgatgttagatctttgatgtttgatcttcgatgttagatcttcgatcttcgatgttagatcttcgatcttcgatcatagatcttcgatcttcgatgttagatcttcgatcttcgatgttagatcttcgatcttcgatgttagatcttcgatcttcgatgttagatcttcgatgttcgatgttcgatgttgcagatgatattgcaaagcaacttcgagacacaagtcaattacatctttcgccctctactatttaccttctattcatgtgtggtctcttctctgcaactgccattctacatggattggaagggacaaatttaattcatggactttggtacttgctgtgtttgccttctggttatctgttcctgacaatttattcaattgcaaatttaacagatagatcttggggcactcgagaagcgaaagcaaattcaacatcgccgaacacagtagcatggtatcgtattgcttgggaaaaattgaaaatattttgtgcaatgtgttgtcaaaggaaattctacgatgattctcaaagatctgaaattattttgtctgaaagtgatttggtatctgaaagttgtgatttagcatcggatgatggcttacgtggcacgtcatctccagacatacgaaattcagagagtgaagatgaacttggtgaaagagaaaagcccccacgacccccaaagccgcctaaaattccatccaaactattacgactgcattctactgctctaaatccaaacgacaggatgatgtctatgaaaaggaatcctcataaagttactattggtcccggcattcgattcaaatcatttaaaacacatctgccacgagcagggagtgataaagcacaagaagatgaaagaattaatactgctgttccgattgaagattttttgcatggaaaatataaagactatgtggaaaacttcaaagataatggatatgatgatactacttttttgctgagcatgaaagaacaggaattattggatattggtttaatcaatcgaggacatcgaaagaagattttggttgaaattgaaaaacttccacctgaagaaatggatcaagaagttcctgataacgtaccgcaaacaaacatccgcaaagctcgaatcgaattggataaagcatccgtcatggcacaagaatatacagaatgcaaattttgggaaagattgcgtgtcatttgtttacttccggagcaagctgcatttagtcaaagtgatgagttgagagataaattggaagagttgcgtaattctggtctgatgatgttgattgtggtcaatattctttggatcacaatcatgttgaccatcattgctcaaggcaaaaagttacaagtgctcaacaccaatttccttggcctcgcattcctatttctttacaccgtggttctgttggtacaattttgcactctcttgtggcacagagttgccacatggattcatttgatgtcacgtacgccattcaaacctggttcaaagataaacatgagttggtcgttccatgacgatgatttgccaccagaaccaaaagaagatgatttgtttgtagctcaacaaagactgaacagtcgattagagcgtagatcaagaagacgtatgggccatattgccgattctacaatgacatttcgctctatctaccctccgaagcaaagtcctccattctctattgaactgaactgaaaagtactttaatttaattgttgaatgaaatttattttcactgtatatagactagttgtatttattagcagcaagatgaacaatgaaggctgcttcgcacg

Transcript

scaffold454.g4.t2

atcaaaattaactaaaaattaacactttcggcattgaaaatacaagaaacacgtaagaaacttttgatagcaaaatggcccaaaaatttaagaaactgcctaccagccccagaccttaattttttaaaaaaaatgagtgtaCCCTACCAAAATATAGCAAAATACCACAAATGCTGGAAAACTAAAAAACATGGTTATCAACAACTTATTTCGAAGGATTAGAAAATGACTGCGATGTCCACGTTTTAGGTTTTTCCCTATACTAAAAGTCAGCAAGTGAATTAGCATAACACATGGCGCTCCGTTGGCTGCAACTGCTTGGTAAGCCATGGCGATCCAATTTAAACGGCAATCCAAGGTCAAACCGGAAGTTGGCAGGATCTTACAGGTTGCGTAATCTTAAATGTTCTTTGCTCGatgttagatgttcgatgttagatgttcgatgttagatctttgatgttagatcttctatcttcgatgttagatctcgaTCTTCGAtgttagatcttcgatgttagatcttcgatgttagatcttcgatgttagatctcgatgttagatcttcaatgttagatgttagatcttCgatgttagatctttgatgttagatctttgatgtttgatcttcgatgttagatcttcgatcttcgatgttagatcttCGATCTTCGATCATAGATCTTCGatcttcgatgttagatcttcgatcttcgatgttagatcttcgatcttcgatgttagatcttcgatcttcgatgttagatcttcgatgttcgatgttCGATGTTGCAGATGATATTGCAAAGCAACTTCGAGACACAAGTCAATTACATCTTTCGCCCTCTACTATTTACCTTCTATTCATGTGTGGTCTCTTCTCTGCAACTGCCATTCTACATGGATTGGAAGGGACAAATTTAATTCATGGACTTTGGTACTTGCTGTGTTTGCCTTCTGGTTATCTGTTCCTGACAATTTATTCAATTGCAAATTTAACAGATAGATCTTGGGGCACTCGAGAAGCGAAAGCAAATTCAACATCGCCGAACACAGTAGCATGGTATCGTATTGCTTGGGAAAAATTGAAAATATTTTGTGCAATGTGTTGTCAAAGGAAATTCTACGATGATTCTCAAAGATCTGAAATTATTTTGTCTGAAAGTGATTTGGTATCTGAAAGTTGTGATTTAGCATCGGATGATGGCTTACGTGGCACGTCATCTCCAGACATACGAAATTCAGAGAGTGAAGATGAACTTGGTGAAAGAGAAAAGCCCCCACGACCCCCAAAGCCGCCTAAAATTCCATCCAAACTATTACGACTGCATTCTACTGCTCTAAATCCAAACGACAGGATGATGTCTATGAAAAGGAATCCTCATAAAGTTACTATTGGTCCCGGCATTCGATTCAAATCATTTAAAACACATCTGCCACGAGCAGGGAGTGATAAAGCACAAGAAGATGAAAGAATTAATACTGCTGTTCCGATTGAAGATTTTTTGCATGGAAAATATAAAGACTATGTGGAAAACTTCAAAGATAATGGATATGATGATACTACTTTTTTGCTGAGCATGAAAGAACAGGAATTATTGGATATTGGTTTAATCAATCGAGGACATCGAAAGAAGATTTTGGTTGAAATTGAAAAACTTCCACCTGAAGAAATGGATCAAGAAGTTCCTGATAACGTACCGCAAACAAACATCCGCAAAGCTCGAATCGAATTGGATAAAGCATCCGTCATGGCACAAGAATATACAGAATGCAAATTTTGGGAAAGATTGCGTGTCATTTGTTTACTTCCGGAGCAAGCTGCATTTAGTCAAAGTGATGAGTTGAGAGATAAATTGGAAGAGTTGCGTAATTCTGGTCTGATGATGTTGATTGTGGTCAATATTCTTTGGATCACAATCATGTTGACCATCATTGCTCAAGGCAAAAAGTTACAAGTGCTCAACACCAATTTCCTTGGCCTCGCATTCCTATTTCTTTACACCGTGGTTCTGTTGGTACAATTTTGCACTCTCTTGTGGCACAGAGTTGCCACATGGATTCATTTGATGTCACGTACGCCATTCAAACCTGGTTCAAAGATAAACATGAGTTGGTCGTTCCATGACGATGATTTGCCACCAGAACCAAAAGAAGATGATTTGTTTGTAGCTCAACAAAGACTGAACAGTCGATTAGAGCGTAGATCAAGAAGACGTATGGGCCATATTGCCGATTCTACAATGACATTTCGCTCTATCTACCCTCCGAAGCAAAGTCCTCCATTCTCTATTGAACTGAACTGAAAAGTACTTTAATTTAATTGTTGAATGAAATTTATTTTCACTGTATATAGACTAGTTGTATTTATTAGCAGCAAGATGAACAATGAAGGCTGCTTCGCACG

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07647 all species →	SAM_2	SAM domain (Sterile alpha motif)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001660 all species →	Domain	Sterile alpha motif domain	Interproscan
IPR004835 all species →	Family	Chitin synthase	Interproscan
IPR013761 all species →	Homologous_superfamily	Sterile alpha motif/pointed domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22914 all species →	CHITIN SYNTHASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0004100 all species →	Molecular Function	chitin synthase activity	Interproscan
GO:0006038 all species →	Biological Process	obsolete cell wall chitin biosynthetic process	Interproscan
GO:0016758 all species →	Molecular Function	hexosyltransferase activity	Interproscan
GO:0030428 all species →	Cellular Component	cell septum	Interproscan
GO:0071944 all species →	Cellular Component	cell periphery	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for scaffold454.g4.t2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.