Gene detail

Detailed information of scaffold46.g28.t1 in Aurelia aurita complex sp. Pacific

Genomic Location: scaffold46:298034...310174
NR annotation: no NCBI-NR hit recorded
Species Aurelia aurita complex sp. Pacific · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

scaffold46.g28.t1

tgttttgtggcggctgcttcgacgttttggaagagatgaaatttactgaaagaagaaatggaaattttacattaatagtttacctgattggcgtgtgcattgctgccagatgtgctgcggaaacccaaattaatttgctatcacttgacagtaccggaaagaaactgaccattgtcaacggtgtcgtgaatgtcgaacctaaggtcacaattaagctccgggtatccgggtttaacttgagcaaatctgacacccgtatttcgtttgcaagtaaagctgcaaagagaggagttctatgcgaagatttgaggataacaccggttcaagcattcgatgaagtctcaaaaaatggagctgtcggattgcttactctgaaatggcagagtcatggcacatattatatttgcgtcaagtccgggaacgagccaaattccacaacgcaaacaaaatgggtgcatcaaggggaccacaaatggctgaccatcaaagttgtagacacactgttcatccctcttgcgttgagaatatgccttgtggttctcctgattgcactttcaggactattttcaggtctgaaccttggcttgatgtcacttgaacctaatgatttaaaaattgtcatgaattctggagaggagaatgagagaaaatatgccgagacaatcttgcctgttaggaaaagaggaaactttttgttgtgtaccctacttttagggaatacccttgtgaattcatcatttacgatattgctagatgacctaacaagtggtattgttgctgttattgggtcaactgcggctattgttatatttggggaaattgtccctcagagtatatgctcgcgttatggtttagcagttggtgcgaggactattttgctcactaaaatgttcatgattttaacattttgcctttcatacccaataagcaaacttcttgacttaattcttggagaggaaataagtgctgtttataacaagaggcaactgcttgaaatgctcaaacttcaagatgaatacaatgatcttgaaaaagatgaagttggaattatttctggtgctttgaaatacaaatcaaaaggggttcaagacataatgacaccaattaatgactgcttcttgctcgatgaagatgcaattcttgattttaaaactatgacacaagtcatcaaatctggatacagcagaattccagtatattctggagaaaggtcaaatgttgttgctttgctgtatgtgaaagatctcgcgtttgttgacccagatgattgcattcctctcttgagtgtcatcaagttttataatcatcaagtcagaaaagtcttctatgatacaaggctggatgagatgttagaatggttcaagaaaggaacatcccatttggccgttgtaatcagagtagatgatgacagagatggtgaccctgtgtatgaagcaatgggaattgtaacgctggaagatatcattgaagaaattatccaatcagagattgttgatgaaacagatgtatacattgataacgtctctggaaaaagagttcctggcagaaaaggagtaaatcacgatttctcattgtttactgcatctgatgaagacaagaagaagagaatctcaccacagttggcgtttgcactcttccaatatcttagtacaggtgtggaaccatttaaagaagagtacataacgaggtcagttttgaagaagctcattgaccaccaaggtgcagtggaacgaaaatcaatgaaccctgacaacgaggaggaactctatctttacaagaaaggtgcaagcgctgattgcttcatttgcataatacagggtcaagtcgaggttatagtcggcaatgagtgcctcgttttcgtggacgggcctttcaccgtgtttggaatgcaggctttgtttgcggagaaaggccatgctttcctgccagactatgacgtcaagatgctatccgatttgcagtatctaaagataagccgtgctttatatcgatctgcgataagagcgagtcaactagagaagagtgaacgcaccccttcacatatggaggaactggatgaaatattctggaacaacagcagcaacaaagcgaaagaatcaaccgtcacgtttgacatcaaaacggatgaaaccggattattgttgattccaaatacggaacgtagaccaaggactagtgaagatcaaaaagaggttgatatggtaagcccggtttaatgtaggccaacaaataagtattgcattgtaatggtaggaatggatgtgttccatattgacctaggctggtttgcattgtggcattagtgtgcacatattttttatacgaaactatgaatttgagccagaactgaaagttccttaaaattatcagattttgagttctcataaaagtttacaagtttcttataggttctataacaatcatcctgttcttgttggggagatgagatacggtttgttctagggaacttatgtgtccccccgtgcagtaggttaatgctcatgcgcccatcagagttccagcccaaaacgctgctgcacatgagcattaacctactgcacggggggacacatacgtttcttaacaagttcactacctgtgacctcgtgaacatttcaaaacataggtttttttgttgtttcaaagcggcagtgttttcttttcaatgatagaattcatggaaggatttgaaaaaggaaaaaatcatacaaccttccagatatctttcttctagcttgcgatttttctaattctgataacgtcacagcttcaaatatgatattcgaaaataagtaatatcagaaattttgtgccagaattactgcaaaccttaaaagggcagggtcacgtaaagtaaacaaacttcttttcaagcgacgatttggcagttgttttgataggccttatcacacagattttccattatttttctcaaaatgaaagtgttatttagaagatagactcatgaatttcgtagagaatcaaacgaaacactcctatgttctaagattgcagagatattggtggatttttagaggtaactttattgtggattcaccccatccaccaaaatttgtgcagaacacaatggtcacgtgtgggcaacaataaaaattatagagataacaggtttgtttacggtgaccgtttcaagccaatcaattcaagcaaagaggtaatatagttttgcactgttttttaaaaatttgcactgcacgtgtatataaatttgacttctactcaaaaaaattgtcaagaagacatgagaagcaaaacaaacagagccttggtcgatattggcaaatttgtgtatgtgcagaaatggcattttgattggtttatagtagtttgagtagaatattttcactttgaaatatatagccatagttttattgcattgattgaattatatcactggatcgtatcggatgattaaaaaaaatagtcctcgctggaagagccaatgctccctgtatattaacgcaatattactggcaagtaatttattcagcagtggacattttagaataaattttaagatttacctgactcaaatcggctactctgttctgaaatcatgagcgtttttctcaagaaagtctcttcaaggaacctttaaaacaggcctaaagtctcgattaatgttgttgtcctacagcaatgaatttacatgttatttcttttcgaggaagaaagtggcatccatggaagtgcaagaacattgttccgagtgatttctttctcccaagaggataacaggtgctaaaacgtgtcgaagtcatagctgtaaggcagaaatattgggaatacttggtcgtgattttaggcctgtcgtgaaggctctttaaagggtcctatcgcgagggtcctcctctcgtgaaaatccttcttaatttcataataaattggctgatttgagtcggatgaactttaaaatggatttgaccatatccaccattaaagaggctccgtcgtcaaaatgtaaacaaaacgatgatttttgc

Transcript

scaffold46.g28.t1

TGTTTTGTGGCGGCTGCTTCGACGTTTTGGAAGAGATGAAATTTACTGAAAGAAGAAATGGAAATTTTACATTAATAGTTTACCTGATTGGCGTGTGCATTGCTGCCAGATGTGCTGCGGAAACCCAAATTAATTTGCTATCACTTGACAGTACCGGAAAGAAACTGACCATTGTCAACGGTGTCGTGAATGTCGAACCTAAGGTCACAATTAAGCTCCGGGTATCCGGGTTTAACTTGAGCAAATCTGACACCCGTATTTCGTTTGCAAGTAAAGCTGCAAAGAGAGGAGTTCTATGCGAAGATTTGAGGATAACACCGGTTCAAGCATTCGATGAAGTCTCAAAAAATGGAGCTGTCGGATTGCTTACTCTGAAATGGCAGAGTCATGGCACATATTATATTTGCGTCAAGTCCGGGAACGAGCCAAATTCCACAACGCAAACAAAATGGGTGCATCAAGGGGACCACAAATGGCTGACCATCAAAGTTGTAGACACACTGTTCATCCCTCTTGCGTTGAGAATATGCCTTGTGGTTCTCCTGATTGCACTTTCAGGACTATTTTCAGGTCTGAACCTTGGCTTGATGTCACTTGAACCTAATGATTTAAAAATTGTCATGAATTCTGGAGAGGAGAATGAGAGAAAATATGCCGAGACAATCTTGCCTGTTAGGAAAAGAGGAAACTTTTTGTTGTGTACCCTACTTTTAGGGAATACCCTTGTGAATTCATCATTTACGATATTGCTAGATGACCTAACAAGTGGTATTGTTGCTGTTATTGGGTCAACTGCGGCTATTGTTATATTTGGGGAAATTGTCCCTCAGAGTATATGCTCGCGTTATGGTTTAGCAGTTGGTGCGAGGACTATTTTGCTCACTAAAATGTTCATGATTTTAACATTTTGCCTTTCATACCCAATAAGCAAACTTCTTGACTTAATTCTTGGAGAGGAAATAAGTGCTGTTTATAACAAGAGGCAACTGCTTGAAATGCTCAAACTTCAAGATGAATACAATGATCTTGAAAAAGATGAAGTTGGAATTATTTCTGGTGCTTTGAAATACAAATCAAAAGGGGTTCAAGACATAATGACACCAATTAATGACTGCTTCTTGCTCGATGAAGATGCAATTCTTGATTTTAAAACTATGACACAAGTCATCAAATCTGGATACAGCAGAATTCCAGTATATTCTGGAGAAAGGTCAAATGTTGTTGCTTTGCTGTATGTGAAAGATCTCGCGTTTGTTGACCCAGATGATTGCATTCCTCTCTTGAGTGTCATCAAGTTTTATAATCATCAAGTCAGAAAAGTCTTCTATGATACAAGGCTGGATGAGATGTTAGAATGGTTCAAGAAAGGAACATCCCATTTGGCCGTTGTAATCAGAGTAGATGATGACAGAGATGGTGACCCTGTGTATGAAGCAATGGGAATTGTAACGCTGGAAGATATCATTGAAGAAATTATCCAATCAGAGATTGTTGATGAAACAGATGTATACATTGATAACGTCTCTGGAAAAAGAGTTCCTGGCAGAAAAGGAGTAAATCACGATTTCTCATTGTTTACTGCATCTGATGAAGACAAGAAGAAGAGAATCTCACCACAGTTGGCGTTTGCACTCTTCCAATATCTTAGTACAGGTGTGGAACCATTTAAAGAAGAGTACATAACGAGGTCAGTTTTGAAGAAGCTCATTGACCACCAAGGTGCAGTGGAACGAAAATCAATGAACCCTGACAACGAGGAGGAACTCTATCTTTACAAGAAAGGTGCAAGCGCTGATTGCTTCATTTGCATAATACAGGGTCAAGTCGAGGTTATAGTCGGCAATGAGTGCCTCGTTTTCGTGGACGGGCCTTTCACCGTGTTTGGAATGCAGGCTTTGTTTGCGGAGAAAGGCCATGCTTTCCTGCCAGACTATGACGTCAAGATGCTATCCGATTTGCAGTATCTAAAGATAAGCCGTGCTTTATATCGATCTGCGATAAGAGCGAGTCAACTAGAGAAGAGTGAACGCACCCCTTCACATATGGAGGAACTGGATGAAATATTCTGGAACAACAGCAGCAACAAAGCGAAAGAATCAACCGTCACGTTTGACATCAAAACGGATGAAACCGGATTATTGTTGATTCCAAATACGGAACGTAGACCAAGGACTAGTGAAGATCAAAAAGAGGTTGATATGGTAAGCCCGGTTTAATGTAGGCCAACAAATAAGTATTGCATTGTAATGGTAGGAATGGATGTGTTCCATATTGACCTAGGCTGGTTTGCATTGTGGCATTAGtgtgcacatattttttatacgaaactatgaatttgagccagaactgaaagttccttaaaattatcagattttgagttctcataaaagtttacaagtttcttataggttctataacaatcatcctgttcttgttggggagatgagatacggtttgttctagggaacttatgtgtccccccgtgcagtaggttaatgctcatgcgcccatcagagttccagcccaaaacgctgctgcacatgagcattaacctactgcacggggggacacatacgtttcttAAcaagttcactacctgtgacctcgtgaacatttcaaaacataggttttttTGTTGTTTCAAAGCGGCAGTGTTTTCTTTTCAATGATAGAATTCATGGAAGGATTTGAAAAAGGAAAAAATCATACAACCTTCCAGATATCTTTCTTCTAGCTTGCGATTTTTCTAATTCTGATAACGTCACAGCTTCAAATATGATATTCGAAAATAAGTAATATCAGAAATTTTGTGCCAGAATTACTGCAAACCttaaaagggcagggtcacgtaaagtaaacaaacttcttttcaagcgacgatttggcagttgttttgataggccttatcacacagattttccattatttttctcaaaatgaaagtgttatttagaagatagactcatgaatttcgtagagaatcaaacgaaacactcctatgttctaagattgcagagatattggtggatttttagaggtaactttattgtggattcaccccatccaccaaaatttgtgcagaacacaatggtcacgtgtgggcaacaataaaaattatagagataacaggtttgtttacggtgacCGtttcaagccaatcaattcaagcaaagaggtaatatagttttgcactgttttttaaaaatttgCACTGCACGTGTATATAAATTTGACTTCTACTCAAAAAAATTGTCAAGAAGACATGAGAAGCAAAACAAACAGAGCCTTGGTCGATATTGGCAAATTTGTGTATGTGCAGAAATGGCATTTTGATTGGTTTATAGTAGTTTGAGTAGAATATTTTCACTTTGAAATATATAGCCATAGTTTTATTGCATTGATTGAATTATATCACTGGATCGtatcggatgattaaaaaaaatagtcctcgctggaagagccaatgctccctgtatattaacgcaatattactggcaagtaatttattcagcagtggacattttagaataaattttaagatttacctgactcaaatcggctactctgttctgaaatcatgagcgtttttctcaagaaagtctcttcaaggaacctttaaaacaggcctaaagtctcgattaatgttgttgtcctacagcaatgaatttacatgttatttcttttcgaggaagaaagtggcatccatggaagtgcaagaacattgttccgagtgatttctttctcccaagaggataacaggtgctaaaacgtgtcgaagtcatagctgtaaggcagaaatattgggaatacttggtcgtgattttaggcctgtcgtgaaggctctttaaagggtcctatcgcgagggtcctcctctcgtgaaaatccttcttaatttcataataaattggctgatttgagtcggatgaactttaaaatggatttgaccatatccaccattaaagaggctccgtcgtcaaaatgtaaacaaaacgatgatttttgc

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00571 all species →	CBS	CBS domain	Domain	Interproscan
PF01595 all species →	CNNM	Cyclin M transmembrane N-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000644 all species →	Domain	CBS domain	Interproscan
IPR018490 all species →	Homologous_superfamily	Cyclic nucleotide-binding domain superfamily	Interproscan
IPR046342 all species →	Homologous_superfamily	CBS domain superfamily	Interproscan
IPR044751 all species →	Domain	Ion transporter-like, CBS domain	Interproscan
IPR014710 all species →	Homologous_superfamily	RmlC-like jelly roll fold	Interproscan
IPR002550 all species →	Domain	CNNM, transmembrane domain	Interproscan
IPR045095 all species →	Family	Ancient conserved domain protein family	Interproscan
IPR000595 all species →	Domain	Cyclic nucleotide-binding domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12064 all species →	METAL TRANSPORTER CNNM	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0006810 all species →	Biological Process	transport	Interproscan
GO:0010960 all species →	Biological Process	magnesium ion homeostasis	Interproscan
GO:0022857 all species →	Molecular Function	transmembrane transporter activity	Interproscan
GO:0030026 all species →	Biological Process	intracellular manganese ion homeostasis	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for scaffold46.g28.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.