Gene detail

Detailed information of scaffold46.g4.t2 in Aurelia aurita

Genomic Location: scaffold46:31611...60945
NR annotation: no NCBI-NR hit recorded
Species Aurelia aurita · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

scaffold46.g4.t2

ctgaaaacattttagaaacgttacttcttttgtttcatgtactcttcttttttgcagcatctatgtgaacgtatgccgatccctctttgaaaaagacaaactgctgttttcgttcttgctgtgtattggtattctcaaaggaagggatgatgtaaaagaagacgaatggagatttctgttaactggtggtattgcacttgataatgtttacaaaaatccagcttctgattggttaaccaacaaatcatgggctgaaattgtcaggtgttcagaattggaagcatttaaaggattgaaagatgatttcgccgatcaggctggtggatggcaaagattctacaactcatcttccccgcaatctgatcctttgccacaaccttgggaagacaagttgctgccattgcaaaaattggtgatattgagatgtcttcgtcctgataagatcactcctgcagttcaagattttatcgtcgagacgatgggaaaagaatatacagaatcacctccctttgacttgagacgttgttacaacgattcaaattgctgtctccctcttatttttgtattgtccccgggagcggacccaatggctcaactagtcaagttctcagaagatatgggtatgagtggaaacaaatgccagacaatatctcttggtcaaggtcaaggaccgattgcctacaagatgattgaaaaggctattgcaaatggcacctgggttgtgctacaaaactgtcacgtggccgcatcatggcttcctactttggagaaactttgcgaggagctgattgttcctgagaatacacacaaagaattcagattatggttgacgagttatccttcgcctcattttccagtctctgttcttcaaaatggagtaaaaatgacaaatgaaccaccaaaaggagtacgtgccaatctcatgagatcttacctgaatgacccaatctctgatccagtgttcttcaaggcttgcaacaaacaagaggtacgtttttgtatgagtggaaacaaatgccagacaatatctcttggtcaaggtcaaggaccgattgcctacaagatgattgaaaaggctattgcaaatggcacctgggttgtgctacaaaactgtcacgtggcagcatcatggcttcctactttggagaaactttgcgaggagctgattgttcctgagaatacacacaaagaattcagattatggttgacgagttatccttcacctcattttccagtctctgttcttcaaaatggagtaaaaatgacaaatgaaccaccaaaaggagtacgtgccaatctcatgagatcttacctgaatgacccaatctctgatccagtgttcttcaaggcttgcaacaaacaagagagatggaaaaagttgctgtttggtttgtgtttcttccatgctattgtacaagaacgacgccaattcagttcgcttggatggaacattccatatgaatttaatgaatctgatctgcgaatcagtgtcagacagctacagatgttgctcaatgattacgaagatgttccatttgatgccctgagatatctgactggacaatgtaattatggtggaagagtaaccgatgattttgataggagattcattatgagcgtactatcaaatttttattgtccaagcatcgtcttggaacatgaatactccttttcagagagcggagattataaagtcaataatgagggtgattacagcgcgtacttggacaagatcaagaacttaccaaaaaaggctaggccggaggtgtttgggcttcatgaaaatgcagatatcacgaaggatcaaaaagagactcaacaattgtttgatggaatccttttgacattgccaagacagactgatggaggtggtaaatcatcacaagaaatcgtcgaagaactctctgttgatattttatcaaaacttccagcagactttgatgtggagattatccaggaaaaatatccagtcaaatacgaggaatcgatgaacactgtgttgtcccaagaacttataagattcaaccgcttggtagatgtaatcagaacaagtttgctcaatttacagaaggcaacgaagggattagtggttatgtccgcagaactcgaaaatgtgtttggtagcattttagttggaaaagtcccaacaatgtgggcgaatagatcgtatccatcattaaagcctcttgggagttacatcaacgacttggttgcaaggttaaactttttccagaattggatcgataatggatcaccaaatgtctactggttatctggattctacttcactcagtcatttctcacagtgtcgactaagatctatcctttcattcttcaggaaaaatatccagtcaaatacgaggaatcgatgaacactgtgttgtcccaagaacttataagattcaaccgcttggtagatgtgatcagaacaagtttgctcaatttacggaaggcaacgaaaggattagtggttatgtctgcagaactcgaaaatgtgtttggtagcattttagttggaaaagtcccaacaatgtgggcgaatagatcgtatccatcattaaagcctcttgggagttacatcaacgacttggttgcaaggttaaattttttccagaattggatcgataatggatcaccaaatgtctactggttatctggattctacttcactcagtcatttctcacaggaacgttacagaacttctcgcgaagatatcgaattccaatcgacctccttggctttgaatttgaggtaaccgatgcagattcgggaatggagcagagaccggatgatggatcttttgtgaatggtttgtttatggaaggagcaagatgggacaggacgagcagagtgatcaatgagtcgttgccaaaaactctttttgatcctgtaccggtcatttggctgaagccaaaaccacttctggagatttccaaaaattcaacttatgcttgtccagtttacaagacaagtgctcggcgaggcatcctctccacaactggtctctcaaccaattacgtcttgacaatcgatcttccatcagacaaaaaagaagaccattggattcaacgtggtgctgccatgctttgtcaactagataattaatatacacacgaaatacgctcagactgggttaatttaggctgggttattcacttttctttgaaggtgctgtgatgctgtgttgtaatccaccgactttgcagccagaagagtcaggtggtcggggttcaagccccaccaaaacctcttgcgcgtcttgacaaggggttgccgactcgattaaagcttggctacttctgcaatcccagcgcttggcgctaaaaatcgaaactttgcctccacattaaaaaagagttgcatcttctgcgaaattgtagaaatcaatcaattactccaatctcaacaatatttgttcccatgggaataagtttgtttcatgcttgccatcatgggggtgtgaagagcatataaagatttacccttctcatcaattagtattgaaactcggcaatgcgaaccatttggccttttcttagcatttatttttcttaaaaatacaacaaaaattgcatttcttcgagcatatcgttccaagattatctttttgtgtcaatctatggagttaagtggtctctgctgttggtatgcgttagaaaggttaattttctatggaactggaacggtgaacttgaagatcttattgatcaactgttttcagctctttcgtgagaaccttttgcatatttcgtttttcatgtagatatcagtagcaaatcacagcgtgcagatacagcaatgtgcaaaatctaaattaggctttgctcaatcaactactgtttgaatttgtattaataaacacgcagtatttgttcaatgactgttcgaagctgcaaacttgtttggaacacccataggttttgctgaatttaataaatatttgtcttatgatattttaagattgatgattttaaaatattttgtacatctttgggacatcgagtaccacatcgtgtaccacatgcagcatgtgtacctactttttggcatatttaattttgctttcatttttattctgtaaatattcatagcaattcatcaattaaatagatagatttttaattcgaatatcattagcacaattcacaaatgattttaactttgatcttgttatgtagtttaggaaaatgtatctttgggtttgtaattaagcacgtatgtatttttttaatgtacaatgtaaccaataatatttactcatacaagaagaacagctgtaagaaattttattagataaa

Transcript

scaffold46.g4.t2

CTGAAAACATTTTAGAAACGTTACTTCTTTTGTTTCATGTACTCTTCTTTTTTGCAGCATCTATGTGAACGTATGCCGATCCCTCTTTGAAAAAGACAAACTGCTGTTTTCGTTCTTGCTGTGTATTGGTATTCTCAAAGGAAGGGATGATGTAAAAGAAGACGAATGGAGATTTCTGTTAACTGGTGGTATTGCACTTGATAATGTTTACAAAAATCCAGCTTCTGATTGGTTAACCAACAAATCATGGGCTGAAATTGTCAGGTGTTCAGAATTGGAAGCATTTAAAGGATTGAAAGATGATTTCGCCGATCAGgcTGGTGGATGGCAAAGATTCTACAACTCATCTTCCCCGCAATCTGATCCTTTGCCACAACCTTGGGAAGACAAGTTGCTGCCATTGCAAAAATTGGTGATATTGAGATGTCTTCGTCCTGATAAGATCACTCCTGCAGTTCAAGATTTTATCGTCGAGACGATGGGAAAAGAATATACAGAATCACCTCCCTTTGACTTGAGACGTTGTTACAACGATTCAAATTGCTGTCTCCCTCTTATTTTTGTATTGTCCCCGGGAGCGGACCCAATGGCTCAACTAGTCAAGTTCTCAGAAGATATGGGTATGAGTGGAAACAAATGCCAGACAATATCTCTTGGTCAAGGTCAAGGACCGATTGCCTACAAGATGATTGAAAAGGCTATTGCAAATGGCACCTGGGTTGTGCTACAAAACTGTCACGTGGCCGCATCATGGCTTCCTACTTTGGAGAAACTTTGCGAGGAGCTGATTGTTCCTGAGAATACACACAAAGAATTCAGATTATGGTTGACGAGTTATCCTTCGCCTCATTTTCCAGTCTCTGTTCTTCAAAATGGAGTAAAAATGACAAATGAACCACCAAAAGGAGTACGTGCCAATCTCATGAGATCTTACCTGAATGACCCAATCTCTGATCCAGTGTTCTTCAAGGCTTGCAACAAACAAGAGGTACGTTTTTGTATGAGTGGAAACAAATGCCAGACAATATCTCTTGGTCAAGGTCAAGGACCGATTGCCTACAAGATGATTGAAAAGGCTATTGCAAATGGCACCTGGGTTGTGCTACAAAACTGTCACGTGGCAGCATCATGGCTTCCTACTTTGGAGAAACTTTGCGAGGAGCTGATTGTTCCTGAGAATACACACAAAGAATTCAGATTATGGTTGACGAGTTATCCTTCACCTCATTTTCCAGTCTCTGTTCTTCAAAATGGAGTAAAAATGACAAATGAACCACCAAAAGGAGTACGTGCCAATCTCATGAGATCTTACCTGAATGACCCAATCTCTGATCCAGTGTTCTTCAAGGCTTGCAACAAACAAGAGAGATGGAAAAAGTTGCTGTTTGGTTTGTGTTTCTTCCATGCTATTGTACAAGAACGACGCCAATTCAGTTCGCTTGGATGGAACATTCCATATGAATTTAATGAATCTGATCTGCGAATCAGTGTCAGACAGCTACAGATGTTGCTCAATGATTACGAAGATGTTCCATTTGATGCCCTGAGATATCTGACTGGACAATGTAATTATGGTGGAAGAGTAACCGATGATTTTGATAGGAGATTCATTATGAGCGTACTATCAAATTTTTATTGTCCAAGCATCGTCTTGGAACATGAATACTCCTTTTCAGAGAGCGGAGATTATAAAGTCAATAATGAGGGTGATTACAGCGCGTACTTGGACAAGATCAAGAACTTACCAAAAAAGGCTAGGCCGGAGGTGTTTGGGCTTCATGAAAATGCAGATATCACGAAGGATCAAAAAGAGACTCAACAATTGTTTGATGGAATCCTTTTGACATTGCCAAGACAGACTGATGGAGGTGGTAAATCATCACAAGAAATCGTCGAAGAACTCTCTGTTGATATTTTATCAAAACTTCCAGCAGACTTTGATGTGGAGATTATCCAGGAAAAATATCCAGTCAAATACGAGGAATCGATGAACACTGTGTTGTCCCAAGAACTTATAAGATTCAACCGCTTGGTAGATGTAATCAGAACAAGTTTGCTCAATTTACAGAAGGCAACGAAGGGATTAGTGGTTATGTCCGCAGAACTCGAAAATGTGTTTGGTAGCATTTTAGTTGGAAAAGTCCCAACAATGTGGGCGAATAGATCGTATCCATCATTAAAGCCTCTTGGGAGTTACATCAACGACTTGGTTGCAAGGTTAAACTTTTTCCAGAATTGGATCGATAATGGATCACCAAATGTCTACTGGTTATCTGGATTCTACTTCACTCAGTCATTTCTCACAGTGTCGACTAAGATCTATCCTTTCATTCTTCAGGAAAAATATCCAGTCAAATACGAGGAATCGATGAACACTGTGTTGTCCCAAGAACTTATAAGATTCAACCGCTTGGTAGATGTGATCAGAACAAGTTTGCTCAATTTACGGAAGGCAACGAAAGGATTAGTGGTTATGTCTGCAGAACTCGAAAATGTGTTTGGTAGCATTTTAGTTGGAAAAGTCCCAACAATGTGGGCGAATAGATCGTATCCATCATTAAAGCCTCTTGGGAGTTACATCAACGACTTGGTTGCAAGGTTAAATTTTTTCCAGAATTGGATCGATAATGGATCACCAAATGTCTACTGGTTATCTGGATTCTACTTCACTCAGTCATTTCTCACAGGAACGTTACAGAACTTCTCGCGAAGATATCGAATTCCAATCGACCTCCTTGGCTTTGAATTTGAGGTAACCGATGCAGATTCGGGAATGGAGCAGAGACCGGATGATGGATCTTTTGTGAATGGTTTGTTTATGGAAGGAGCAAGATGGGACAGGACGAGCAGAGTGATCAATGAGTCGTTGCCAAAAACTCTTTTTGATCCTGTACCGGTCATTTGGCTGAAGCCAAAACCACTTCTGGAGATTTCCAAAAATTCAACTTATGCTTGTCCAGTTTACAAGACAAGTGCTCGGCGAGGCATCCTCTCCACAACTGGTCTCTCAACCAATTACGTCTTGACAATCGATCTTCCATCAGACAAAAAAGAAGACCATTGGATTCAACGTGGTGCTGCCATGCTTTGTCAACTAGATAATTAATATACACACGAAATACGCTCAGACTGGGTTAATTTAGGCTGGGTTATTCACTTTTCTttgaaggtgctgtgatgctgtgttgtaatccaccgactttgcagccagaagagtcaggtggtcggggttcaagccccaccaaaacctcttgcgcgtcttgacaaggggttgccgactcgattaaagcttggctacttctgcaatcccagcgcttggcgctaaaaatcgaaactttgcctccacattAAAAAAGAGTTGCATCTTCTGCGAAATTGTAGAAATCAATCAATTACTCCAATCTCAACAATATTTGTTCCCATGGGAATaagtttgtttcatgcttgccatcatgggggtgtgaagagcatataaagatttacccttctcatcaattagtattgaaactcggcaatgcgaaccatttggccttttcttagcatttatttttcttaaaaatacaacaaaaattgcatttcttcgagcatatcgttccaagattatctttttgtgtcaatctatggagttaagtggtctctgctgttggtatgcgttagaaaggttaattttctatggaactggaacggtgaacttgaagatcttattgatcaactgttttcagctctttcgtgagaaccttttgcatatttcgtttttcatgtagatatcagtagcaaatcacagcgtgcagatacagcaatgtgcaaaatctaaattaggctttgctcaatcaactactgtttgaatttgtattaataaacacgcagtatttgttcaatgactgttcgaagctgcaaacttgtttggaacacccATAGGTTTTGCTGAATTTAATAAATATTTGTCTTATGATATTTTAAGATTGATGATTTTAAAATATTTTGTACATCTTTGGGACATCGAGTACCACATCGTGTACCACATGCAGCATGTGTACCTACTTTTTGGCATATTTAATTTTGCTTTCATTTTTATTCTGTAAATATTCATAGCAATTCATCAATTAAATAGATAGATTTTTAATTCGAATATCATTAGCACAATTCACAAATGATTTTAACTTTGATCTTGTTATGTAGTTTAGGAAAATGTATCTTTGGGTTTGTAATTAAGCACGTATGTATTTTTTTAATGTACAATGTAACCAATAATATTTACTCATACAAGAAGAACAGCTGTAAGAAATTTTATTAGATAAA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF18199 all species →	Dynein_C	Dynein heavy chain C-terminal domain	Domain	Interproscan
PF18198 all species →	AAA_lid_11	Dynein heavy chain AAA lid domain	Domain	Interproscan
PF03028 all species →	Dynein_heavy	Dynein heavy chain region D6 P-loop domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR041228 all species →	Domain	Dynein heavy chain, C-terminal domain	Interproscan
IPR041658 all species →	Domain	Dynein heavy chain AAA lid domain	Interproscan
IPR042219 all species →	Homologous_superfamily	Dynein heavy chain AAA lid domain superfamily	Interproscan
IPR026983 all species →	Family	Dynein heavy chain	Interproscan
IPR004273 all species →	Domain	Dynein heavy chain region D6 P-loop domain	Interproscan
IPR043160 all species →	Homologous_superfamily	Dynein heavy chain, C-terminal domain, barrel region	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46961 all species →	DYNEIN HEAVY CHAIN 1, AXONEMAL-LIKE PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0007018 all species →	Biological Process	microtubule-based movement	Interproscan
GO:0030286 all species →	Cellular Component	dynein complex	Interproscan
GO:0045505 all species →	Molecular Function	dynein intermediate chain binding	Interproscan
GO:0051959 all species →	Molecular Function	dynein light intermediate chain binding	Interproscan
GO:0008569 all species →	Molecular Function	minus-end-directed microtubule motor activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for scaffold46.g4.t2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.