Gene detail

Detailed information of scaffold47.g8.t1 in Morbakka virulenta

Genomic Location: scaffold47:379217...442465
NR annotation: KAI8510092.1, Fizzy- protein [Branchiostoma belcheri]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

scaffold47.g8.t1

ACGATCTTCTTCAAATTTAAACGAATAGCTTCATCAGTTTTGTTTTCTTGAGGTTACTTGAGCACAATTTTGGAGAGAAAAATGACTGTACGCATGACTAATTTATAACGTTTATAAGAACTTTGGACAGTTACAACTAAATCTCACTGAGGTGTCAACTACAAAATGGATCCAGAATTTGAGAAAAGATTACTAAGACAATTGAACAGGCAAAGCCCCCAAAAAGTGATTTCACCTACATCACCAAGCATTACAAGAAGCCCTGTGGGACTGCGATCTCCTATGAAAGATTCAAAAAGTGACAGATTCATACCATGTCGAACTGCTCTGAACTTTTCAGTTGGAAGTCTCACAGTTCAGGAAAACTCGGATCAGTCAAGCCCTGTCAAAGACCAGAGCAATATTGAAAACAAAGAGAGTGCAGTCTATGGGACTCTGCTAAAAAATGAACTTTTCGGAGCAGATATTGACTCTTACAAGGAGCAATATGATAACAGACAACCCCTTTGTACACCATCTCATGTTAGAAATCTCTTCAAGTACAAAGTACGACGAAAAAGAGATTCTCCGGAAGCTTGTGATTCACACAGTCCTTACTCGTTATCGCCAGTCTGTGACAAAAGCCACAAGCTACTGCGATCACCTCGCAAGGTACTTCGGAAAATATCGAGAGTACCATTTAAGGTCCTTGACGCACCTGATTTACAAGACGATTTTTATTTGAACCTTGTCGACTGGTCATCCTTAAACATCCTCAGCGTTGGCCTTGGTGTGTCTATCTATCTTTGGAGTGCATTTACAAGCCAGGTAACAAAACTATGTGACTTGTCAAGTGAAGAAGATTCGATTACGTCAGTTGCTTGGTCCGACAGAGGGAATCATTTGGCAGTTGGTACCAGCAAAGGCTATGTTCAGATTTGGGACACAGCCTGTAGCAAAAAGATCACAGTCCTTGAAGGCCACTCAGCTCGAGTTGGTTCACTAGCTTGGAATAACGACCTTCTCTGCTCAGGAAGCCGAGATCGAATAATTCTACAGAGAGACACAAGGTTACCAGTTGGCTCGGAGAAAAGGCTGGTTGGCCATCGCCAGGAGGTGTGTGGACTTCGCTGGTCACCAGATGGGCAACTTTTGGCATCAGGAGGGAATGATAACAAGCTTCTCGTGTGGAATTTGTCAAGCACGACACCTTATCAACAATACAGTGACCACACTGCAGCAGTCAAAGCAATTGCCTGGTCACCCCATCAGCATGGACTTCTTGCATCTGGTGGTGGAACAGTGGATCGCTGTATTCGTTTTTGGAATACTTTGACAGCACAGCCCTTACAGTGGGTTGATACAGGATCACAAGTATGTAATATAGCCTGGTCAAAACACTCAAACGAATTAGTTAGTACCCATGGCTACTCACAAAATCAGATACTTGTGTGGAAATATCCGGCACTTCAACAAGTGACAAAACTGACTGGACACACTTTTCGAGTTCTTTATTTGTCAATGTCTCCTGATGGTGAATCCATAGTAACTGGTGCAGGGGACGAAACATTGAGATTTTGGGATGTTTTTAGCAAAGCGCGGGAACATAAGGAATGCCGGTCAGAACTGAATATGTTTGCCCATATACGCTGAGCTTTTACAACAGAAAAACCAAAAGAGAAATTGTGTTTTAATTCCGGACACTGAAGCGAGATAACTTCCGCAAGGCTTTGTGTTTTTTCGTCTGTTGCAATATATTCGTACCAACATTCAAATCTCCAGTAGGAAGGTTTATGAATTGATCATCTCAACGCCACAAATATTAATTACTATTGCTCATTATTTTATTTTTTTAAATTTGAAACAACGGTTAGCGTAACTGATTATAGATTGCATCGTATGGCGATGAGTGGCAGTGATTATATTTGCCCCGCAACAGCTTTATTTGCCAGCTGTTACGTCGCTGTGAAGTACAAATGTTCCCCATGCTGGTTTTGGTGTGCTTTTGATAGTCTTCCGTTATTCGTAGACTGTGGAGTCGTGTAGTTAAGATAAACTCTGCTTTCGTTACCGTTATGGGCCACCCAGTCAGGGGTGGGTAGTCATGCCGCTTTTCGATACTGTTTGTAATACCACTATGACGTGTTGGGGACAGTCGGAAACTAATAGCGCTTCCAATATAGCAGTCACGTCGAGTTTTTAAAGCCACTGTCTTTTTCAAGCAGCGAAGAAGAGGTTGCAGTCCATGTAAACAGGTCACACCCCATGTAAATATTATCCATTGTTTCTTATTAAGAATTAGCGGCTAGGTATTTAGCATTGTTTTCCTGCCCCACATTTTTGGCAGCACTTCAGCTAAATCTAATTTTTTTGCCATTTAAATATATGCTCCGAAAACCAGATATAAGGTACGCAATTTAGCGGAAACAGTTTTTTTGCCCCGTTAATGCTCAACAGAGACTGTAGTTGTTAACCTATCCATATAAATCCCTTAACAGCTGTTTTTCTTGTGTGCTGGGACGTGCAACTGGCACAATATAATAGTAAACCAGTATATTGCAACTGATTCAGATACCAAAACTATTTAAATAAACCAAATACAATATCAGCTGATTTGTAACAATGTATTGTTTACGTCACAATATGGTGTAAATGTGTACTCATCCTATGTCACTTGATTGCAACATGGTTTTTTTTGTAAAATATAACGTCTGGAAAGATTTGTGTCATGTAATTGCGTCATGGATGATTGTTGTACAGCTAACTTAACCCTGATCTTTTTACGATACCGCGTATTTAGCTGTTTATTTGCGCGCTGCAAACACTGACAGCTGTTGTAAATGACAGTCAAGTAATCTTAGGTGAATAGCAGCCATTTGGCTTTAAAATTGTTTGTATTTAACGTCGGACACATAACACATAAATGAAGTAATACCGTCGTA

Protein

Uniprot

Gene family

Uniprot term	Description
Q9R1K5	Fizzy-related protein homolog OS=Mus musculus OX=10090 GN=Fzr1 PE=1 SV=1
Q9UM11	Fizzy-related protein homolog OS=Homo sapiens OX=9606 GN=FZR1 PE=1 SV=2
Q9M7I2	B-type cell cycle switch protein ccs52A OS=Medicago truncatula OX=3880 GN=CCS52A PE=1 SV=1

Gene family	Subfamily
Ubiquitin Family	UBD\|Other\|Beta-prp
Ubiquitin Family	E3\|E3 adaptor Cullin RING\|CDC20

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12894	ANAPC4_WD40	Anaphase-promoting complex subunit 4 WD40 domain	Repeat	Interproscan
PF00400	WD40	WD domain, G-beta repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001680	Repeat	WD40 repeat	Interproscan
IPR019775	Conserved_site	WD40 repeat, conserved site	Interproscan
IPR024977	Domain	Anaphase-promoting complex subunit 4-like, WD40 domain	Interproscan
IPR036322	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR033010	Family	WD repeat Cdc20/Fizzy	Interproscan
IPR015943	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR19918	CELL DIVISION CYCLE 20 CDC20 FIZZY -RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005680	Cellular Component	anaphase-promoting complex	Interproscan
GO:0010997	Molecular Function	anaphase-promoting complex binding	Interproscan
GO:0031145	Biological Process	anaphase-promoting complex-dependent catabolic process	Interproscan
GO:0097027	Molecular Function	ubiquitin-protein transferase activator activity	Interproscan
GO:1904668	Biological Process	positive regulation of ubiquitin protein ligase activity	Interproscan
GO:1905786	Biological Process	positive regulation of anaphase-promoting complex-dependent catabolic process	Interproscan
GO:1990757	Molecular Function	ubiquitin ligase activator activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K03364	CDH1, FZR1; cell division cycle 20-like protein 1, cofactor of APC complex	-	Ubiquitin system	ko04121	deepkoala