Gene detail

Detailed information of scaffold474.g9.t3 in Aurelia aurita complex sp. Pacific

Genomic Location: scaffold474:100407...132284
NR annotation: no NCBI-NR hit recorded
Species Aurelia aurita complex sp. Pacific · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

scaffold474.g9.t3

aatagaaagcctgtgcactagcgtccatttcccaacatatcagtacaacattctcaatgtcacccaaaaccgtttgtgcaaagctttgggaattatgtttcgcggggcaagcacagacacaatggctttgttcctccacagtagctttgttcctccacaatagctagttcccggtctccttgtatccctgtgccctggaaatgtcaacagcagcaacacggatcatagccttcaatgaagaacgttcaaaattgcttttaaaaagcaaatgaccatactatgggtgacaatgactgttttatcaacaattcaaagaaattgtaaaagtttcctggctttagaacgagccctcgtccttcctaggatcatatgtttctagatggggctactgcagcttgttacgagcggtttcttaaaaaagggtatggtttgtagttgtgggcaagacgcagtctcaagatctcttgcaaccagcaaaaattgatcaaacttcacggtgtttttgctccttgggcgttgcatgccaagctgtaacgccattcataaatgactatacgatgactggacactctacgacggcagtcaatgattaggccctttttacgtcattttcagacggaagcttcactttctctctcatctcattcaacgcctttggaaatggtgccgaaaatccttcagcaagaacagttctcgatacgttcaaagtgttgatactcagtgccgtattatctgctgcaaggaaaaaggacgccaaaaagtagcttagattttcaccaccctgcttgcttgccaaagtttggatcgtgaggttatcaagatgtcaaatcgatatttaactttactggtggccgaacattgcattcatatataccttcatccattactttagtacaagagatacgtaatattttcgtctgaacatcgcattatcatataaacctccatatccattacttcagtgcgagagatacgtaatattttcgtctgacactggtcacaccaagaaattacccgtatgagaacgctacaatcttggacaaaatatatccggactatgctatcacaacaattccaattttaacaccccatttcccccctcccccacctatcaatgttggtctgacgtgagattttggtggaaggcgggatctcggtagagttcgagcgagatctcggctagccggggaaatgttttctcatgtgaacgctcgttctatttcatgtgataaagctatatgaggcgagatctcggttgaacgggaatcccgcttcaccgggaaaatgccggggaaactttctccatatgaacaggccctaatagttttgcttgcctctttttgctgcaagcaatttcccgccttcttgcgtcgtccaagacgtaacccgccccagacttctttcggcccctttcattggacccagactcctagatcagcggttcggttggcgcgctcggctcagcttggaatgctgcacatttgattcagaaaagaacagcatcatggcgaaattaattctagaagatggcacaatctttgaaggaaaggcatttggagcgaaagagagttgctctggagaagttgtgttccagactggtatggttggatacccagaatccttgacagatccatcctacaatggccagatcctggttttgacatatccgctcattggaaattatggggtgccagagaaaacaagagacaaagaagggattcttaagaactttgaatcagaaaagatatggacacttggtttggttcttggagatttaactgaagaatacagtcattgggcagcaaagatttctctgtccaaatggcttgaagaggagaaaatcccaggaatctatgggattgataccagagcacttacaaagaagctgagagaaagaggcaccatgcttggaaagatagtcattgataaagacgctgacaaggaaatacctttctctgatccaaacatcagaaatttggttgcagaggtctcctgcaagaaaacatcaacatacaacagaaatggtaaaacgaagatcattgctgttgatatgggaataaagtacaatcagattagatgcttaatggcatgtgacgttcatgtaaaagttgtgccatgggattatgattttgtgccagaactgacaaagaaagacaagagagcttcctcctgcgaagctgcttcatggcttcccaaacattttccacctctggcttcaaaactttggaaagagaatagtaacagtacagaccttgtgcatattcacaacatggtaattgaatgggaaagacccgatggaatacttcttgcgtttggaggacaaactgctctcaactgcgggatagaattagaagaaagtggagtttttgaaaagtacaaagtaatggtccttggcacaccaatacaatcaatcgaatggactgaagacagacagttgtttgctgaaaagatggcagaaattggagaacatgtagcaccaagtgaagcagcttattctgttgatcaggctctggctgctgcttcaagactggaatacccagtcatgcttcgctctgcattttctcttggtggcctcggatctggtttcgcttcagacgaggctgaattgcgtagcctagcaacagctgctttcgctcacacaaagcaagtcctgattgataaatcattgaaaggatggaaagaggttgaatacgaggttgtcagagatagttatgacaattgcatcacagtttgcaacatggaaaacgtcgatccccttggtatccacactggcgaatcaatcgttgttgcaccaagtcaaacactgacgaacaaagaatacaacttgttacgaacagtggcaattaaagtcattcggcatcttggtgttattggagaatgtaatattcaatatgcgctcaatccagaatcagaggagtattacattatcgaagtcaacgctcgtttatcaagaagttcagctcttgcatcaaaagccactggttatccccttgcttatattgcggctaaactggccttaggcaaacctttaccggaactaaagaactctgttaccggctcaacaaccgcatgctttgaaccgagtttggattatatcgttgtcaaagtaccgagatgggatcttagtaaatttagcagagtcagcacgaagattggaagttcaatgaaaagtattggagaagtaatggcaattggaagatgttttgaagaagcgattcaaaaagccctgagaatggtggatgagaaatatcttggatttgtctcacttgggttggatccttgcgacaaagagcttcatgaaccatcagacagaagaatcatatttttatgcgctgcactaaaagcagaatacacgatcgacaggctttatgagttgacaaaaatcgatcgttggtttttgtacaaattcaagaaaatcatcaaattcgctgccatgcttgaaaaggagttttgccaggatcctggaacagcaacgctcatcccaaaagatgttttactgactgcaaaacaaattggtttctctgacaaacaaattgctaagcatgtacaaagcacgaacttggcaatccgagcattacgagaagaacttggtgtcactccacatgtgaaacaaatcgataccgtggctgcagaattccctgccagtgctaattatttatacttgacatacaatgcttgtgaagatgatatcacatttgatgatactggtgtcatggtcctcgggtctggtgtatacagaattggaagtagcgttgaattcgattcatgtgcagttgggtgtatcagagaactgagaaagctgggaagaaaaacagtgatggtaaactgtaatccagaaaccgtcagcacagattatgacgaatgtgatcgactgtatttcgatgaaatctcttttgagacggtgatggacatatacacaaaagaagatcctgaaggagtgatcttatcaatgggtggacaaatcccaaacaatattgcaatggctttgcatcgtcagcaagtgagggtgcttggtacatctccagaaatgatcgataatgctgagaatcgattcaagttttcaagaatgcttgacggaattggggtattgcaacccgtttggaaagaactcaccactattgaggaggcctttgccttctgtcagaaggtcggttacccatgccttattcggccatcttatgtcctgagtggtgccgcaatgaatgtagcctacactgatgttgatttgagatcctatctgggatctgcagtatccgttggcaaggatcatcctgtcgtcatttccaagttcattcaagatgccaaggagatagatatagatgcagttgctgcaggtggtgaagtgttaagcattgcggtatccgagcacgtggaattagcaggagtgcattcaggagatgccacccttgtttgcccaccaagacatatcaatgaagaaactctcgctaaactcaagcaagtttctgttctcattgctgatgctttgaatatctcgggaccgttcaatatgcaactaattgccaaggacaaccagctgaaagtcattgaatgcaatcttcgagcatcaagatctctacccttcgtatcaaaaaccttgaaccatgacttcattgcaatggcaacaagggtaatggttgggggccatgttgaaccagcattcgatgtcatggacaaatgtgaaagagttggcgtcaaagttccacaattttcattctctcgattggctggcgctgattttatgcttggtgtagagatggcaagtactggcgaagttgcatgttttggggaagatcaatacgaggcttatataaaagcccttctcagcaccggattcaagattcccaagaaaaccatacttttgaccgttggcagttacaagtccaaaatggaactactaccttacgttcaaatgctgcagaaatttggttatgaactatatgcaagtatgggaactggtgatttctacagctcacatggtgtcaaggtatctgcctcctcctctttcttctcccattttatcgatattatgcttctgtgtaccaaatatgcggttattaaacgattacgaggtccatgctggaaaatatttagaccgcagtttgacgtacggaccgaacgcagtgaggtccgtacaatgaactaaggtccaaatattttccagcatggatcgagtaatcgtttaataagggctttattatatggcagaaccttttgagaacgttgtttatagtatcgtacttttctgttgtgtctttgatcctgtgcatcactgcagttgctcgttgcaacgttaactaaattggcattttcttcgtgtataattgcaagttcgtcttcaaagtttacagaaaagaaatcttcgatgaataagctaaactttggctgacacttcttacggcctaagcctacacaagaagctcctcccttgttgttgatttttaaggcaacgcccggtccaatacggcttcgaacgaaaaatacggcttttacggaccgatcaagaaccaatcgaattgctgcgttgctggtccgaggagccgtattttcgaacgccatataataaactcttttcctgaag

Transcript

scaffold474.g9.t3

AATAGAAAGCCTGTGCACTAGCGTCCATTTCCCAACATATCAGTACAACATTCTCAATGTCACCCAAAACCGTTTGTGCAAAGCTTTGGGAATTATGTTTCGCGGGGCAAGCACAGACACAATGGCTTTGTTCCTCCACAGTAGCTTTGTTCCTCCACAATAGCTAGTTCCCGGTCTCCTTGTATCCCTGTGCCCTGGAAATGTCAACAGCAGCAACACGGATCATAGCCTTCAATGAAGAACGTTCAAAATTGCTTTTAAAAAGCAAATGACCATACTATGGGTGACAATGACTGTTTTATCAACAATTCAAAGAAATTGTAAAAGTTTCCTGGCTTTAGAACGAGCCCTCGTCCTTCCTAGGATCATATGTTTCTAGATGGGGCTACTGCAGCTTGTTACGAGCGGTTTCTTAAAAAAGGGTATGGTTTGTAGTTGTGGGCAAGACGCAGTCTCAAGATCTCTTGCAACCAGCAAAAATTGATCAAACTTCACGGTGTTTTTGCTCCTTGGGCGTTGCATGCCAAGCTGTAACGCCATTCATAAATGACTATACGATGACTGGACACTCTACGACGGCAGTCAATGATTAGGCCCTTTTTACGTCATTTTCAGACGGAAGCTTCACTTTCTCTCTCATCTCATTCAACGCCTTTGGAAATGGTGCCGAAAATCCTTCAGCAAGAACAGTTCTCGATACGTTCAAAGTGTTGATACTCAGTGCCGTATTATCTGCTGCAAGGAAAAAGGACGCCAAAAAGTAGCTTAGATTTTCACCACCCTGCTTGCTTGCCAAAGTTTGGATCGTGAGGTTATCAAGATGTCAAATCGATATTTAACTTTACTGGTGGCCGAACATTGCATTCATATATACCTTCATCCATTACTTTAGTACAAGAGATACGTAATATTTTCGTCTGAACATCGCATTATCATATAAACCTCCATATCCATTACTTCAGTGCGAGAGATACGTAATATTTTCGTCTGACACTGGTCACACCAAGAAATTACCCGTATGAGAACGctacaatcttggacaaaatatatccggactatgctatcacaacaattccaattttaacaccccatttcccccctcccccacctatcaatgttggtctgacgtgagattttggtggaaggcgggatctcggtagagttcgagcgagatctcggctagccggggaaatgttttctcatgtgaacgctcgttctatttcatgtgataaagctatatgaggcgagatctcggttgaacgggaatcccgcttcaccgggaaaatgccggggaaactttctccatatgaacaggccctAATAGTTTTGCTTGCCTCTTTTTGCTGCAAGCAATTTCCCGCCTTCTTGCGTCGTCCAAGACGTAACCCGCCCCAGACTTCTTTCGGCCCCTTTCATTGGACCCAGACTCCTAGATCAGCGGTTCGGTTGGCGCGCTCGGCTCAGCTTGGAATGCTGCACATTTGATTCAGAAAAGAACAGCATCATGGCGAAATTAATTCTAGAAGATGGCACAATCTTTGAAGGAAAGGCATTTGGAGCGAAAGAGAGTTGCTCTGGAGAAGTTGTGTTCCAGACTGGTATGGTTGGATACCCAGAATCCTTGACAGATCCATCCTACAATGGCCAGATCCTGGTTTTGACATATCCGCTCATTGGAAATTATGGGGTGCCAGAGAAAACAAGAGACAAAGAAGGGATTCTTAAGAACTTTGAATCAGAAAAGATATGGACACTTGGTTTGGTTCTTGGAGATTTAACTGAAGAATACAGTCATTGGGCAGCAAAGATTTCTCTGTCCAAATGGCTTGAAGAGGAGAAAATCCCAGGAATCTATGGGATTGATACCAGAGCACTTACAAAGAAGCTGAGAGAAAGAGGCACCATGCTTGGAAAGATAGTCATTGATAAAGACGCTGACAAGGAAATACCTTTCTCTGATCCAAACATCAGAAATTTGGTTGCAGAGGTCTCCTGCAAGAAAACATCAACATACAACAGAAATGGTAAAACGAAGATCATTGCTGTTGATATGGGAATAAAGTACAATCAGATTAGATGCTTAATGGCATGTGACGTTCATGTAAAAGTTGTGCCATGGGATTATGATTTTGTGCCAGAACTGACAAAGAAAGACAAGAGAGCTTCCTCCTGCGAAGCTGCTTCATGGCTTCCCAAACATTTTCCACCTCTGGCTTCAAAACTTTGGAAAGAGAATAGTAACAGTACAGACCTTGTGCATATTCACAACATGGTAATTGAATGGGAAAGACCCGATGGAATACTTCTTGCGTTTGGAGGACAAACTGCTCTCAACTGCGGGATAGAATTAGAAGAAAGTGGAGTTTTTGAAAAGTACAAAGTAATGGTCCTTGGCACACCAATACAATCAATCGAATGGACTGAAGACAGACAGTTGTTTGCTGAAAAGATGGCAGAAATTGGAGAACATGTAGCACCAAGTGAAGCAGCTTATTCTGTTGATCAGGCTCTGGCTGCTGCTTCAAGACTGGAATACCCAGTCATGCTTCGCTCTGCATTTTCTCTTGGTGGCCTCGGATCTGGTTTCGCTTCAGACGAGGCTGAATTGCGTAGCCTAGCAACAGCTGCTTTCGCTCACACAAAGCAAGTCCTGATTGATAAATCATTGAAAGGATGGAAAGAGGTTGAATACGAGGTTGTCAGAGATAGTTATGACAATTGCATCACAGTTTGCAACATGGAAAACGTCGATCCCCTTGGTATCCACACTGGCGAATCAATCGTTGTTGCACCAAGTCAAACACTGACGAACAAAGAATACAACTTGTTACGAACAGTGGCAATTAAAGTCATTCGGCATCTTGGTGTTATTGGAGAATGTAATATTCAATATGCGCTCAATCCAGAATCAGAGGAGTATTACATTATCGAAGTCAACGCTCGTTTATCAAGAAGTTCAGCTCTTGCATCAAAAGCCACTGGTTATCCCCTTGCTTATATTGCGGCTAAACTGGCCTTAGGCAAACCTTTACCGGAACTAAAGAACTCTGTTACCGGCTCAACAACCGCATGCTTTGAACCGAGTTTGGATTATATCGTTGTCAAAGTACCGAGATGGGATCTTAGTAAATTTAGCAGAGTCAGCACGAAGATTGGAAGTTCAATGAAAAGTATTGGAGAAGTAATGGCAATTGGAAGATGTTTTGAAGAAGCGATTCAAAAAGCCCTGAGAATGGTGGATGAGAAATATCTTGGATTTGTCTCACTTGGGTTGGATCCTTGCGACAAAGAGCTTCATGAACCATCAGACAGAAGAATCATATTTTTATGCGCTGCACTAAAAGCAGAATACACGATCGACAGGCTTTATGAGTTGACAAAAATCGATCGTTGGTTTTTGTACAAATTCAAGAAAATCATCAAATTCGCTGCCATGCTTGAAAAGGAGTTTTGCCAGGATCCTGGAACAGCAACGCTCATCCCAAAAGATGTTTTACTGACTGCAAAACAAATTGGTTTCTCTGACAAACAAATTGCTAAGCATGTACAAAGCACGAACTTGGCAATCCGAGCATTACGAGAAGAACTTGGTGTCACTCCACATGTGAAACAAATCGATACCGTGGCTGCAGAATTCCCTGCCAGTGCTAATTATTTATACTTGACATACAATGCTTGTGAAGATGATATCACATTTGATGATACTGGTGTCATGGTCCTCGGGTCTGGTGTATACAGAATTGGAAGTAGCGTTGAATTCGATTCATGTGCAGTTGGGTGTATCAGAGAACTGAGAAAGCTGGGAAGAAAAACAGTGATGGTAAACTGTAATCCAGAAACCGTCAGCACAGATTATGACGAATGTGATCGACTGTATTTCGATGAAATCTCTTTTGAGACGGTGATGGACATATACACAAAAGAAGATCCTGAAGGAGTGATCTTATCAATGGGTGGACAAATCCCAAACAATATTGCAATGGCTTTGCATCGTCAGCAAGTGAGGGTGCTTGGTACATCTCCAGAAATGATCGATAATGCTGAGAATCGATTCAAGTTTTCAAGAATGCTTGACGGAATTGGGGTATTGCAACCCGTTTGGAAAGAACTCACCACTATTGAGGAGGCCTTTGCCTTCTGTCAGAAGGTCGGTTACCCATGCCTTATTCGGCCATCTTATGTCCTGAGTGGTGCCGCAATGAATGTAGCCTACACTGATGTTGATTTGAGATCCTATCTGGGATCTGCAGTATCCGTTGGCAAGGATCATCCTGTCGTCATTTCCAAGTTCATTCAAGATGCCAAGGAGATAGATATAGATGCAGTTGCTGCAGGTGGTGAAGTGTTAAGCATTGCGGTATCCGAGCACGTGGAATTAGCAGGAGTGCATTCAGGAGATGCCACCCTTGTTTGCCCACCAAGACATATCAATGAAGAAACTCTCGCTAAACTCAAGCAAGTTTCTGTTCTCATTGCTGATGCTTTGAATATCTCGGGACCGTTCAATATGCAACTAATTGCCAAGGACAACCAGCTGAAAGTCATTGAATGCAATCTTCGAGCATCAAGATCTCTACCCTTCGTATCAAAAACCTTGAACCATGACTTCATTGCAATGGCAACAAGGGTAATGGTTGGGGGCCATGTTGAACCAGCATTCGATGTCATGGACAAATGTGAAAGAGTTGGCGTCAAAGTTCCACAATTTTCATTCTCTCGATTGGCTGGCGCTGATTTTATGCTTGGTGTAGAGATGGCAAGTACTGGCGAAGTTGCATGTTTTGGGGAAGATCAATACGAGGCTTATATAAAAGCCCTTCTCAGCACCGGATTCAAGATTCCCAAGAAAACCATACTTTTGACCGTTGGCAGTTACAAGTCCAAAATGGAACTACTACCTTACGTTCAAATGCTGCAGAAATTTGGTTATGAACTATATGCAAGTATGGGAACTGGTGATTTCTACAGCTCACATGGTGTCAAGGTATCTGCCTCCTCCTCTTTCTTCTCCCATTTTATCGATATTATGCTTCTGTGTACCAAAtatgcggttattaaacgattacgaggtccatgctggaaaatatttagaccgcagtttgacgtacggaccgaacgcagtgaggtccgtacaatgaactaaggtccaaatattttccagcatggatcgagtaatcgtttaataagggctttattatatggcagaaccttttgagaacgttgtttatagtatcgtacttttctgttgtgtctttgatcctgtgcatcactgcagttgctcgttgcaacgttaactaaattggcattttcttcgtgtataattgcaagttcgtcttcaaagtttacagaaaagaaatcttcgatgaataagctaaactttggctgacacttcttacggcctaagcctacacaagaagctcctcccttgttgttgatttttaaggcaacgcccggtccaatacggcttcgaacgaaaaatacggcttttacggaccgatcaagaaccaatcgaattgctgcgttgctggtccgaggagccgtattttcgaacgccatataataaaCTCTTTTCCTGAAG

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02786 all species →	CPSase_L_D2	Carbamoyl-phosphate synthase L chain, ATP binding domain	Domain	Interproscan
PF02787 all species →	CPSase_L_D3	Carbamoyl-phosphate synthetase large chain, oligomerisation domain	Domain	Interproscan
PF00988 all species →	CPSase_sm_chain	Carbamoyl-phosphate synthase small chain, CPSase domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036897 all species →	Homologous_superfamily	Carbamoyl-phosphate synthetase, large subunit oligomerisation domain superfamily	Interproscan
IPR036480 all species →	Homologous_superfamily	Carbamoyl-phosphate synthase small subunit, N-terminal domain superfamily	Interproscan
IPR011761 all species →	Domain	ATP-grasp fold	Interproscan
IPR013815 all species →	Homologous_superfamily	ATP-grasp fold, subdomain 1	Interproscan
IPR005480 all species →	Domain	Carbamoyl-phosphate synthetase, large subunit oligomerisation domain	Interproscan
IPR005483 all species →	Domain	Carbamoyl-phosphate synthase large subunit, CPSase domain	Interproscan
IPR011607 all species →	Domain	Methylglyoxal synthase-like domain	Interproscan
IPR006275 all species →	Family	Carbamoyl-phosphate synthase, large subunit	Interproscan
IPR005479 all species →	Domain	Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain	Interproscan
IPR036914 all species →	Homologous_superfamily	Methylglyoxal synthase-like domain superfamily	Interproscan
IPR016185 all species →	Homologous_superfamily	Pre-ATP-grasp domain superfamily	Interproscan
IPR002474 all species →	Domain	Carbamoyl-phosphate synthase small subunit, N-terminal domain	Interproscan
IPR029062 all species →	Homologous_superfamily	Class I glutamine amidotransferase-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11405 all species →	CARBAMOYLTRANSFERASE FAMILY MEMBER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0046872 all species →	Molecular Function	metal ion binding	Interproscan
GO:0006807 all species →	Biological Process	obsolete nitrogen compound metabolic process	Interproscan
GO:0004070 all species →	Molecular Function	aspartate carbamoyltransferase activity	Interproscan
GO:0004088 all species →	Molecular Function	carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity	Interproscan
GO:0004151 all species →	Molecular Function	dihydroorotase activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0006207 all species →	Biological Process	'de novo' pyrimidine nucleobase biosynthetic process	Interproscan
GO:0006228 all species →	Biological Process	UTP biosynthetic process	Interproscan
GO:0006541 all species →	Biological Process	glutamine metabolic process	Interproscan
GO:0019240 all species →	Biological Process	citrulline biosynthetic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01948	CPS1; carbamoyl-phosphate synthase (ammonia)	EC:6.3.4.16	Peptidases and inhibitors	ko01002	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.