Gene detail

Detailed information of scaffold488.g4.t1 in Morbakka virulenta

Genomic Location: scaffold488:359216...384082
NR annotation: XP_046162878.1, S-phase kinase-associated protein 1-like [Oncorhynchus gorbuscha]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

Protein

Uniprot

Gene family

Uniprot term	Description
Q9WTX5	S-phase kinase-associated protein 1 OS=Mus musculus OX=10090 GN=Skp1 PE=1 SV=3
Q6PEC4	S-phase kinase-associated protein 1 OS=Rattus norvegicus OX=10116 GN=Skp1 PE=1 SV=3
Q3ZCF3	S-phase kinase-associated protein 1 OS=Bos taurus OX=9913 GN=SKP1 PE=1 SV=1

Gene family	Subfamily
Ubiquitin Family	E3\|E3 adaptor Cullin RING\|SKP1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03931	Skp1_POZ	Skp1 family, tetramerisation domain	Domain	Interproscan
PF01466	Skp1	Skp1 family, dimerisation domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR016897	Family	S-phase kinase-associated protein 1	Interproscan
IPR016073	Domain	SKP1 component, POZ domain	Interproscan
IPR001232	Family	S-phase kinase-associated protein 1-like	Interproscan
IPR011333	Homologous_superfamily	SKP1/BTB/POZ domain superfamily	Interproscan
IPR036296	Homologous_superfamily	SKP1-like, dimerisation domain superfamily	Interproscan
IPR016072	Domain	SKP1 component, dimerisation	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11165	SKP1	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0006511	Biological Process	ubiquitin-dependent protein catabolic process	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0031146	Biological Process	SCF-dependent proteasomal ubiquitin-dependent protein catabolic process	Interproscan
GO:0097602	Molecular Function	cullin family protein binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K03094	SKP1, CBF3D; S-phase kinase-associated protein 1	-	Chromosome and associated proteins	ko03036	deepkoala