Gene detail

Detailed information of scaffold49.g3.t2 in Aurelia aurita

Genomic Location: scaffold49:46277...65015
NR annotation: no NCBI-NR hit recorded
Species abbreviation AAURI1 · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

scaffold49.g3.t2

gctttttaaatgaatcaactacatttattggctgaagttgattagtgcccaaatgcagaaaaaccaagacgggggttcttgtattatcaatcgaacaaactgcggtatggacagggaaacttgctgcattcaaaatggaggaacaagctccaccacaaaatgaagaatttgatgcaaacgctgccctgaaagcgtgtggcggtgaaaaactcgaagatgtgaagactctgagcgtgaaagacaacaacattcacaagctttccaatgacttttttgaaaagctcagcaatttggaagaacttgttatcagtaacaatgagctgacagcccttccattggatccttcaaaatcatatgaagccttgaaaagtctgaacattgcacaaaacaagctacaatcaatagatgaatttgttttcttcaataatcttgagaaccttgatatttcaggcaatgatcagattcaggtctcagagaggtataaattggtatctgtgctgtcaaagctcaagactttggatggaaaggaagttgacttgatgcgagaggcaattggcagactcgatgcaatgcttgctggaaagctcagggagctgctaagatcagcagaagtaaagaagatatacgcaaatactgatctagaagatgaggcggtcatgaagaagatgcaagcaaagattcttgttttggcaaagaaaaagataacttgcggtccagaagtgctaaagggatatagagaccataagcttgaaatcctgatcaaacaagagcttccagagataatcagagcatacaaggattcattaaacggcaaagaagaaaatggccatagtgatctacgcgggaagaggacacatgacggaaaagatcaaagcgaagatgatatagtcaatgaaaagaggaagaagacagtagcatcgcaaattgacgagatggaagatgaacacgatgataaaaaatatgttttgacgtatctactgcaaacgcattcactcaataacgatccaaaagattgggacacaaaagtctggatgtgtgaatttgaaccagacgttgacaacccagggcaaacaacgggaatttgtgcaacatgcggtggtgattcagtctgcttcattgattgttatacaggactagtaatgaaaaaatacaaacagccacaagaggtattttactgtctggcatggactgtgattgatcaaaaagacgacctaacagggcaaatgaagaaatgcagtatgctggcagttgcaggtcttcatggcgatatcaaactgattgacccacaacaactaatatgttatcaagaagtttcacaccacaagaaagcgattgatgctttgttgtttcatcctcaaaatcctacctggctcttcagtggctcagaagataaaactatcatcttgtgggatatcaacattccaagctcacctgcaatggctgtcagaaaactgttgacattaaaagcgagtaacatcgtcaggcagatcgtagtcctaccacatggtaaaatccttgttggctcatgtgatgatggatgctatgtttggaacattgataatattgatgaacatcaagctagatctgctgtattcaagtttatatttcctggagaaagaaggctgcccgttgattctgttagctgcatttcaaatagcattgtagctacaaagagaattgaagagggtcaagttcacttgtggtattcggtttctgaattcacccagaactgataacgctacaactacgactcatttccctacgcttccagaaacggatttgggccatgctgaatcagtaagaggctaaatcacctgctatttttttctcaaaaccaccgagcccaaaacaccacaaaaagcagttttcctgaactgctgcaccataaaatgagctaccagtacttagatgaatgtttcttctagccatgattgcaaaaactttcttcctctaagccattttctgttcgtttggagatgcaaaagatcttgtaaagacgctcgcatctttcgagatttttgtttgcttcagccgtttcagcagatcaatcgaacgcggcactcgacggtctttgttggcttttggcgggaagtcgaattcaaagaaggactagccaatgagagtgcggttactcaaatcctgcattctgattgggacggaaaaaatcattgccgattgagatttttgaccacttttacagctctagggaaataaggccctcactgcagcgacaacaacaacagcaattcaattcaattagatgagcaacgatgtaatgatttctcatgtgctgccctggagggtgacagatacaccattcctaaaattcaatttcattccagacgtgagtttattgctagctggcgatgatgaagggttcgtttggttgtatgatttatcaaaagttcacagccaacttccagatcctgaagaaagagatagaaaaggaggcatagaaatcaggcattcgaagtgcctacgatgttcaaacccattggcaaaactgtttaat

Transcript

scaffold49.g3.t2

GCTTTTTAAATGAATCAACTACATTTATTGGCTGAAGTTGATTAGTGCCCAAATGCAGAAAAACCAAGACGGGGGTTCTTGTATTATCAATCGAACAAACTGCGGTATGGACAGGGAAACTTGCTGCATTCAAAATGGAGGAACAAGCTCCACCACAAAATGAAGAATTTGATGCAAACGCTGCCCTGAAAGCGTGTGGCGGTGAAAAACTCGAAGATGTGAAGACTCTGAGCGTGAAAGACAACAACATTCACAAGCTTTCCAATGACTTTTTTGAAAAGCTCAGCAATTTGGAAGAACTTGTTATCAGTAACAATGAGCTGACAGCCCTTCCATTGGATCCTTCAAAATCATATGAAGCCTTGAAAAGTCTGAACATTGCACAAAACAAGCTACAATCAATAGATGAATTTGTTTTCTTCAATAATCTTGAGAACCTTGATATTTCAGGCAATGATCAGATTCAGGTCTCAGAGAGGTATAAATTGGTATCTGTGCTGTCAAAGCTCAAGACTTTGGATGGAAAGGAAGTTGACTTGATGCGAGAGGCAATTGGCAGACTCGATGCAATGCTTGCTGGAAAGCTCAGGGAGCTGCTAAGATCAGCAGAAGTAAAGAAGATATACGCAAATACTGATCTAGAAGATGAGGCGGTCATGAAGAAGATGCAAGCAAAGATTCTTGTTTTGGCAAAGAAAAAGATAACTTGCGGTCCAGAAGTGCTAAAGGGATATAGAGACCATAAGCTTGAAATCCTGATCAAACAAGAGCTTCCAGAGATAATCAGAGCATACAAGGATTCATTAAACGGCAAAGAAGAAAATGGCCATAGTGATCTACGCGGGAAGAGGACACATGACGGAAAAGATCAAAGCGAAGATGATATAGTCAATGAAAAGAGGAAGAAGACAGTAGCATCGCAAATTGACGAGATGGAAGATGAACACGATGATAAAAAATATGTTTTGACGTATCTACTGCAAACGCATTCACTCAATAACGATCCAAAAGATTGGGACACAAAAGTCTGGATGTGTGAATTTGAACCAGACGTTGACAACCCAGGGCAAACAACGGGAATTTGTGCAACATGCGGTGGTGATTCAGTCTGCTTCATTGATTGTTATACAGGACTAGTAATGAAAAAATACAAACAGCCACAAGAGGTATTTTACTGTCTGGCATGGACTGTGATTGATCAAAAAGACGACCTAACAGGGCAAATGAAGAAATGCAGTATGCTGGCAGTTGCAGGTCTTCATGGCGATATCAAACTGATTGACCCACAACAACTAATATGTTATCAAGAAGTTTCACACCACAAGAAAGCGATTGATGCTTTGTTGTTTCATCCTCAAAATCCTACCTGGCTCTTCAGTGGCTCAGAAGATAAAACTATCATCTTGTGGGATATCAACATTCCAAGCTCACCTGCAATGGCTGTCAGAAAACTGTTGACATTAAAAGCGAGTAACATCGTCAGGCAGATCGTAGTCCTACCACATGGTAAAATCCTTGTTGGCTCATGTGATGATGGATGCTATGTTTGGAACATTGATAATATTGATGAACATCAAGCTAGATCTGCTGTATTCAAGTTTATATTTCCTGGAGAAAGAAGGCTGCCCGTTGATTCTGTTAGCTGCATTTCAAATAGCATTGTAGCTACAAAGAGAATTGAAGAGGGTCAAGTTCACTTGTGGTATTCGGTTTCTGAATTCACCCAGaactgataacgctacaactacgactcatttccctacgcttccagaaacggatttgggccatgctgaatcagtaagaggctaaatcacctgctatttttttctcaaaaccaccgagcccaaaacaccacaaaaagcagttttcctgaactgctgcaccataaaatgagctaccagtacttagatgaatgtttcttctagccatgattgcaaaaactttcttcctctaagccattttctgttcgtttggagatgcaaaagatcttgtaaagacgctcgcatctttcgagatttttgtttgcttcagccgtttcagcagatcaatcgaacgcggcactcgacggtctttgttggcttttggcgggaagtcgaattcaaagaaggactagccaatgagagtgcggttactcaaatcctgcattctgattgggacggaaaaaatcattgccgattgagatttttgaccacttttacagctctagggaaataaggccctcactgcagcgacaacaacaacagcaattcaattcaattagatgagcAACGATGTAATGATTTCTCATGTGCTGCCCTGGAGGGTGACAGATACACCATTCCTAAAATTCAATTTCATTCCAGACGTGAGTTTATTGCTAGCTGGCGATGATGAAGGGTTCGTTTGGTTGTATGATTTATCAAAAGTTCACAGCCAACTTCCAGATCCTGAAGAAAGAGATAGAAAAGGAGGCATAGAAATCAGGCATTCGAAGTGCCTACGATGTTCAAACCCATTGGCAAAACTGTTTaat

Protein

Gene family

Family type	Membership / link
Ubiquitin family	UBD\|Other\|Beta-prp · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13855 all species →	LRR_8	Leucine rich repeat	Repeat	Interproscan
PF00400 all species →	WD40	WD domain, G-beta repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR052489 all species →	Family	Leucine-rich repeat and WD repeat-containing protein 1	Interproscan
IPR036322 all species →	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR001611 all species →	Repeat	Leucine-rich repeat	Interproscan
IPR032675 all species →	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan
IPR001680 all species →	Repeat	WD40 repeat	Interproscan
IPR019775 all species →	Conserved_site	WD40 repeat, conserved site	Interproscan
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24370 all species →	OPTICIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K24733	LRWD1; leucine-rich repeat and WD repeat-containing protein 1	-	Domain-containing proteins not elsewhere classified	ko04990	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.