Gene detail

Detailed information of scaffold49.g71.t2 in Aurelia aurita

Genomic Location: scaffold49:1027999...1041347
NR annotation: no NCBI-NR hit recorded
Species Aurelia aurita · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

scaffold49.g71.t2

tattatggctagacatcacatctgcgctgaatcgtcggaactttgcgaaagaattcctgcttgaacagtgcaaaggagatgaaaataattaacgaaaacgctgaatgaaatcctaaagaacatccacgcaatttcatcaaacaatccaccgaagtcttcctcttcagattgcatttccaagtggtgttactaattgggcctaagttggtgggcatttgaacatggctatccctacaccgaacagtaatgacgcttgtctcagtattgtgcacagtttaatctgccatagacaaggtggagagtcggagagtttcgccaaaagagcaattgagtctttggtcaagaaattgaaagagaaaaaggatgagttagatgctttgataacatcaataacgactggaggtgctcatccaacaaaatgtgtgacaatacaaagaactttggacggacgattgcaggttgctggtagaaaaggatttcctcatgtcatctactcaagaatatggaggtggcctgacttgcacaagaatgaattgaagcatgtctcatattgtcaatatgcgtttgatttgaagtgcgataatgtgtgcatcaatccgtatcactatgaaagagttgtatcacctgatatatctggtctttcaatttcatctcattcagacggaagtggtgctttgagcccaacgagcagtgatgattttaagcctaccccatcctatccaggtcaactatctcttggattgggtcaaggacccactatggcacctgatggttatggcccttattctcatccaccgcagatgacgtcaccaaaccatatgccacatttgataatgcagctaccagaccccagaagtccagcaactatgttggaagaaacgcatgtgaaaatcatggaaagtagggaagagtcacgacgtcacattatgcagagtcaacttggcggccacccaatgggcgacagttacctctcatcacattcagctgggccacccagcgtcggacctgtgctccatggccatggaggtcacagtagccatagtgggcatagcggtcatgggccacctctcccaggaactccactacccagtgctgcaatgataaacggaccaccctcgcacggaccgccctcgcatgggccgccagggcatgggctgccaggacatggtcactcaggtgggccacctatgctttccagtcctcatgaccaccatccgagtcatctgtcaggacatggcccttcacatggtccatcacacggggcaactcatggtactccacatgggacacctcatggtactccacatgggagccaacatggcacaagtgcacttggcagtggccaaggtgtattaatgagctcatctggcagttctggacacttgaaccgcgatttaggttcctctacacccagtggatcactgagttctgcatctgggcaccttgggtcatctgggcacattggaccattacctggcgggcatctaggatcgtcatcaggacatttgggatcatcatctgggcacctcggttcatctgggcacctagcatcacctactcatatggggtcttctagtcatattaaatcttctagccattctacaccatccagtatttctggttcttcgagcatgatgacgtcattaggccagtcaactcatccccagccctccgtgcttcagtcgcctacatcatcatcagcctcgcatacaccacttgggttgcatggagcctcgtctcaacctggaccacccagcgttctgtcgtctgtctcccaatctgggtcctctcatcaaacccaaagtagtcatgcaggatggagcaatcacccgagcactcctgtctcatcgccacttcagtcacattcgtcgatgccagcatctcagtcgcaacattctatgggaagtcaaccacattctatgcctagcacaagcttttatttggaacctatgctgtaatgtgtattttgctcactacagggccaccagacaattcgatgacatcgcatacatcgcatacatcgcatcatatggataca

Transcript

scaffold49.g71.t2

TATTATGGCTAGACATCACATCTGCGCTGAATCGTCGGAACTTTGCGAAAGAATTCCTGCTTGAACAGTGCAAAGGAGATGAAAATAATTAACGAAAACGCTGAATGAAATCCTAAAGAACATCCACGCAATTTCATCAAACAATCCACCGAAGTCTTCCTCTTCAGATTGCATTTCCAAGTGGTGTTACTAATTGGGCCTAAGTTGGTGGGCATTTGAACATGGCTATCCCTACACCGAACAGTAATGACGCTTGTCTCAGTATTGTGCACAGTTTAATCTGCCATAGACAAGGTGGAGAGTCGGAGAGTTTCGCCAAAAGAGCAATTGAGTCTTTGGTCAAGAAATTGAAAGAGAAAAAGGATGAGTTAGATGCTTTGATAACATCAATAACGACTGGAGGTGCTCATCCAACAAAATGTGTGACAATACAAAGAACTTTGGACGGACGATTGCAGGTTGCTGGTAGAAAAGGATTTCCTCATGTCATCTACTCAAGAATATGGAGGTGGCCTGACTTGCACAAGAATGAATTGAAGCATGTCTCATATTGTCAATATGCGTTTGATTTGAAGTGCGATAATGTGTGCATCAATCCGTATCACTATGAAAGAGTTGTATCACCTGATATATCTGGTCTTTCAATTTCATCTCATTCAGACGGAAGTGGTGCTTTGAGCCCAACGAGCAGTGATGATTTTAAGCCTACCCCATCCTATCCAGGTCAACTATCTCTTGGATTGGGTCAAGGACCCACTATGGCACCTGATGGTTATGGCCCTTATTCTCATCCACCGCAGATGACGTCACCAAACCATATGCCACATTTGATAATGCAGCTACCAGACCCCAGAAGTCCAGCAACTATGTTGGAAGAAACGCATGTGAAAATCATGGAAAGTAGGGAAGAGTCACGACGTCACATTATGCAGAGTCAACTTGGCGGCCACCCAATGGGCGACAGTTACCTCTCATCACATTCAGCTGGGCCACCCAGCGTCGGACCTGTGCTCCATGGCCATGGAGGTCACAGTAGCCATAGTGGGCATAGCGGTCATGGGCCACCTCTCCCAGGAACTCCACTACCCAGTGCTGCAATGATAAACGGACCACCCTCGCACGGACCGCCCTCGCATGGGCCGCCAGGGCATGGGCTGCCAGGACATGGTCACTCAGGTGGGCCACCTATGCTTTCCAGTCCTCATGACCACCATCCGAGTCATCTGTCAGGACATGGCCCTTCACATGGTCCATCACACGGGGCAACTCATGGTACTCCACATGGGACACCTCATGGTACTCCACATGGGAGCCAACATGGCACAAGTGCACTTGGCAGTGGCCAAGGTGTATTAATGAGCTCATCTGGCAGTTCTGGACACTTGAACCGCGATTTAGGTTCCTCTACACCCAGTGGATCACTGAGTTCTGCATCTGGGCACCTTGGGTCATCTGGGCACATTGGACCATTACCTGGCGGGCATCTAGGATCGTCATCAGGACATTTGGGATCATCATCTGGGCACCTCGGTTCATCTGGGCACCTAGCATCACCTACTCATATGGGGTCTTCTAGTCATATTAAATCTTCTAGCCATTCTACACCATCCAGTATTTCTGGTTCTTCGAGCATGATGACGTCATTAGGCCAGTCAACTCATCCCCAGCCCTCCGTGCTTCAGTCGCCTACATCATCATCAGCCTCGCATACACCACTTGGGTTGCATGGAGCCTCGTCTCAACCTGGACCACCCAGCGTTCTGTCGTCTGTCTCCCAATCTGGGTCCTCTCATCAAACCCAAAGTAGTCATGCAGGATGGAGCAATCACCCGAGCACTCCTGTCTCATCGCCACTTCAGTCACATTCGTCGATGCCAGCATCTCAGTCGCAACATTCTATGGGAAGTCAACCACATTCTATGCCTAGCACAAGCTTTTatttggaacctatGCTGTAATGTGTATTTTGCTCACTACAGGGCCACCAGACAATTCGATGAcatcgcatacatcgcatacatcgcatcATATGGATACA

Protein

Gene family

Family type	Membership / link
Transcription factor family	MH1 · all TF in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03165 all species →	MH1	MH1 domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003619 all species →	Domain	MAD homology 1, Dwarfin-type	Interproscan
IPR036578 all species →	Homologous_superfamily	SMAD MH1 domain superfamily	Interproscan
IPR013019 all species →	Domain	MAD homology, MH1	Interproscan
IPR013790 all species →	Family	Dwarfin	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13703 all species →	SMAD	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0005667 all species →	Cellular Component	transcription regulator complex	Interproscan
GO:0000978 all species →	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981 all species →	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0007179 all species →	Biological Process	transforming growth factor beta receptor signaling pathway	Interproscan
GO:0009653 all species →	Biological Process	anatomical structure morphogenesis	Interproscan
GO:0030154 all species →	Biological Process	cell differentiation	Interproscan
GO:0030509 all species →	Biological Process	BMP signaling pathway	Interproscan
GO:0060395 all species →	Biological Process	SMAD protein signal transduction	Interproscan
GO:0070411 all species →	Molecular Function	I-SMAD binding	Interproscan
GO:0071144 all species →	Cellular Component	heteromeric SMAD protein complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for scaffold49.g71.t2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.