Gene detail

Detailed information of scaffold5.g126.t1 in Morbakka virulenta

Genomic Location: scaffold5:4514212...4535322
NR annotation: XP_045174424.2, craniofacial development protein 2-like [Mercenaria mercenaria]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

scaffold5.g126.t1

gtctgaaaggtagatctggtgaagtagcagagtttcttgagcgaagacacattgatttgtgctgcatccaagaaacataatggagagggaaatctgtaagaatgatagatggaaaaaaggcaacatataagctgttttggattggtaatggaaaaggcacaggtggagtaggtatctttgtgacagagaaatgtatagacaaggtgattgatgtcaaatgcataagtgatcaaattatgctgcttaaattgatgataggtgagacaatctttacagcaatatcagtgtatgtgccacaatgtggcttaagtgaagaagtcaaggatgagttctatcacagtctgattgcagtcattggtaagctggcagagaaagaagttgttgctattgcaggtgatgtaaatggccatgctggaagaacagcatctgggtttgagggagtccatggaggaaatagatatgatgaccaaaataaggagggtgaaagaattatagagtttggacttgccatagacatGGTAAACTCCCTGAAGTTTTCACCAAATAGCCACATTCTTTGTGGAGGGTTTGAAGATTCATCAATACGAATATGGAGTTTGACTTCCAAGAAACTTCAGATAGTTAAGCCTAAGAGTTCTTCACTCCACAAGGAAGCTAGCCAAGAAATCACTACTGATTACATTTGCTTAAGAGGTCACGAAGGGCCAGTATATTCAACAGATTTTCTGAATGATGGAAATACAATCCTTTCATCATCAGAGGATACGTCAGTACGACTGTGGAGTTTGCAGCACCAAACGTCTCTATGTGAGTACCGAGGCCACAATTTACCAGTCTGGAGTGCGAATGCAAATTCTAGCGGCACCTACTTTGCAACAGCATCGCAAGATAGAACTATCCGACTTTGGTCAACAGAATATGTATATCCTTTAAGAATTTTTGTTGGACATAGTGGATCTGTAGACAGTGTTACTTTTCATCAAAATGGAAACTACATCGCATCTGGGTCCTATGATAAAACTTGCAGACTTTGGGATTTGCAGTCGGGGCAGTTCGTTCGTGTTTTAGTTGGGCAGCAAGGGTCGACTTACTGTTTGGCTTTCAGTATGGATGGCAAGTACCTTGTCTCAGCTGGAGATTGCTCACGAATTATGATTTGGGACCTTGGTTCAGGCAAGCTTATTCAAGAACTAAATGGACGGAACGACATTATTTATAGCCTAGCTTTTAGTAAAAGTGGGACATTCTTAGCTTCTGCGGGAATCGATGGGGTGATAGAAGTTTGGAACTTTAAATCCGGAGAACCCATGCACGAGCCAAATCCAGACGTCAAAGGAATCCAGTGTGATTTTATGGATGCTTTTACGTCGAAATCCTGCAACGTCCTTGCCCTCCAATTTGCACAAGCCAACCTACTTTATGCGGCTGGAGGAGCAGATCATAAGTAGATGTTTCCTACCTGATTAAGTTGTAATAAGTCTTTACCTACATAAAATGGTTATAAAATACCTGCACGAAAGCAAATGTTGCTGACAAGTGTCTAATTTAGAAAGGAATTGCAGAATTCAGGGTTATTCTGAATGTTTCATAGAAAGCAAATGTCTTTTATGGATCTATGTTACATTGGAGATTCTTGTAAAAGATTCCAACAAAAATACAGTCGACAGCAGTGAATGCGCGAAAATCACAATTCCTCGTAGCCCACTGCACATTCAGATTGTTCAGATTGGAGGAACATTCCACCATTAATATGCACTTGACCTGATATTTGACCTGCGAGATCACCCGTGGTCGGAGGTTTTGGGTGCAGTATCTGGAACCCGAAACACAATATGTCATTATAAGATGAGGAATTGTCAATTCCAGTGGAACAATAAATCTACAAATTGGTATCGAGTTAGGAGGGACTGCAGTTAACATCTAGACTGGAGAAGACTGGAAGATGGAACGCGGAATTTGTCAAATTCGTATTTTGTTGCGACCTGTACGCATCCAAACCAATAAGCAATAAACTGTTCATTTGCTGTAGACGTCAGTCATATCCATGTTTAGAATAAGGGATGTACAGCGTA

Protein

Uniprot

Gene family

Uniprot term	Description
Q15542	Transcription initiation factor TFIID subunit 5 OS=Homo sapiens OX=9606 GN=TAF5 PE=1 SV=3
Q8C092	Transcription initiation factor TFIID subunit 5 OS=Mus musculus OX=10090 GN=Taf5 PE=1 SV=1
P49846	Transcription initiation factor TFIID subunit 5 OS=Drosophila melanogaster OX=7227 GN=Taf5 PE=1 SV=1

Gene family	Subfamily
Ubiquitin Family	UBD\|Other\|Beta-prp

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00400	WD40	WD domain, G-beta repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR015943	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR020472	Repeat	G-protein beta WD-40 repeat	Interproscan
IPR001680	Repeat	WD40 repeat	Interproscan
IPR019775	Conserved_site	WD40 repeat, conserved site	Interproscan
IPR036691	Homologous_superfamily	Endonuclease/exonuclease/phosphatase superfamily	Interproscan
IPR036322	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR19879	TRANSCRIPTION INITIATION FACTOR TFIID	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005669	Cellular Component	transcription factor TFIID complex	Interproscan
GO:0006367	Biological Process	transcription initiation at RNA polymerase II promoter	Interproscan
GO:0016251	Molecular Function	RNA polymerase II general transcription initiation factor activity	Interproscan