Genomic Location: scaffold5:5013963...5056918
NR annotation: MCG8035099.1, hypothetical protein [Candidatus Thiodiazotropha taylori]
| CDS | ||||
| scaffold5.g135.t1 | ||||
| Transcript |
| scaffold5.g135.t1 |
| Protein |
| scaffold5.g135.t1 |
| Uniprot term | Description | |||
|---|---|---|---|---|
| Q5FVA9 | mRNA export factor OS=Xenopus tropicalis OX=8364 GN=rae1 PE=2 SV=1 | |||
| Q8C570 | mRNA export factor OS=Mus musculus OX=10090 GN=Rae1 PE=1 SV=1 | |||
| A5GFN6 | mRNA export factor OS=Sus scrofa OX=9823 GN=RAE1 PE=3 SV=1 |
| Gene family | Subfamily |
|---|---|
| Ubiquitin Family | UBD|Other|Beta-prp |
| Ubiquitin Family | E3|E3 adaptor Cullin RING|CDC20 |
| Ubiquitin Family | E3|E3 activity RING|PHD |
| Ubiquitin Family | E3|E3 adaptor Cullin RING|DWD |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF03372 | Exo_endo_phos | Endonuclease/Exonuclease/phosphatase family | Domain | Interproscan |
| PF00628 | PHD | PHD-finger | Domain | Interproscan |
| PF00078 | RVT_1 | Reverse transcriptase (RNA-dependent DNA polymerase) | Domain | Interproscan |
| PF00400 | WD40 | WD domain, G-beta repeat | Repeat | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR001680 | Repeat | WD40 repeat | Interproscan |
| IPR036691 | Homologous_superfamily | Endonuclease/exonuclease/phosphatase superfamily | Interproscan |
| IPR043502 | Homologous_superfamily | DNA/RNA polymerase superfamily | Interproscan |
| IPR005135 | Domain | Endonuclease/exonuclease/phosphatase | Interproscan |
| IPR019787 | Domain | Zinc finger, PHD-finger | Interproscan |
| IPR000477 | Domain | Reverse transcriptase domain | Interproscan |
| IPR019775 | Conserved_site | WD40 repeat, conserved site | Interproscan |
| IPR011011 | Homologous_superfamily | Zinc finger, FYVE/PHD-type | Interproscan |
| IPR015943 | Homologous_superfamily | WD40/YVTN repeat-like-containing domain superfamily | Interproscan |
| IPR036322 | Homologous_superfamily | WD40-repeat-containing domain superfamily | Interproscan |
| IPR013083 | Homologous_superfamily | Zinc finger, RING/FYVE/PHD-type | Interproscan |
| IPR019786 | Conserved_site | Zinc finger, PHD-type, conserved site | Interproscan |
| IPR001965 | Domain | Zinc finger, PHD-type | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR10971 | MRNA EXPORT FACTOR AND BUB3 | Interproscan |
| GO terms | Category | Description | Source |
|---|---|---|---|
| GO:0005515 | Molecular Function | protein binding | Interproscan |
| GO:0003824 | Molecular Function | catalytic activity | Interproscan |
| GO:0000972 | Biological Process | transcription-dependent tethering of RNA polymerase II gene DNA at nuclear periphery | Interproscan |
| GO:0003723 | Molecular Function | RNA binding | Interproscan |
| GO:0005643 | Cellular Component | nuclear pore | Interproscan |
| GO:0006405 | Biological Process | RNA export from nucleus | Interproscan |
| GO:0043130 | Molecular Function | ubiquitin binding | Interproscan |
Maintained by Dr. Jiajie She from Prof. Longjun Wu's Lab & Prof. Pei-yuan Qian's Lab
Hong Kong Branch of the Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou)
Hong Kong University of Science and Technology
Clear Water Bay, Kowloon, Hong Kong
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