Gene detail

Detailed information of scaffold5.g14.t1 in Aurelia aurita complex sp. Pacific

Genomic Location: scaffold5:225604...239364
NR annotation: no NCBI-NR hit recorded
Species Aurelia aurita complex sp. Pacific · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

scaffold5.g14.t1

ttgaacaatgatagatcttgtgttactattctgttttacagaagtcactcttaagtcatcaattggaaagtgtcttaatttttcattaatttcagttcttaatttcaatgtgcttcaggaatttgcttaggccaaaaggccaaagctctggtttgcaagtggatgcaaatttgagcattcaagattgatatttctgctctcgaagcgccaataccaacaaacgaggtatctatgttcaagttaactatcaaggaacattttgagagagattagcaatagattaaagctaaattcatatcgctggagtcaaccaaatctgtttacatttttttgggacacccggtagcatgaattgcttttgattgacacctctcaatccaaagtgattagcgatcatagacaaaggaaattatctcaaccagtaattcaaaacaaacaaagctgcaaaagttgctctgaaacccaggcagccagctcgctcgttgtgcacaccagaaattgtttttaagagcaaacatgagcatagatcgaaagaagaaggatgtatctaaacatctgccttgggcatttaatttgtttggctcaaaagccgattggtgggcgattcaattcttgtattatttgggtgtaattaaaacactcactgctcagcttctgaaccaaacaaatcaaatgttttacaaaatttgtccttgtggctaactcaaatatatgtctccccgttttgaaaattattgcagcaaaagtatttgctctataatcattaagatttatttttcaaatagccaaatgacttgaagtgttctttttttactttttggggatttttaaaacgctgatcccttggtcaattcaaatgaaaatatcagtcttgcaataccgtcaagaaatggccgataacgcacgatgaaatgtgtcgcaaaataaatgaaacgtagaacaatagatacaatattaatttcagtgtcccttctagtttatcattttggttttgctactctaaaaaagggtctggatcgagcgatattttatgcatttctaaacaaagtgctcgattgagtgtcgtcacccaggatatctttctttgttatttaattcagaaattagtcgcattatttgaattttaggtatcagcccgggggggggggtacatgacttttggatggaagggggtctgtcgcccggttttcagaaagctaccctcttctaattaccgaaacttgccttggtacccacttttatggtgaattttgggggaaaactgcccatttttaaaaatttttggcaaatcccttgtttggagaatttttggggccaaaaatccatccacatgggcggcacatactattcacaccatacaattccacataatcacactaatcaacataccttcagtcctttgttggctttcacactaatcaacataccttcagtcctttgttggctttcacactaatcaacataccttcagtcctttgttggctttcacactaatcaacataccttcagtcctttgttggctttaaagtatttcttatatcatcactaaccaataaattttgttgaaatcctcgtgtaataacctgctgtcgtatccaaactgtcaccgcgcccattgctgttatgtggacggtttaaagtatatttttgtgaatattagattgctcatcaacatttaatttcacataaaacgggcgtatagcttagctttgacaactctttatcgaattagggcccaattagggtcgaattatttccacggccatgtgaattttttctggcgggagattccaagcaaagacagatggctttatcaaagacaaggaaatcaaactaaacgtatttattgcattaaaagattattaatctgatcaaaaaagtattgaattgatatcttattatatgaagaagaggtctaatcgcaagttagcaagatggatgccaagattttagtgattggaggcggaggaagggaggccgccatttcttggaaacttgcccagtccgaaaaggttggaacgatatttgtctcgcctggaaatgctgggactgaagaagcgagtaaaacagaaaatgttgaattggatatcaaagatcattgtaaagtcgcagagtggtgtttggaaagaaacattgatcttgtcgtggtaggcccagaggccccgcttgctgaaggactagcagacagtttgaaaaagagcaacatcccttgttttggtccatccaagttggcagcacagatagaatcaagtaaatcgtttgcaaaatcgttcatgaatcgctatgggattccaacagcacaatgggtctctttgagtaatgttgaagatgctcgcaaacatattgggaatgcttcttatgatgcattggttgtcaaagctgatggtcttgctgctggaaaaggtgttgttgttgcaacaaataaggctgaggctattcaagctgctgaagaaatgttaaagaacagaaagtttggagatgccggaagttctatagtccttgaagagaaattagagggggaagaaatgtcagtcttggggttcagtgatggtacatatatcgttgcatttccaccagctcaagacttcaaaagattaaatgacaaaattaatgcaccaaacacaggcggaatgggggcttattgtcccgtccagaatatttcagatgaaaccctcaagcttatcaaagaagacattttgcagaaaacaataactggcatgaaagaggaaggacacccctttgttggggtcttgtatgctggtttaatgttgaccaaaaatgggcctaaagttttggaattcaattgcagatttggagatccagaaacacaagttttacttccgatgttaaagagtgatctatatgatgtcatgcttgcatgtgtgaatgggaatttgcagaacaatctcccagaattccattcaaatcgttcagctgtggcagttgtccttgcaagtggagggtatcctggatcgtataagaaggaaatggttattcatggtctgcaaaatacaaaggcctctgacaatctggttgtgttccatgctggtacaagccgaacggataaacagattgtcacatcaggtggaagagttctcggtgtgacaggaattggcacaaacattgttggtgcaaggtcacaagcatacaatggagtacaaaacatttctttcgatggagtgatattcagaaatgacatcgctgcaaaggctgcaggacttcatcgttccgtcagttacctttcatctggtgttgacatcgatgcaggcctctctttggtcgaaaccttcaaacctctggccgaggctacagcaagaactggctgtaccccagatttagggggctttgggggtgtattcgacatcaaagcttgtggatataaagaccctctacttattagtggcacagatggagttggtacaaaattgaaggtaaattttattgttttgctgattttattctgatttatagtagagaatttctaatctataaatgaaacagggattcagcaatctcgccttttgaagtagtgttctagaattttcaaaggtccttgttttcttcttttgtgtgattgttatcagacagattaatgaacataaaggcatgctttgacaagttcttttgaattcgtcagcagggactcagcaatctcgccttttgaaatgatgttctagaattttcaatggtccttgttttcttcgtttgtgtgattgttatcagaaagaataggtttcctttcctttcgacaacgaggctcttattttcatgtgatcagtttaaaacagcctgccctcaaccaatcaaatcctcgaacagtt

Transcript

scaffold5.g14.t1

ttgaacaatgatagatcttgtgttactattctgttttacagaagtcactcttaagtcatcaattggaaagtgtcttaatttttcattaatttcagttcttaatttcaatgtgcttcaggaatttgcttaggccaaaaggccaaagctctggtttgcaagtggatgcaaatttgagcattcaagattgatatttctgctctcgaagcgccaataccaacaaacgaggtatctatgttcaagttaactatcaaggaacattttgagagagattagcaatagattaaagctaaattcatatcgctggagtcaaccaaatctgtttacatttttttgggacacccggtagcatgaattgcttttgattgacacctctcaatccaaagtgattagcgatcatagacaaaggaaattatctcaaccagtaattcaaaacaaacaaagctgcaaaagttgctctgaaacccaggcagccagctcgctcgttgtgcacaccagaaattgtttttaagagcaaacatgagcatagatcgaaagaagaaggatgtatctaaacatctgccttgggcatttaatttgtttggctcaaaagccgattggtgggcgattcaattcttgtattatttgggtgtaattaaaacactcactgctcagcttctgaaccaaacaaatcaaatgTTTTACAAAATTTGTCCTTGTGGCTAACTCAAATATATGTCTCCCCGTTTTGAAAATTATTGCAGCAAAAGTATTTGCTCTATAATCATTAAGATTTATTTTTCAAATAGCCAAATGACTTGAAGTGTTCTTTTTTTACTTTTTGGGGATTTTTAAAACGCTGATCCCTTGGTCAATTCAAATGAAAATATCAGTCTTGCAATACCGTCAAGAAATGGCCGATAACGCACGATGAAATGTGTCGCAAAATAAATGAAACGTAGAACAATAGATACAATATTAATTTCAGTGTCCCTTCTAGTTTATCATTTTGGTTTTGCTACTCTAAAAAAGGGTCTGGATCGAGCGATATTTTATGCATTTCTAAACAAAGTGCTCGATTGAGTGTCGTCACCCAGGATATCTTTCTTTGTTATTTAATTCAGAAATTAGTCGCATTATTTGAATTTTAGGTATCAGCCCGGGggggggggtacatgacttttggatggaagggggtctgtcgcccggttttcagaaagctaccctcttctaattaccgaaacttgccttggtacccacttttatggtgaattttgggggaaaactgcccatttttaaaaatttttggcaaatCCCTTGTTTGGAGAATTTTTGGGGCCAAAAATCCATCCACATGGGCGGCACATACTATTCACACCATACAATTCCACATAATCACACTAATCAACATACCTTCAGTCCTTTGTTGGCTTTCACACTAATCAACATACCTTCAGTCCTTTGTTGGCTTTCACACTAATCAACATACCTTCAGTCCTTTGTTGGCTTTCACACTAATCAACATACCTTCAGTCCTTTGTTGGCTTTAAAGTATTTCTTATATCATCACTAACCAATAAATTTTGTTGAAATCCTCGTGTAATAACCTGCTGTCGTATCCAAACTGTCACCGCGCCCATTGCTGTTATGTGGACGGTTTAAAGTATATTTTTGTGAATATTAGATTGCTCATCAACATTTAATTTCACATAAAACGGGCGTATAGCTTAGCTTTGACAACTCTTTATCGAATTAGGGCCCAATTAGGGTCGAATTATTTCCACGGCCATGTGAATTTTTTCTGGCGGGAGATTCCAAGCAAAGACAGATGGCTTTATCAAAGACAAGGAAATCAAACTAAACGTATTTATTGCATTAAAAGATTATTAATCTGATCAAAAAAGTATTGAATTGATATCTTATTATATGAAGAAGAGGTCTAATCGCAAGTTAGCAAGATGGATGCCAAGATTTTAGTGATTGGAGGCGGAGGAAGGGAGGCCGCCATTTCTTGGAAACTTGCCCAGTCCGAAAAGGTTGGAACGATATTTGTCTCGCCTGGAAATGCTGGGACTGAAGAAGCGAGTAAAACAGAAAATGTTGAATTGGATATCAAAGATCATTGTAAAGTCGCAGAGTGGTGTTTGGAAAGAAACATTGATCTTGTCGTGGTAGGCCCAGAGGCCCCGCTTGCTGAAGGACTAGCAGACAGTTTGAAAAAGAGCAACATCCCTTGTTTTGGTCCATCCAAGTTGGCAGCACAGATAGAATCAAGTAAATCGTTTGCAAAATCGTTCATGAATCGCTATGGGATTCCAACAGCACAATGGGTCTCTTTGAGTAATGTTGAAGATGCTCGCAAACATATTGGGAATGCTTCTTATGATGCATTGGTTGTCAAAGCTGATGGTCTTGCTGCTGGAAAAGGTGTTGTTGTTGCAACAAATAAGGCTGAGGCTATTCAAGCTGCTGAAGAAATGTTAAAGAACAGAAAGTTTGGAGATGCCGGAAGTTCTATAGTCCTTGAAGAGAAATTAGAGGGGGAAGAAATGTCAGTCTTGGGGTTCAGTGATGGTACATATATCGTTGCATTTCCACCAGCTCAAGACTTCAAAAGATTAAATGACAAAATTAATGCACCAAACACAGGCGGAATGGGGGCTTATTGTCCCGTCCAGAATATTTCAGATGAAACCCTCAAGCTTATCAAAGAAGACATTTTGCAGAAAACAATAACTGGCATGAAAGAGGAAGGACACCCCTTTGTTGGGGTCTTGTATGCTGGTTTAATGTTGACCAAAAATGGGCCTAAAGTTTTGGAATTCAATTGCAGATTTGGAGATCCAGAAACACAAGTTTTACTTCCGATGTTAAAGAGTGATCTATATGATGTCATGCTTGCATGTGTGAATGGGAATTTGCAGAACAATCTCCCAGAATTCCATTCAAATCGTTCAGCTGTGGCAGTTGTCCTTGCAAGTGGAGGGTATCCTGGATCGTATAAGAAGGAAATGGTTATTCATGGTCTGCAAAATACAAAGGCCTCTGACAATCTGGTTGTGTTCCATGCTGGTACAAGCCGAACGGATAAACAGATTGTCACATCAGGTGGAAGAGTTCTCGGTGTGACAGGAATTGGCACAAACATTGTTGGTGCAAGGTCACAAGCATACAATGGAGTACAAAACATTTCTTTCGATGGAGTGATATTCAGAAATGACATCGCTGCAAAGGCTGCAGGACTTCATCGTTCCGTCAGTTACCTTTCATCTGGTGTTGACATCGATGCAGGCCTCTCTTTGGTCGAAACCTTCAAACCTCTGGCCGAGGCTACAGCAAGAACTGGCTGTACCCCAGATTTAGGGGGCTTTGGGGGTGTATTCGACATCAAAGCTTGTGGATATAAAGACCCTCTACTTATTAGTGGCACAGATGGAGTTGGTACAAAATTGAAGGTAAATTTTATTGTTTTGCTGATTTTATTCTGATTTATAGTAGAGAATTTCTAATCTATAAATGAAACAGggattcagcaatctcgccttttgaagtagtgttctagaattttcaaaggtccttgttttcttcttttgtgtgattgttatcagacagattaatgaacataaaggcatgctttgacaagttcttttgaattcgtcagcagggactcagcaatctcgccttttgaaatgatgttctagaattttcaatggtccttgttttcttcgtttgtgtgattgttatcagaaagaataggtttcctttcctttcgacaacgaggctcttattttcatgtgatcagtttaaaacagcctgccctcaaccaatcaaatcctcgaacagtt

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02843 all species →	GARS_C	Phosphoribosylglycinamide synthetase, C domain	Domain	Interproscan
PF01071 all species →	GARS_A	Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain	Domain	Interproscan
PF02844 all species →	GARS_N	Phosphoribosylglycinamide synthetase, N domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR020560 all species →	Domain	Phosphoribosylglycinamide synthetase, C-domain	Interproscan
IPR036921 all species →	Homologous_superfamily	PurM-like, N-terminal domain superfamily	Interproscan
IPR013815 all species →	Homologous_superfamily	ATP-grasp fold, subdomain 1	Interproscan
IPR020561 all species →	Domain	Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain	Interproscan
IPR016185 all species →	Homologous_superfamily	Pre-ATP-grasp domain superfamily	Interproscan
IPR037123 all species →	Homologous_superfamily	Phosphoribosylglycinamide synthetase, C-domain superfamily	Interproscan
IPR000115 all species →	Family	Phosphoribosylglycinamide synthetase	Interproscan
IPR020562 all species →	Domain	Phosphoribosylglycinamide synthetase, N-terminal	Interproscan
IPR011761 all species →	Domain	ATP-grasp fold	Interproscan
IPR011054 all species →	Homologous_superfamily	Rudiment single hybrid motif	Interproscan
IPR004733 all species →	Family	Phosphoribosylformylglycinamidine cyclo-ligase	Interproscan
IPR020559 all species →	Conserved_site	Phosphoribosylglycinamide synthetase, conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10520 all species →	TRIFUNCTIONAL PURINE BIOSYNTHETIC PROTEIN ADENOSINE-3-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004637 all species →	Molecular Function	phosphoribosylamine-glycine ligase activity	Interproscan
GO:0009113 all species →	Biological Process	purine nucleobase biosynthetic process	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0046872 all species →	Molecular Function	metal ion binding	Interproscan
GO:0004641 all species →	Molecular Function	phosphoribosylformylglycinamidine cyclo-ligase activity	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0006164 all species →	Biological Process	purine nucleotide biosynthetic process	Interproscan
GO:0006189 all species →	Biological Process	'de novo' IMP biosynthetic process	Interproscan
GO:0046084 all species →	Biological Process	adenine biosynthetic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for scaffold5.g14.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.