Gene detail

Detailed information of scaffold5.g167.t1 in Aurelia aurita

Genomic Location: scaffold5:2414459...2421011
NR annotation: no NCBI-NR hit recorded
Species abbreviation AAURI1 · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

scaffold5.g167.t1

ggaaaagcatttatggagctgagcaggatgtgatctcgttttggcggaggtgacattatcaactcgaggcagccgaatagatgtctctcgtgtggcagcaattctgacaaaatgcctatgaaaacaaagaagatcaaagtaaagaaggttgctgcagcgccttacaccacagccaagcctgcacaaaagaagaaggcagtcaacccattggttgagaaaaggtcaaagaattttggaattggagctgatgttcaacccaagagggacttgaccagatatgtaagatggccaaaatacatcaggctgcaaaggcaaaagcgtatcttgtaccaaaggctgaaggtcccaccagcgatcaaccagttcacacaaacattagacaagaacacagccacacaactcttcaaactgctacataaatatcgtccagagacaaaggcagagaagaaagccagactcacgaaagctgctgaaaggaaagcagaaggaaaagaggaggcaccaggaaagaaacctgtggttgttaaatatggaataaatcatattacaaacttggttgaaagcaaaaaggcgcagcttgttgtcattgcacatgatgttgacccaattgagatcgttgtctggcttccagccctttgcagaaagatgggtgtcccttactgcattgtgaaaggaaaagcaagacttggaaagcttgtacacaagaaaacagccacagccgtttgtgtgactgctaccaggcaagaagacaaacacaacctcgacaaattaagcgaaagtgtcaaggctaactacaatgaccgttttgatgaaattcgtcgtcactggggtggtggtgttatgggttgcaaatcacaagccaaagttgctaagttagagaaggtcaaggcaaaagaactcagagttgcataaatgtatttgatcaaattgaaatttacacagaaatggggcagtattctttgtgtcatctttataatctgggagaaaatgattcgttaaggagaatcttaggtgatagcaagcggaatttgtacatacacttcattagtcatataaagtccaatgttttaattccatcaaattttataagaccccgatcaatttaaatgatggcaagtttgagcgagaacaattccaagagcagaagtcctacaaaataatgattttagacattttatgttttttctctcgcgaaaacaaaatgattttttgtccaaggttgaccagattttcagggaatgattcgtccctcgaaccaaaatcttcactgccagcattgggaaggcgctactagagatgaaagaggtcagcattaggaaggcgcgtatgtttttacgaatggaaccaaagctatgcagagagccatcttttctgccgataatatcacaatttaaatcggcaaacttgaacacttaattttggaaggaacgggaatagaagattttttttttttttttttcatactttatttaacgttggtaaataggtaagatagctaattacaatacataaatgcaagaatcagctaattaataccaacaaacataacataattaatacacataaacataattaatagtaaagtggcaaaaacgaaacgaaaacgatatctagatttagatttttagtaaatctgattaatgtagccaagattctgtaaatacggggtacagagcctacaaatgcaagggatggaaaactgctttattttagctttgaatatttctaaactgctagccattctaatttcatttggaatgctgttccatatttggttgcatctatgggttattgtttctgtaccatataaaactgtttttgganttctgttatgcaagtaactatataataattgtaatgcattatcactgaagccataagcatgtagtttagcaattaatagatcatgagggagacaatcaaaagcctttgataggtccatcattacagtaccagcaaccattttttcatctaggcatgcttttaagctttctgtgagtcgcaagagggcatgttgtgtgctatacccttcacgaaaaccacataaaatagggaatagtac

Transcript

scaffold5.g167.t1

GGAAAAGCATTTATGGAGCTGAGCAGGATGTGATCTCGTTTTGGCGGAGGTGACATTATCAACTCGAGGCAGCCGAATAGATGTCTCTCGTGTGGCAGCAATTCTGACAAAATGCCTATGAAAACAAAGAAGATCAAAGTAAAGAAGGTTGCTGCAGCGCCTTACACCACAGCCAAGCCTGCACAAAAGAAGAAGGCAGTCAACCCATTGGTTGAGAAAAGGTCAAAGAATTTTGGAATTGGAGCTGATGTTCAACCCAAGAGGGACTTGACCAGATATGTAAGATGGCCAAAATACATCAGGCTGCAAAGGCAAAAGCGTATCTTGTACCAAAGGCTGAAGGTCCCACCAGCGATCAACCAGTTCACACAAACATTAGACAAGAACACAGCCACACAACTCTTCAAACTGCTACATAAATATCGTCCAGAGACAAAGGCAGAGAAGAAAGCCAGACTCACGAAAGCTGCTGAAAGGAAAGCAGAAGGAAAAGAGGAGGCACCAGGAAAGAAACCTGTGGTTGTTAAATATGGAATAAATCATATTACAAACTTGGTTGAAAGCAAAAAGGCGCAGCTTGTTGTCATTGCACATGATGTTGACCCAATTGAGATCGTTGTCTGGCTTCCAGCCCTTTGCAGAAAGATGGGTGTCCCTTACTGCATTGTGAAAGGAAAAGCAAGACTTGGAAAGCTTGTACACAAGAAAACAGCCACAGCCGTTTGTGTGACTGCTACCAGGCAAGAAGACAAACACAACCTCGACAAATTAAGCGAAAGTGTCAAGGCTAACTACAATGACCGTTTTGATGAAATTCGTCGTCACTGGGGTGGTGGTGTTATGGGTTGCAAATCACAAGCCAAAGTTGCTAAGTTAGAGAAGGTCAAGGCAAAAGAACTCAGAGTTGCATAAATGTATTTGATCAAATTGAAATTTACACAGAAATGGGGCAGTATTCTTTGTGTCATCTTTATAATCTGGGAGAAAATGATTCGTTAAGGAGAATCTTAGGTGATAGCAAGCGGAATTTGTACATACACTTCATTAGTCATATAAAGTCCAATGTTTTAATTCCATCAAATTTTATAAGACCCCGATCAATTTAAATGATGGCAAGTTTGAGCGAGAACAATTCCAAGAGCAGAAGTCCTACAAAATAATGATTTTAGACATTTTATGTTTTTTCTCTCGCGAAAACAAAATGATTTTTTGTCCAAGGTTGACCAGATTTTCAGGGAATGATTCGTCCCTCGAACCAAAATCTTCACTGCCAGCATTGGGAAGGCGCTACTAGAGATGAAAGAGGTCAGCATTAGGAAGGCGCGTATGTTTTTACGAATGGAACCAAAGCTATGCAGAGAGCCATCTTTTCTGCCGATAATATCACAATTTAAATCGGCAAACTTGAACACTTAATTTTGGAAGGAACGGGAATAGAAGATTTTttttttttttttttcatactttatttaacgttggtaaataggtaagatagctaattacaatacataaatgcaagaatcagctaattaataccaacaaacataacataattaatacacataaacataattaatagtaaagtggcaaaaacgaaacgaaaacgatatctagatttagatttttagtaaatctgattaatgtagccaagattctgtaaatacggggtacagagcctacaaatgcaagggatggaaaactgctttattttagctttgaatatttctaaactgctagccattctaatttcatttggaatgctgttccatatttggttgcatctatgggttattgtttctgtaccatataaaactgtttttgganttctgttatgcaagtaactatataataattgtaatgcattatcactgaagccataagcatgtagtttagcaattaatagatcatgagggagacaatcaaaagcctttgataggtccatcattacagtaccagcaaccattttttcatctaggcatgcttttaagctttctgtgagtcgcaagagggcatgttgtgtgctatacccttcacgaaaaccacataaaatagggaatagtac

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01248 all species →	Ribosomal_L7Ae	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR018492 all species →	Family	Ribosomal protein eL8/Nhp2 family	Interproscan
IPR029064 all species →	Homologous_superfamily	Ribosomal protein eL30-like superfamily	Interproscan
IPR001921 all species →	Family	Large ribosomal subunit protein eL8	Interproscan
IPR004038 all species →	Domain	Ribosomal protein eL8/eL30/eS12/Gadd45	Interproscan
IPR004037 all species →	Conserved_site	Large ribosomal subunit protein eL8-like, conserved site	Interproscan
IPR050257 all species →	Family	Eukaryotic ribosomal RNA-processing and assembly protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23105 all species →	RIBOSOMAL PROTEIN L7AE FAMILY MEMBER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0042254 all species →	Biological Process	ribosome biogenesis	Interproscan
GO:1990904 all species →	Cellular Component	ribonucleoprotein complex	Interproscan
GO:0000470 all species →	Biological Process	maturation of LSU-rRNA	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0022625 all species →	Cellular Component	cytosolic large ribosomal subunit	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K02936	RP-L7Ae, RPL7A; large subunit ribosomal protein L7Ae	-	Ribosome biogenesis	ko03009	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.