Gene detail

Detailed information of scaffold5.g17.t1 in Morbakka virulenta

Genomic Location: scaffold5:1014163...1027599
NR annotation: XP_002154409.1, nuclear polyadenylated RNA-binding protein 4 [Hydra vulgaris]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

scaffold5.g17.t1

GAGGGTGTTCCATGATGCATTGCCCGAGCAAAAGAATCTTCACGCTGAAATTGTCAACCATTTTGGATTTCTAAAATCTGAACTGCCAATTAGTCTTTGTTGATATCCTTGACTATTCTTAACCATGGCTTCCGATGACGATTGTGAGCAAGTTCGTAAGATATTTGTAGGAGGCTTAAATCGTGTAACAGACGATGAATCTTTGAGTAACTTCTTTTTACCATGGGGTGTAATTGTTGATCATAATGTGATGAGAGACCCACAAGGAGTATCGAGAGGCTTTGGCTTTGTAACATTTGAAAATTCGGAACCAGTTGATAACTTAATGAAAGCAAAGAAACAAGGACAAAAATTTCGCTTGGATGAAACCGATGTAGAAATCAAACGCGCCTTTCCTAAAAGTTTAGGATCATTTCCTGGCGAAAAACTACGGGACGCTGTTAACAGAACTCGAAAGTTATTTGTTGGAGGTATTCCATCGACGACAACAGAAGCGGATCTGCGAAGTTATTTCAATAAATACGGGGCAGTAAGTGATGTGGAAATACTTTACGATAAAGTAACCTTAAGAATGCGAGGTTTTGCATTTGTTACGTTTGAAGATGAAGATTCAGCTGACAAGGCTTGTCAAGTTCGTGATCACAAAATCAAAATGAAGTCCTGTGAAGTAAAGAAAGCGGAGTCGAGATCTTCGATCAAATTCCGACAAGAAAGGCAAGGATTCCCAAGTGGACAAAGAGGAGGCTACAGTAATTATAACCCAGGGGGAGGAGGCATGGGAAATGGAAATTTTGGGGCTGGGGGAAATGTTGATGTACCTGGTCTAACAAATGGTGTTGCAGCATTACAAGCTCTTGGTTTAACAGGTGCAATATTACAGAATTTAGTATCTACAGGGGCTGTTAGTCAAGGCCAGTTGCAGAGTGCCATTGGAGGATTGCAGGGTAACAGACAACAGGGTGGCTTTGGTGGAAATCAGCAAGGTGGTTTTGGTGGAAATCAACAAGGTGGTTTTGGTGGAAATCAGCAAGGTGGTTTTGGTGCAAACTTTGGAGCTGGAGCCAGTGGTACTGGTGGCAGTCTAGCACCAGCTGGAAATAATGGTGGTGGTGCAGGAGGAAACAATCCTCTTGCATTGCTAGGTATGCTTGGTAATATGGGTGGACAGCTAGGTAACCTGTTAAATCTTGCAGGTTTGGCCAGTTTAGCATCTGGTGGCTCAAATCTTGGAAATCAGTCACAGGGTATGAGCAATCCACCTGATAACAATGAACAATACCGTCAGCAACAATACAGTAGTAGTTCGGCCCCGTCTAGTACTTCCTATGGGAATAGTGGTGTGAATGCGGCAGAGGATGCTAACTATGGGTATAATTATGGATATAATATGGGAGCATACAACCAACAACAGTCAAGTTATGGACCAGTAAAGTACCAGAGCCCAAGTGGAGGAAATTCAACAGATAAAAAAAATTTTAAACCTTATTAGACAGGGAGATAGAAGTGTTGTATAACCAGCAAAGACAGTGATCAAAAGAAAGTGAACTTCAGTAAGGCAGTGCAGAGTTTTAAAGTAAAGAAGAGTATCTAAAAATTTATAGTACCAGCATTGTAGTTTGTCAAGGCATATTGAAAAGTGAAGCGAACTCTTGATGCGAGATTGGAATCTTTTAATTAAATATGCCTTTTCGCAGGATATCATGTTCCGGGTAGTTTACGTAGCTAACAAGTATTAGCACCCAGTCTTGTTGCAACACTTTTTTGGTAGAGGTAGACTTTTTTGTACGATGAAACAAGCCGCTTGTGTTAGTTGTTTAGCGCCCAGACAGTAGACCTCCATTTGTAGTGTAAAATTTTTTCATCAAACGGCACTCTTGTAGTGACTACAGTAGATTAACCCCGTTGTAGTTTTTGAACTTCTAGCGCAGTTGATATTCGCTGTAGTAGAGAAAACATGTATTGGACAGCTGGTTTTGTGAAGAACAAGTTGTAGATGATTTTCAGGCATTGCGAAAATTGGTTTTAAACAGCTGTTTTAAGGAATTTCGTGCTTTAAATACGTATTTTGAGAATATACTATAGTTTTAGTTTTTCTCGACGTTTATCTGAGATCAGTATCTTAAAAACAAATATAGGTTAACAATGTAAAGTGTAATTGACGATTTTAGTGCATCGTATTCCTTAGAAAACAGTGTATTATTACTGTGGGCTAAGCTAATCTTTGATGGTTAGTTGTTGCTAGTCCTAACAAAGATTTATAATTTTTGTTTAATTGGTATCATTCAGAAGTCCCAATTGACAGTAGAATTCTAACTTCTTAACAGTAAAGAACCTCTTGAAACATGTCTTGGGCAACGATGATTTCTGGGTATGTTACCTGTTAAATTTCTTTGAGGCCAGTCACTGTGGTGCAGCTTTTGCAGAATTAGCAATAACAACATTGGATTCTATTAAGTCAAAGGAAATGTGCTGCAGTTCTCGTGTTGAAATGAAATGCCTTTTCATTTGAATGTAACGTGTGTTTGCTTTGGATATCGCAAGGCAGGTCACATGTGCAAAGCAATAATTTTTTTTAAGATTGATTTTAATGCACACACTTTTTGTATTACCATATTTATGTTAATTTGTGTAGTGTATCACTAGCTATTAAGATTATGTAGCGAAATATTGCTAGTCTAAGTAACAAACCTAGCCTTAGCACAATCAGACGTTAGTTAGCTATTAAAAATATATTTTGCCTGAGTTGCGGTTTCGTGTTAGCCTCTTttattattattgttattgttattactattgttactactactattattattattattattattattattattattattattattactattactattaATGGTGGGATTTCGGGGTGAAGGCGTTGGGGGGAGGGGGAGGGACTCGAACAAAATTTCTTAGTTTTT

Protein

Uniprot

Uniprot term	Description
P21522	Heterogeneous nuclear ribonucleoprotein A1, A2/B1 homolog OS=Schistocerca americana OX=7009 GN=HNRNP PE=2 SV=1
P48810	Heterogeneous nuclear ribonucleoprotein 87F OS=Drosophila melanogaster OX=7227 GN=Hrb87F PE=2 SV=2
Q8W034	Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana OX=3702 GN=RNP1 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076	RRM_1	RNA recognition motif	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR48033	RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0000790	Cellular Component	chromatin	Interproscan
GO:0005654	Cellular Component	nucleoplasm	Interproscan
GO:0010468	Biological Process	regulation of gene expression	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K12741	HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3	-	Spliceosome	ko03041	deepkoala