Gene detail

Detailed information of scaffold5.g175.t1 in Morbakka virulenta

Genomic Location: scaffold5:6821086...6924751
NR annotation: XP_028403343.1, pentatricopeptide repeat domain-containing protein 3, mitochondrial-like isoform X1 [Dendronephthya gigantea]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

scaffold5.g175.t1

CTTGGAGGCTTGCAAATTATGGGTGTTCTTGCCAGAAGCTATCATTTATACGAAGGCAGCTGAGTATTAACTTAAGGTGTTTATCAAGTCAGGATTTATCAGAAAAGACACCAGGTATTGCCTGCTGACAATGTTTTCTCATTTTGTTACACTTACTTTGGTCACAAAGTCTTCCTACAATGAAGATCGCAATGCAGTTTTGAGGACTCTAGCTGGAACTGTGAAACAATTGCAAGGAAGACCACCATATGGGTTTTTTGATGACCCTTTTTTAATGCCAAAAGCACTTGCCAGAAAGCAAGAGTACCTGAAAGCAATTGAATCCGGAGAGGAAGCAGCGTTATATGTTTTGAAAAAGTTTCCAGGTATAACAAGATTGAGGACACCAGCCCCAGATTGGCGTACAGTTGAGGAGGAGTTGGAAATCAAAGATGACGAGGACACATTAAACTATTACATTTCGAATGATAGTTTAAGAGAAGCAGTTGAACTTTATGAAAAACTCAAAGGAAGTGGTAAACAACTGTCACTTTTGACCCTGAATAAAATGCTTGATCTTGTTGGATTTTATGGAGTCGGGAATGATATTGTGATGAACATGGAAGGCAAAGAGATTGATTTAGAAGGATCAGATAACGACAGTAGTAGCAGCAGTAGTAGCAATGAGAGTGATTCCAGTAGTAGCGATGAAGAAGAAGGTGATCAACCAGATCAAGGTGGGAAGACTGAAAAAGTGACTTCCGAAAAATACGTTGGAGAATCCAAGTGGAGACATGATAACTATGCCGAAATGATGTTTTCTCAGATGGAAGAGAAAAATGGTGACACATATGAAGCTTTAATTCTTGGTTTACTGAAGTTCAAACAGAGGGAACGGGCATTTGATTTCTACGAAGCAATGTTAGAGAAAGGCTATCAGGGTACCTTTAACAGCTTACTCGAATTGGCATATATCAAAGGGCCACATGCACCTAGTCTCGCAGTCCAAATAATCAATGAAATGGTGGAAATTGGTGTTGAACCCTCACTCGGTAGTTATCTCTTTGTTTTGAAAATTTTTTCAAGTAGAGGAATATATACATCTGACTTAATGTTATCTATCATCAAACGCCTGAAGGAACAAGAACTAGTTTTACATCATGAAAGAGATGCTGACTTCTTTAATGTAGCAATGGCTACGACAAGGCAACATTGTGACGTGAAATCTGCAAAAGCCCTTTATTCTCTAGCTTTGAAACCGGAAAATGCCAGACTGATTCAACAGAGATCCAGAGCATTTTTAGCAAATTATCTCAGTACATTAGCAGTGTCAGAAAAAGATATTGACTTCGTTTTTCAGGAATATAATCATCTTGTACCCAGTGTATTTATTCCAAGGGACTGGAATTTTGAAGACATCTTTCGAAGATTGGAACGAGAAAATCAGGCATGGAGGATACCTGAGATATACAAAGATCTTAAAACGGGTGGTATCAATATAGGTGTTGGACTGATTAAGACCATACTTCGCACTTTGATGTGCGACGTTCCACAGGAGCATGCAGAATCCCTTCTTATGGTCGTAGAAGACTTGTGGTATTTAGTTAGAAATACAGAAGTGGAGGCAATGCCACTGATGTTGAGCGCTTTGGTAAAATTTTATGTCATGAACAGTAAATTTACTTCGGCCAGGGACACCTTATCAATATTTGTGGAGAAAGGTGGAGAACCCAGCAAAGATGTGCTTAATTTTCTACTCCGTTCCAGCGCGGAAAAGGAGGATGTGGAAGGCGTAATGACAACTCTTGAATTATTGGCGAGTTTGAAACTTCTTCCAGACGCTGAGATTATAGAAGATTTGACATCCGCTCTGGAAATAAGTGATAACCAACGGGAATACATAAAGGGACTTATCCATTCAAGAATAAATTGACATTCGAAAGTCTATGTCTGTGGCTTACGCGATTCCAAATGAAGAAAGCGCATGTCTATCAAGGATAACGCGTTTACTTTCCCCGGACTTTTCAAatacacgctttttttttataagcaacgcaatattttgactcaggctcgctgttgcttaacatttccacttcttttttgtttgaactccaaaaagcagtgtagcccctccccctttaaacaaagaggacgttttccccctcctcccctctataaggaatagttttatttaaagatgaacatctgtgttggtacatgaacatggcgccagacactgacgtcattaaaatttcgaacaggcaaaagaactaaaagagatcattctactgtgttatattgaggacgttttccccctcctcccctctataaggaatagttttatttaaagatgaacatctgtgttggtacatgaacatggcgccagacactgacgtcattaaaatttcgaacaggcaaaagaactaaaagagatcattctactgtgttatattggtttttaggatttttaacttgtttttatcgaagatattctcctgttgagtaaaaaatagattttctcaaaaataattttgtacggtacacgaaacgagcgtgggttgttgcttaacagttgcttaaaatttcgtaaatttcgagcctggcgttgtttataagatgttgcttataaaaaaGAAGCGTGTACTGTCTTGAAGGTATGGTTGTTGTTCAGTGTTGCATGGAAAGGATACCTAAAGCAAAGTTTATAGGAACGCAAAGTTTTGAGAAAGACCTTATGCTGACTGAAGGACTGGTACTGTATTACATTCCACGAGGTTGTAGTGTAAAAGGCAGATGTCATAAAAGAAAATCTACTAGCGATGTTGGATTATGAAATTCTTATTACAATAAATACGTTTTCTTTAGTACTTCAGTTCAAATATGATGACATTTGTTGTATTTTCAATGGTTGTAAATTCAATTGAATATGCCTTTTTTTCCATACAAGGATAAAGATATGGCCTTACC

Protein

Uniprot

Uniprot term	Description
Q32N55	Small ribosomal subunit protein mS39 OS=Xenopus laevis OX=8355 GN=ptcd3 PE=2 SV=1
A1Z9A8	Small ribosomal subunit protein mS39 OS=Drosophila melanogaster OX=7227 GN=Ptcd3 PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01535	PPR	PPR repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011990	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR002885	Repeat	Pentatricopeptide repeat	Interproscan
IPR037387	Family	Pentatricopeptide repeat domain-containing protein 3	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR16276	PENTATRICOPEPTIDE REPEAT DOMAIN-CONTAINING PROTEIN 3	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005739	Cellular Component	mitochondrion	Interproscan
GO:0019843	Molecular Function	rRNA binding	Interproscan
GO:0032543	Biological Process	mitochondrial translation	Interproscan
GO:0043024	Molecular Function	ribosomal small subunit binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K17659	PTCD3; pentatricopeptide repeat domain-containing protein 3	-	Mitochondrial biogenesis	ko03029	deepkoala